Nucleotide Global Alignment

Description

Query:
ccsbBroad304_05013
Subject:
XM_017000376.2
Aligned Length:
1233
Identities:
1068
Gaps:
165

Alignment

Query    1  ATGACCCATTGGTTTCATAGGAACCCATTAAAAGCCACAGCTCCTGTGTCTTTTAATTACTATGGTGTAGTCAC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  TGGCCCTTCTGCTTCAAAAATATGCAATGACTTGAGGTCATCCAGGGCACGACTCCTTGAACTGTTCACTGATT  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  TGAGCTGTAATCCAGAAATGATGAAGAATGCAGCAGATTCATATTTCTCACTTTTACAAGGTTTCATAAATTCT  222
                             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  -----------------ATGATGAAGAATGCAGCAGATTCATATTTCTCACTTTTACAAGGTTTCATAAATTCT  57

Query  223  TTGGATGAATCTACCCAAGAAAGCAAGTTACGATATATTCAAAATTTCAAGTGGACTGATACATTGCAAGGACA  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   58  TTGGATGAATCTACCCAAGAAAGCAAGTTACGATATATTCAAAATTTCAAGTGGACTGATACATTGCAAGGACA  131

Query  297  GGTTCCAAGTGCCCAGCAGGATGCTGTTTTTGAATTAATTTCCATGGGATTTAATGTAGCTTTATGGTATACCA  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  132  GGTTCCAAGTGCCCAGCAGGATGCTGTTTTTGAATTAATTTCCATGGGATTTAATGTAGCTTTATGGTATACCA  205

Query  371  AATATGCTTCAAGACTGGCTGGAAAAGAAAATATAACAGAAGATGAAGCAAAAGAAGTTCATCGAAGCCTAAAG  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  206  AATATGCTTCAAGACTGGCTGGAAAAGAAAATATAACAGAAGATGAAGCAAAAGAAGTTCATCGAAGCCTAAAG  279

Query  445  ATTGCAGCTGGGATTTTTAAACATTTAAAGGAAAGTCATCTCCCAAAACTCATTACACCTGCGGAAAAAGGAAG  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  280  ATTGCAGCTGGGATTTTTAAACATTTAAAGGAAAGTCATCTCCCAAAACTCATTACACCTGCGGAAAAAGGAAG  353

Query  519  AGATTTAGAGTCACGACTCATAGAAGCATACGTTATTCAATGTCAGGCTGAAGCTCAAGAAGTAACAATTGCTC  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  354  AGATTTAGAGTCACGACTCATAGAAGCATACGTTATTCAATGTCAGGCTGAAGCTCAAGAAGTAACAATTGCTC  427

Query  593  GAGCAATTGAACTAAAACATGCTCCTGGACTAATTGCTGCACTGGCGTATGAAACAGCCAATTTCTATCAAAAA  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  428  GAGCAATTGAACTAAAACATGCTCCTGGACTAATTGCTGCACTGGCGTATGAAACAGCCAATTTCTATCAAAAA  501

Query  667  GCTGATCATACTTTATCCAGTTTGGAGCCTGCATATTCTGCCAAATGGAGAAAATATCTTCACTTGAAGATGTG  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  502  GCTGATCATACTTTATCCAGTTTGGAGCCTGCATATTCTGCCAAATGGAGAAAATATCTTCACTTGAAGATGTG  575

Query  741  TTTCTACACAGCTTATGCTTACTGTTACCATGGTGAGACTTTATTGGCTAGTGATAAATGCGGTGAAGCAATCA  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  576  TTTCTACACAGCTTATGCTTACTGTTACCATGGTGAGACTTTATTGGCTAGTGATAAATGCGGTGAAGCAATCA  649

Query  815  GGTCTCTCCAAGAAGCAGAAAAATTGTATGCAAAGGCAGAAGCACTGTGTAAAGAATATGGAGAAACCAAAGGA  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  650  GGTCTCTCCAAGAAGCAGAAAAATTGTATGCAAAGGCAGAAGCACTGTGTAAAGAATATGGAGAAACCAAAGGA  723

Query  889  CCTGGACCAACAGTCAAACCTTCAGGACATCTGTTCTTTAGGAAACTTGGAAACCTTGTGAAGAACACCCTAGA  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  724  CCTGGACCAACAGTCAAACCTTCAGGACATCTGTTCTTTAGGAAACTTGGAAACCTTGTGAAGAACACCCTAGA  797

Query  963  AAAATGTCAGAGAGAAAATGGATTTATTTACTTTCAAAAAATTCCAACAGAAGCCCCACAGCTGGAACTCAAAG  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  798  AAAATGTCAGAGAGAAAATGGATTTATTTACTTTCAAAAAATTCCAACAGAAGCCCCACAGCTGGAACTCAAAG  871

Query 1037  CAAATTATGGTCTCGTAGAGCCTATACCTTTCGAATTTCCTCCTACAAGTGTTCAGTGGACACCAGAAACATTG  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  872  CAAATTATGGTCTCGTAGAGCCTATACCTTTCGAATTTCCTCCTACAAGTGTTCAGTGGACACCAGAAACATTG  945

Query 1111  GCTGCATTTGATCTCACCAAAAGACCCAAGGATGACAGTACTAAACCCAAACCAGAAGAAGAAGTGAAACCTGT  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  946  GCTGCATTTGATCTCACCAAAAGACCCAAGGATGACAGTACTAAACCCAAACCAGAAGAAGAAGTGAAACCTGT  1019

Query 1185  GAAAGAACCAGACATCAAACCTCAAAAGGACACTGGGTGCTACATCTCC  1233
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020  GAAAGAACCAGACATCAAACCTCAAAAGGACACTGGGTGCTACATCTCC  1068

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.