Nucleotide Global Alignment

Description

Query:
ccsbBroad304_04128
Subject:
XR_001747979.1
Aligned Length:
2461
Identities:
1770
Gaps:
671

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTGGCGCGCGGGGCTCAGTCCGGCCTGGCCTCACCGCGGGAGGCCCGAGCTCCCTCTTCAGCTAGGTCCTATTG  74

Query    1  ----------------------------------------------------------------ATGGCTAGTC  10
                                                                            .||.||  |.
Sbjct   75  GTCTTCCTGGGCGGGTCAGCATTCAGTCTTCGCCCACCTTAGATCCCTCCACTGCGCTGTAAAACTGCCT--TG  146

Query   11  GAGGG------------GCTC----GGCAGCGCCTGAAGGGCAGCGGGGCCAG---CAGTGGG-GA--------  56
            |||.|            ||||    |.||| ||||  ||   ||.|||..|||   |.||||| ||        
Sbjct  147  GAGTGCGGATCTGTGATGCTCCTGGGCCAG-GCCT--AG---AGTGGGCACAGCCTCTGTGGGAGATGTAGACA  214

Query   57  --------------------TACGGC-------------------------CCC--------------------  65
                                ||||||                         |||                    
Sbjct  215  GGATCAAAGAGTATACCTTTTACGGCTGTTCCTCACAGCTCCTTTTATTCTCCCTCAAGTCCCGACCCTTTACT  288

Query   66  -----------------------------------------GGCTGCGG---ACAAGCTGC-----GGGAGCTG  90
                                                     ||||||.|   |.|| ||||     ||||||||
Sbjct  289  GGGCCCATCCAACCCGCCATCACCTCTTCCCAAACCCTGGAGGCTGCAGGTTAGAA-CTGCATTAAGGGAGCTG  361

Query   91  -------CTGG-------GCAGCCGA-------------GAGGC----------------GGGCG---------  112
                   .|||       |.||.|.|             .||||                |||.|         
Sbjct  362  TCAACATATGGAATTGGAGTAGGCTATGTACCTTGCACCTAGGCTTCTATCTGAACATAAGGGGGAATGAATAA  435

Query  113  -GC--------GC----------------------------GGAG-----CACC-----GGAC--CGAGTTATC  137
             ||        ||                            ||||     ||.|     ||.|  |.|||||||
Sbjct  436  AGCCATCAAAAGCAATGACCTTGTTAAGAAAAGAAAGAAAAGGAGAATGACAGCTTTGTGGCCTTCAAGTTATC  509

Query  138  TGGGAACAAAGCAGGACAAGTCTGGGCACCTGAAGGATCTACTGCTTTCAAGTGTCTGCTTTCAGCAAGGTTAT  211
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  510  TGGGAACAAAGCAGGACAAGTCTGGGCACCTGAAGGATCTACTGCTTTCAAGTGTCTGCTTTCAGCAAGGTTAT  583

Query  212  GTGCTGCTCTCCTGAGCAACATCTCTGACTGTGATGAAACATTCAACTACTGGGAGCCA----ACACACTACCT  281
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||
Sbjct  584  GTGCTGCTCTCCTGAGCAACATCTCTGACTGTGATGAAACATTCAACTACTGGGAGCCAGTAGACACACTACCT  657

Query  282  CATCTATGGGGAAGGGTTTCAGACTTGGGAATATTCCCCAGCATATGCCATTCGCTCCTATGCTTACCTGTTGC  355
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  658  CATCTATGGGGAAGGGTTTCAGACTTGGGAATATTCCCCAGCATATGCCATTCGCTCCTATGCTTACCTGTTGC  731

Query  356  TTCATGCCTGGCCAGCTGCATTTCATGCAAGAATTCTACAAACTAATAAGATTCTTGTGTTTTACTTTTTGCGA  429
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  732  TTCATGCCTGGCCAGCTGCATTTCATGCAAGAATTCTACAAACTAATAAGATTCTTGTGTTTTACTTTTTGCGA  805

Query  430  TGTCTTCTGGCTTTTGTGAGCTGTATTTGTGAACTTTACTTTTACAAGGCTGTGTGCAAGAAGTTTGGGTTGCA  503
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  806  TGTCTTCTGGCTTTTGTGAGCTGTATTTGTGAACTTTACTTTTACAAGGCTGTGTGCAAGAAGTTTGGGTTGCA  879

Query  504  CGTGAGTCGAATGATGCTAGCCTTCTTGGTTCTCAGCACTGGCATGTTTTGCTCATCATCAGCATTCCTTCCTA  577
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  880  CGTGAGTCGAATGATGCTAGCCTTCTTGGTTCTCAGCACTGGCATGTTTTGCTCATCATCAGCATTCCTTCCTA  953

Query  578  GTAGCTTCTGTATGTACACTACGTTGATAGCCATGACTGGATGGTATATGGACAAGACTTCCATTGCTGTGCTG  651
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  954  GTAGCTTCTGTATGTACACTACGTTGATAGCCATGACTGGATGGTATATGGACAAGACTTCCATTGCTGTGCTG  1027

Query  652  GGAGTAGCAGCTGGGGCTATCTTAGGCTGGCCATTCAGTGCAGCTCTTGGTTTACCCATTGCCTTTGATTTGCT  725
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028  GGAGTAGCAGCTGGGGCTATCTTAGGCTGGCCATTCAGTGCAGCTCTTGGTTTACCCATTGCCTTTGATTTGCT  1101

Query  726  GGTCATGAAACACAGGTGGAAGAGTTTCTTTCATTGGTCGCTGATGGCCCTCATACTATTTCTGGTGCCTGTGG  799
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102  GGTCATGAAACACAGGTGGAAGAGTTTCTTTCATTGGTCGCTGATGGCCCTCATACTATTTCTGGTGCCTGTGG  1175

Query  800  TGGTCATTGACAGCTACTATTATGGGAAGTTGGTGATTGCACCACTCAACATTGTTTTGTATAATGTCTTTACT  873
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176  TGGTCATTGACAGCTACTATTATGGGAAGTTGGTGATTGCACCACTCAACATTGTTTTGTATAATGTCTTTACT  1249

Query  874  CCTCATGGACCTGATCTTTATGGTACAGAACCCTGGTATTTCTATTTAATTAATGGATTTCTGAATTTCAATGT  947
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250  CCTCATGGACCTGATCTTTATGGTACAGAACCCTGGTATTTCTATTTAATTAATGGATTTCTGAATTTCAATGT  1323

Query  948  AGCCTTTGCTTTGGCTCTCCTAGTCCTACCACTGACTTCTCTTATGGAATACCTGCTGCAGAGATTTCATGTTC  1021
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324  AGCCTTTGCTTTGGCTCTCCTAGTCCTACCACTGACTTCTCTTATGGAATACCTGCTGCAGAGATTTCATGTTC  1397

Query 1022  AGAATTTAGGCCACCCGTATTGGCTTACCTTGGCTCCAATGTATATTTGGTTTATAATTTTCTTCATCCAGCCT  1095
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398  AGAATTTAGGCCACCCGTATTGGCTTACCTTGGCTCCAATGTATATTTGGTTTATAATTTTCTTCATCCAGCCT  1471

Query 1096  CACAAAGAGGAGAGATTTCTTTTCCCTGTGTATCCACTTATATGTCTCTGTGGCGCTGTGGCTCTCTCTGCACT  1169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1472  CACAAAGAGGAGAGATTTCTTTTCCCTGTGTATCCACTTATATGTCTCTGTGGCGCTGTGGCTCTCTCTGCACT  1545

Query 1170  TCAGCACAGTTTTCTGTACTTCCAGAAATGTTACCACTTTGTGTTTCAACGATATCGCCTGGAGCACTATACTG  1243
            |                     ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546  T---------------------CAGAAATGTTACCACTTTGTGTTTCAACGATATCGCCTGGAGCACTATACTG  1598

Query 1244  TGACATCGAATTGGCTGGCATTAGGAACTGTCTTCCTGTTTGGGCTCTTGTCATTTTCTCGCTCTGTGGCACTG  1317
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1599  TGACATCGAATTGGCTGGCATTAGGAACTGTCTTCCTGTTTGGGCTCTTGTCATTTTCTCGCTCTGTGGCACTG  1672

Query 1318  TTCAGAGGATATCACGGGCCCCTTGATTTGTATCCAGAATTTTACCGAATTGCTACAGACCCAACCATCCACAC  1391
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673  TTCAGAGGATATCACGGGCCCCTTGATTTGTATCCAGAATTTTACCGAATTGCTACAGACCCAACCATCCACAC  1746

Query 1392  TGTCCCAGAAGGCAGACCTGTGAATGTCTGTGTGGGAAAAGAGTGGTATCGATTTCCCAGCAGCTTCCTTCTTC  1465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1747  TGTCCCAGAAGGCAGACCTGTGAATGTCTGTGTGGGAAAAGAGTGGTATCGATTTCCCAGCAGCTTCCTTCTTC  1820

Query 1466  CTGACAATTGGCAGCTTCAGTTCATTCCATCAGAGTTCAGAGGTCAGTTACCAAAACCTTTTGCAGAAGGACCT  1539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1821  CTGACAATTGGCAGCTTCAGTTCATTCCATCAGAGTTCAGAGGTCAGTTACCAAAACCTTTTGCAGAAGGACCT  1894

Query 1540  CTGGCCACCCGGATTGTTCCTACTGACATGAATGACCAGAATCTAGAAGAGCCATCCAGATATATTGATATCAG  1613
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1895  CTGGCCACCCGGATTGTTCCTACTGACATGAATGACCAGAATCTAGAAGAGCCATCCAGATATATTGATATCAG  1968

Query 1614  TAAATGCCATTATTTAGTGGATTTGGACACCATGAGAGAAACACCCCGGGAGCCAAAATATTCATCCAATAAAG  1687
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1969  TAAATGCCATTATTTAGTGGATTTGGACACCATGAGAGAAACACCCCGGGAGCCAAAATATTCATCCAATAAAG  2042

Query 1688  AAGAATGGATCAGCTTGGCCTATAGACCATTCCTTGATGCTTC-------------------------------  1730
            |||||||||||||||||||||||||||||||||||||||||||                               
Sbjct 2043  AAGAATGGATCAGCTTGGCCTATAGACCATTCCTTGATGCTTCTAGTTTTGAAGGCTGGAAGACCAAGATCACG  2116

Query 1731  --------------------------------------------------------------------------  1730
                                                                                      
Sbjct 2117  ATGCCAGTATAGTCAAGTTCTGGTAAAGGCCATCTTTCTGGCTGCAGACAGCTGACTTGTATCCTCACATGGCT  2190

Query 1731  --------------------------------------------------------------------------  1730
                                                                                      
Sbjct 2191  GCAAGAAGACAAGCTAGCTCTCTAGCCTCTTCTTATAAGGACATTAATCCCATTGTTGAGTGCTCCACTCTTTT  2264

Query 1731  -------------------------------------------TAGATCTTCAAAGCTGCTGCGGGCATTCTAT  1761
                                                       |||||||||||||||||||||||||||||||
Sbjct 2265  GACCTAATTCCCTTCCAAAGGCCCACCTCCAAATACCATCACATAGATCTTCAAAGCTGCTGCGGGCATTCTAT  2338

Query 1762  GTCCCCTTCCTGTCAGATCAGTATACAGTGTACGTAAACTACACCATCCTCAAACCCCGGAAAGCAAAGCAAAT  1835
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               
Sbjct 2339  GTCCCCTTCCTGTCAGATCAGTATACAGTGTACGTAAACTACACCATCCTCAAACCCCG---------------  2397

Query 1836  CAGGAAGAAAAGTGGAGGT  1854
                               
Sbjct 2398  -------------------  2397

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