Nucleotide Global Alignment

Description

Query:
ccsbBroad304_04128
Subject:
XR_001747977.1
Aligned Length:
2425
Identities:
1362
Gaps:
1033

Alignment

Query    1  ATGGCTAGTCGAGGGGCTCGGCAGCGCCTGAAGGGCAGCGGGGCCAGCAGTGGGGATACGGCCCCGGCTGCGGA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CAAGCTGCGGGAGCTGCTGGGCAGCCGAGAGGCGGGCGGCGCGGAGCACCGGACCGAGTTATCTGGGAACAAAG  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  CAGGACAAGTCTGGGCACCTGAAGGATCTACTGCTTTCAAGTGTCTGCTTTCAGCAAGGTTATGTGCTGCTCTC  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  CTGAGCAACATCTCTGACTGTGATGAAACATTCAACTACTGGGAGCCAACACACTACCTCATCTATGGGGAAGG  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  GTTTCAGACTTGGGAATATTCCCCAGCATATGCCATTCGCTCCTATGCTTACCTGTTGCTTCATGCCTGGCCAG  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  CTGCATTTCATGCAAG----AATTCTACAAACTAATAAGATTCTTGTGTTTTACTTTTTGCGATGTCTTCTGGC  440
             || ||||..|..|||    |||||         ||||                        |||         
Sbjct    1  -TG-ATTTACTAAAAGTCAAAATTC---------ATAA------------------------ATG---------  30

Query  441  TTTTGT-GAGCTGTATTTGTGAACTTTACTTTTACAAGGCTGTGTGCAAGAAGTTTGGGTTGCA--CGTGAGTC  511
                || ||||||            .||.|.|.||.|||.|||          |||...||.||  |.||..||
Sbjct   31  ----GTAGAGCTG------------GTAGTCTCACCAGGATGT----------TTTCTATTCCATTCTTGCATC  78

Query  512  GAATGATGCTAGCC-------TTCTTGGTTCTCAGCACTGGCATGTTTTGCTCATCATCAGCATTCCTTCCTAG  578
            .|      |.|.||       |||||||   .||..|.|||.|             |..|.|||||||||||||
Sbjct   79  AA------CCACCCACCTCCTTTCTTGG---CCATTAGTGGAA-------------AGAAACATTCCTTCCTAG  130

Query  579  TAGCTTCTGTATGTACACTACGTTGATAGCCATGACTGGATGGTATATGGACAAGACTTCCATTGCTGTGCTGG  652
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  131  TAGCTTCTGTATGTACACTACGTTGATAGCCATGACTGGATGGTATATGGACAAGACTTCCATTGCTGTGCTGG  204

Query  653  GAGTAGCAGCTGGGGCTATCTTAGGCTGGCCATTCAGTGCAGCTCTTGGTTTACCCATTGCCTTTGATTTGCTG  726
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  205  GAGTAGCAGCTGGGGCTATCTTAGGCTGGCCATTCAGTGCAGCTCTTGGTTTACCCATTGCCTTTGATTTGCTG  278

Query  727  GTCATGAAACACAGGTGGAAGAGTTTCTTTCATTGGTCGCTGATGGCCCTCATACTATTTCTGGTGCCTGTGGT  800
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  279  GTCATGAAACACAGGTGGAAGAGTTTCTTTCATTGGTCGCTGATGGCCCTCATACTATTTCTGGTGCCTGTGGT  352

Query  801  GGTCATTGACAGCTACTATTATGGGAAGTTGGTGATTGCACCACTCAACATTGTTTTGTATAATGTCTTTACTC  874
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  353  GGTCATTGACAGCTACTATTATGGGAAGTTGGTGATTGCACCACTCAACATTGTTTTGTATAATGTCTTTACTC  426

Query  875  CTCATGGACCTGATCTTTATGGTACAGAACCCTGGTATTTCTATTTAATTAATGGATTTCTGAATTTCAATGTA  948
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  427  CTCATGGACCTGATCTTTATGGTACAGAACCCTGGTATTTCTATTTAATTAATGGATTTCTGAATTTCAATGTA  500

Query  949  GCCTTTGCTTTGGCTCTCCTAGTCCTACCACTGACTTCTCTTATGGAATACCTGCTGCAGAGATTTCATGTTCA  1022
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  501  GCCTTTGCTTTGGCTCTCCTAGTCCTACCACTGACTTCTCTTATGGAATACCTGCTGCAGAGATTTCATGTTCA  574

Query 1023  GAATTTAGGCCACCCGTATTGGCTTACCTTGGCTCCAATGTATATTTGGTTTATAATTTTCTTCATCCAGCCTC  1096
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  575  GAATTTAGGCCACCCGTATTGGCTTACCTTGGCTCCAATGTATATTTGGTTTATAATTTTCTTCATCCAGCCTC  648

Query 1097  ACAAAGAGGAGAGATTTCTTTTCCCTGTGTATCCACTTATATGTCTCTGTGGCGCTGTGGCTCTCTCTGCACTT  1170
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  649  ACAAAGAGGAGAGATTTCTTTTCCCTGTGTATCCACTTATATGTCTCTGTGGCGCTGTGGCTCTCTCTGCACTT  722

Query 1171  CAGCACAGTTTTCTGTACTTCCAGAAATGTTACCACTTTGTGTTTCAACGATATCGCCTGGAGCACTATACTGT  1244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  723  CAGCACAGTTTTCTGTACTTCCAGAAATGTTACCACTTTGTGTTTCAACGATATCGCCTGGAGCACTATACTGT  796

Query 1245  GACATCGAATTGGCTGGCATTAGGAACTGTCTTCCTGTTTGGGCTCTTGTCATTTTCTCGCTCTGTGGCACTGT  1318
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  797  GACATCGAATTGGCTGGCATTAGGAACTGTCTTCCTGTTTGGGCTCTTGTCATTTTCTCGCTCTGTGGCACTGT  870

Query 1319  TCAGAGGATATCACGGGCCCCTTGATTTGTATCCAGAATTTTACCGAATTGCTACAGACCCAACCATCCACACT  1392
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  871  TCAGAGGATATCACGGGCCCCTTGATTTGTATCCAGAATTTTACCGAATTGCTACAGACCCAACCATCCACACT  944

Query 1393  GTCCCAGAAGGCAGACCTGTGAATGTCTGTGTGGGAAAAGAGTGGTATCGATTTCCCAGCAGCTTCCTTCTTCC  1466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  945  GTCCCAGAAGGCAGACCTGTGAATGTCTGTGTGGGAAAAGAGTGGTATCGATTTCCCAGCAGCTTCCTTCTTCC  1018

Query 1467  TGACAATTGGCAGCTTCAGTTCATTCCATCAGAGTTCAGAGGTCAGTTACCAAAACCTTTTGCAGAAGGACCTC  1540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019  TGACAATTGGCAGCTTCAGTTCATTCCATCAGAGTTCAGAGGTCAGTTACCAAAACCTTTTGCAGAAGGACCTC  1092

Query 1541  TGGCCACCCGGATTGTTCCTACTGACATGAATGACCAGAATCTAGAAGAGCCATCCAGATATATTGATATCAGT  1614
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093  TGGCCACCCGGATTGTTCCTACTGACATGAATGACCAGAATCTAGAAGAGCCATCCAGATATATTGATATCAGT  1166

Query 1615  AAATGCCATTATTTAGTGGATTTGGACACCATGAGAGAAACACCCCGGGAGCCAAAATATTCATCCAATAAAGA  1688
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1167  AAATGCCATTATTTAGTGGATTTGGACACCATGAGAGAAACACCCCGGGAGCCAAAATATTCATCCAATAAAGA  1240

Query 1689  AGAATGGATCAGCTTGGCCTATAGACCATTCCTTGATGCTTCTAGATCTTCAAAGCTGCTGCGGGCATTCTATG  1762
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241  AGAATGGATCAGCTTGGCCTATAGACCATTCCTTGATGCTTCTAGATCTTCAAAGCTGCTGCGGGCATTCTATG  1314

Query 1763  TCCCCTTCCTGTCAGATCAGTATACAGTGTACGTAAACTACACCATCCTCAAACCCCGGAAAGCAAAGCAAATC  1836
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315  TCCCCTTCCTGTCAGATCAGTATACAGTGTACGTAAACTACACCATCCTCAAACCCCGGAAAGCAAAGCAAATC  1388

Query 1837  AGGAAGAAAAGTGGAGGT--------------------------------------------------------  1854
            ||||||||||||||||..                                                        
Sbjct 1389  AGGAAGAAAAGTGGAGACCGGAGAAGAGCAGAACCAACTTACAGGAAGAATTGAAAATCCTGGTACTGGATGGC  1462

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 1463  TGTGATAAGCTGTTCTCCACACTCTGGCCTGGCATCTGAGAACTAGCAAGCCTCTCTTAGGCCATATGGGCTTC  1536

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 1537  TCCACCAAAGCTGTTTGGCAGCTCCTAGCAGACCTTCTTATTGAAATCCTCATGCTGAAAATGAACACAGCCTA  1610

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 1611  GTTGCCAACCCACATGTCCTTTTCACCTCCAGCAAGACTAAGCTTCTTTAAAGCACTTCACAGGACTAGGACCC  1684

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 1685  TGTCCTGGAGCTATCTCAGGAAAAAGGTGATCTAGCTAACAGGTAGCTAGAGTTGAACACCACTGCTCTGGATA  1758

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 1759  AAGACTGAGAGACTAACAATCACACCAAAAAATCAAAGGTAATTAAACAGGCAACATATTTGGTGTCCTTTTCT  1832

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 1833  AATTGTGACTCCTGGTTACCCAGGCCTTCATCTAGGCCTCTTCCCCACCACAGACCTATTTCTCTGTCTACTCC  1906

Query 1855  ---------------------------------------------------------  1854
                                                                     
Sbjct 1907  AGCCCATCAAACCTTACCTGCCCTCTCTCCCATTCCCTCTGGGCCCTGCTTTCTGGG  1963

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