Nucleotide Global Alignment

Description

Query:
ccsbBroad304_05013
Subject:
XR_001736986.1
Aligned Length:
3756
Identities:
1217
Gaps:
2539

Alignment

Query    1  ------------------------------------------ATGACCCATTGGTTTCATAGGAACCCATTAAA  32
                                                      ||||||||||||||||||||||||||||||||
Sbjct    1  GCTCAGAGCTCGGGGGCGGCGCTCAGAAAACATCTGGAGAAAATGACCCATTGGTTTCATAGGAACCCATTAAA  74

Query   33  AGCCACAGCTCCTGTGTCTTTTAATTACTATGGTGTAGTCACTGGCCCTTCTGCTTCAAAAATATGCAATGACT  106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  AGCCACAGCTCCTGTGTCTTTTAATTACTATGGTGTAGTCACTGGCCCTTCTGCTTCAAAAATATGCAATGACT  148

Query  107  TGAGGTCATCCAGGGCACGACTCCTTGAACTGTTCACTGATTTGAGCTGTAATCCAGAAATGATGAAGAATGCA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  TGAGGTCATCCAGGGCACGACTCCTTGAACTGTTCACTGATTTGAGCTGTAATCCAGAAATGATGAAGAATGCA  222

Query  181  GCAGATTCATATTTCTCACTTTTACAAGGTTTCATAAATTCTTTGGATGAATCTACCCAAGAAAGCAAGTTACG  254
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GCAGATTCATATTTCTCACTTTTACAAGGTTTCATAAATTCTTTGGATGAATCTACCCAAGAAAGCAAGTTACG  296

Query  255  ATATATTCAAAATTTCAAGTGGACTGATACATTGCAAGGACAGGTTCCAAGTGCCCAGCAGGATGCTGTTTTTG  328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  ATATATTCAAAATTTCAAGTGGACTGATACATTGCAAGGACAGGTTCCAAGTGCCCAGCAGGATGCTGTTTTTG  370

Query  329  AATTAATTTCCATGGGATTTAATGTAGCTTTATGGTATACCAAATATGCTTCAAGACTGGCTGGAAAAGAAAAT  402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AATTAATTTCCATGGGATTTAATGTAGCTTTATGGTATACCAAATATGCTTCAAGACTGGCTGGAAAAGAAAAT  444

Query  403  ATAACAGAAGATGAAGCAAAAGAAGTTCATCGAAGCCTAAAGATTGCAGCTGGGATTTTTAAACATTTAAAGGA  476
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  ATAACAGAAGATGAAGCAAAAGAAGTTCATCGAAGCCTAAAGATTGCAGCTGGGATTTTTAAACATTTAAAGGA  518

Query  477  AAGTCATCTCCCAAAACTCATTACACCTGCGGAAAAAGGAAGAGATTTAGAGTCACGACTCATAGAAGCATACG  550
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  AAGTCATCTCCCAAAACTCATTACACCTGCGGAAAAAGGAAGAGATTTAGAGTCACGACTCATAGAAGCATACG  592

Query  551  TTATTCAATGTCAGGCTGAAGCTCAAGAAGTAACAATTGCTCGAGCAATTGAACTAAAACATGCTCCTGGACTA  624
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TTATTCAATGTCAGGCTGAAGCTCAAGAAGTAACAATTGCTCGAGCAATTGAACTAAAACATGCTCCTGGACTA  666

Query  625  ATTGCTGCACTGGCGTATGAAACAGCCAATTTCTATCAAAAAGCTGATCATACTTTATCCAGTTTGGAGCCTGC  698
            |||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||
Sbjct  667  ATTGCTGCACTGGCGTATGAAACAGCCAATTTCTATCAAAAAGCT----------------GTTTGGAGCCTGC  724

Query  699  ATATTCTGCCAAATGGAGAAAATATCTTCACTTGAAGATGTGTTTCTACACAGCTTATGCTTACTGTTACCATG  772
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  725  ATATTCTGCCAAATGGAGAAAATATCTTCACTTGAAGATGTGTTTCTACACAGCTTATGCTTACTGTTACCATG  798

Query  773  GTGAGACTTTATTGGCTAGTGATAAATGCGGTGAAGCAATCAGGTCTCTCCAAGAAGCAGAAAAATTGTATGCA  846
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  799  GTGAGACTTTATTGGCTAGTGATAAATGCGGTGAAGCAATCAGGTCTCTCCAAGAAGCAGAAAAATTGTATGCA  872

Query  847  AAGGCAGAAGCACTGTGTAAAGAATATGGAGAAACCAAAGGACCTGGACCAACAGTCAAACCTTCAGGACATCT  920
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  873  AAGGCAGAAGCACTGTGTAAAGAATATGGAGAAACCAAAGGACCTGGACCAACAGTCAAACCTTCAGGACATCT  946

Query  921  GTTCTTTAGGAAACTTGGAAACCTTGTGAAGAACACCCTAGAAAAATGTCAGAGAGAAAATGGATTTATTTACT  994
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  947  GTTCTTTAGGAAACTTGGAAACCTTGTGAAGAACACCCTAGAAAAATGTCAGAGAGAAAATGGATTTATTTACT  1020

Query  995  TTCAAAAAATTCCAACAGAAGCCCCACAGCTGGAACTCAAAGCAAATTATGGTCTCGTAGAGCCTATACCTTTC  1068
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021  TTCAAAAAATTCCAACAGAAGCCCCACAGCTGGAACTCAAAGCAAATTATGGTCTCGTAGAGCCTATACCTTTC  1094

Query 1069  GAATTTCCTCCTACAAGTGTTCAGTGGACACCAGAAACATTGGCTGCATTTGATCTCACCAAAAGACCCAAGGA  1142
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1095  GAATTTCCTCCTACAAGTGTTCAGTGGACACCAGAAACATTGGCTGCATTTGATCTCACCAAAAGACCCAAGGA  1168

Query 1143  TGACAGTACTAAACCCAAACCAGAAGAAGAAGTGAAACCTGTGAAAGAACCAGACATCAAACCTCAAAAGGACA  1216
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169  TGACAGTACTAAACCCAAACCAGAAGAAGAAGTGAAACCTGTGAAAGAACCAGACATCAAACCTCAAAAGGACA  1242

Query 1217  CTGGGTGCTACATCTCC---------------------------------------------------------  1233
            |||||||||||||||||                                                         
Sbjct 1243  CTGGGTGCTACATCTCCTAAAATACAACTTGCACTTAGAATTTCTCTAGCAGTAAATAAGATAAACCACAGAAT  1316

Query 1234  --------------------------------------------------------------------------  1233
                                                                                      
Sbjct 1317  TTCAGTTCTTATTTCTCAAAATGATTTCTCTGAAGCTTGTAGAATAACTATTATATTCAGAGGGTTATCTGCCT  1390

Query 1234  --------------------------------------------------------------------------  1233
                                                                                      
Sbjct 1391  TCAGCTTACTTGTTCTTAATTTTTAATACAGCGGAGATGTTTCTTGCTTTGTTTTCAGACTCTCCTTTTTAATC  1464

Query 1234  --------------------------------------------------------------------------  1233
                                                                                      
Sbjct 1465  AGGACAACATTTGAAAGATTTTATTGTGCCTCTAAAGGGTATATTTGGGGGTTGGGTCTTTTTGTTAAACTCTG  1538

Query 1234  --------------------------------------------------------------------------  1233
                                                                                      
Sbjct 1539  GATAGTAATAAGTTTCAGGTCAGTATAGGCCCGAATCATGTGGTTTCAGGTATGTTTTTCTTTTTTCTTTTTCT  1612

Query 1234  --------------------------------------------------------------------------  1233
                                                                                      
Sbjct 1613  TTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTGAGGTGGAGTCTCCCTCTGTTGCCCAGGCTGGAGTGCAGTG  1686

Query 1234  --------------------------------------------------------------------------  1233
                                                                                      
Sbjct 1687  GCATGATCTCGGCTCACTGCAACCCTCCACCTCCTGAATTAAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGC  1760

Query 1234  --------------------------------------------------------------------------  1233
                                                                                      
Sbjct 1761  TGGGATTACAGGCACGCACCACTACACCCAGATAATTTTTGTATTTTTAGTAGAGACGTGATTTCACCATGTTG  1834

Query 1234  --------------------------------------------------------------------------  1233
                                                                                      
Sbjct 1835  GCCAGGCTGGTCTCGAACTCCTGACCTCAGCTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGC  1908

Query 1234  --------------------------------------------------------------------------  1233
                                                                                      
Sbjct 1909  GTGATCCACTGCACCTGGCCTCAGGTATGTTTTTCTATCTACACACAAAAAGTTTATTTTCCTTCCTCTTATTT  1982

Query 1234  --------------------------------------------------------------------------  1233
                                                                                      
Sbjct 1983  GATATCAGAAGAATGACAGGAATCAGTTTTTAACAGAGATAGTTTTTCCGTTTCTCCATTGTGTTAATCAGAGC  2056

Query 1234  --------------------------------------------------------------------------  1233
                                                                                      
Sbjct 2057  GCAGACTTACATTCTCAGTCATTTATCTTTTCTGGTGGAGAATAAAAAGTCACTTATAGTTAAAGATCAGAAAA  2130

Query 1234  --------------------------------------------------------------------------  1233
                                                                                      
Sbjct 2131  TTATCACACCAAATCCATTACATATGTTAGAATCAATAATTTACTCAAAAATCAGCTTTTATAGGTATGTTGGC  2204

Query 1234  --------------------------------------------------------------------------  1233
                                                                                      
Sbjct 2205  ACCTTATCCAAGAACTTATCCCTGTTCCAGTACCCCTGTGCTTCATTCAGTATCAGTAACCCTGCAATGATTTT  2278

Query 1234  --------------------------------------------------------------------------  1233
                                                                                      
Sbjct 2279  TACAAATATCTTTTTCTAGTGGGTTTTTTACTTAGAGGAAAGAACTTTGTAATAGCTCTTAATGTTTATATATA  2352

Query 1234  --------------------------------------------------------------------------  1233
                                                                                      
Sbjct 2353  AGAGAAGACAGAATGGAAAATGTTTTTTGAAGTCAAATATTGCATGATGTAAAGAAAAAACTTTAAACTTAAAT  2426

Query 1234  --------------------------------------------------------------------------  1233
                                                                                      
Sbjct 2427  GAGTAGGTTGTCCTGAATTACACTGGTAACTCTCTACTTCTTTATTAAAGAAGTTATAGTAAGATGCCTTTGTT  2500

Query 1234  --------------------------------------------------------------------------  1233
                                                                                      
Sbjct 2501  ACCTGATTTCAGTGTACATTGTTTTTATGTGGTTTTCTGATAATGTCCTGTCAGAATTGTATTGGTTTAGGCCA  2574

Query 1234  --------------------------------------------------------------------------  1233
                                                                                      
Sbjct 2575  AAGGCCATAGCAAAAACATAGAGAACAAATATGATCTTAAAAATAGATTGTAACATTTTAAACAATTAGTTTAG  2648

Query 1234  --------------------------------------------------------------------------  1233
                                                                                      
Sbjct 2649  TAATTTGGGAAATAGTGGATGCATAATACTTTAACAGAAGTCACACATCTGTAGGTTTATCTTTTGATTATTCT  2722

Query 1234  --------------------------------------------------------------------------  1233
                                                                                      
Sbjct 2723  CCTGAGGCATTAGATAGTTTTTCTATTATAAGTGACAGATTGACTCACTTAATATAAATAAGTAGCATACACTA  2796

Query 1234  --------------------------------------------------------------------------  1233
                                                                                      
Sbjct 2797  AAAGCTTACTATGTGCCAGATACTGTGCTGGACACTTACATAGATAAGCCATTGAATCCACACAGCAGCCCTGT  2870

Query 1234  --------------------------------------------------------------------------  1233
                                                                                      
Sbjct 2871  AAGAAATAAGTAAAATCTGCATAAAGTGTTGAAATAGGAATATACATTTCATTATGAAAAATGAATAGATTATG  2944

Query 1234  --------------------------------------------------------------------------  1233
                                                                                      
Sbjct 2945  CCTATCTGAATCAATATTGCATTCAAATAAGTGATTACTTAAATCATATATCATAGTTTACACTCCTTAAAAAA  3018

Query 1234  --------------------------------------------------------------------------  1233
                                                                                      
Sbjct 3019  AGGTACATAAATTCAGTGAGGTTTTTTTCTTAACATACAGAAGTACTAAATACTGCTTGCAGTATAATATTGAT  3092

Query 1234  --------------------------------------------------------------------------  1233
                                                                                      
Sbjct 3093  ATTGGAAGCTGCAGTTTCCAGAATAAGTGGAGTAATAACTAAACAGACATTTAATTTTATTTCAATATCTATGG  3166

Query 1234  --------------------------------------------------------------------------  1233
                                                                                      
Sbjct 3167  AAAAAACACTTATTAAATCTCCCTGTATTTTATGTTGTCTTTATTACAGAATCACTTGTCTGTTTGTTGTGTGC  3240

Query 1234  --------------------------------------------------------------------------  1233
                                                                                      
Sbjct 3241  CACTTACTGACAAAACTTTAAACAGTACTTGATGCCAGCTCTCTACTCTGTGGCTGTGGGACCTGTTTCTTTTA  3314

Query 1234  --------------------------------------------------------------------------  1233
                                                                                      
Sbjct 3315  GGTACTTGTGCTTATTAATCTACTTACTAAATTTTCACATTGACATTTTTGGGGATGATACTACCATATACGAA  3388

Query 1234  --------------------------------------------------------------------------  1233
                                                                                      
Sbjct 3389  ATGGAAAATGTAATATGCTCAGTGCTTCTGTAAAATGCAGCAATACTGGTATTACTTTACATCAGTAGGCATCT  3462

Query 1234  --------------------------------------------------------------------------  1233
                                                                                      
Sbjct 3463  TTGACATGAGCATATAAATATTTTGTTGACTCAGCAAAGGTGACACTTTGTGACTAAAGTATCCCATTATATAT  3536

Query 1234  --------------------------------------------------------------------------  1233
                                                                                      
Sbjct 3537  AATGTTTTTTGAAATGTTGGAAATTTTGGGGAATTATCAAATGTATAGAAGTTGCATGAAGGTTATAGAGAGGT  3610

Query 1234  --------------------------------------------------------------------------  1233
                                                                                      
Sbjct 3611  GTAACTGTTTGTTAACTATTACATGGATTTCATACTAGGCAGTGACAACTAACATGTTACTTCAACTAAAAGTG  3684

Query 1234  --------------------------------------------------------  1233
                                                                    
Sbjct 3685  TATAATGGGTTGTCTTTTTATTTATGAAAATAAAAGTAATTTTACTTACAATTTCA  3740

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