Nucleotide Global Alignment

Description

Query:
ccsbBroad304_05101
Subject:
NR_158606.1
Aligned Length:
2248
Identities:
585
Gaps:
1663

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTTTTGGCCGGAAAGGCTTACCATGAGTTGCCAGGGCTGAGAGAGATGGAGAAGGATTCGCGGCGGTGACAGAT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TAAATTCCCCAGTTACATTATAGACTTGGAGACTTGTCCTTGTGTGGACGGGAGCCGGAAAGCCTTGAGAACTT  148

Query    1  ----------------ATGGCACAGGAGAAAATGAAACTAGGTTTCAAGTCGCTGCCGAGTTCCACTACCGCAG  58
                            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  ATTCCTCGACCCGGACATGGCACAGGAGAAAATGAAACTAGGTTTCAAGTCGCTGCCGAGTTCCACTACCGCAG  222

Query   59  ACGGCAACATTCTGAGAAGAGTCAACAGTGCCCCTTTGATCAATGGACTTGGTTTTAATTCACAGGTGTTGCAA  132
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  ACGGCAACATTCTGAGAAGAGTCAACAGTGCCCCTTTGATCAATGGACTTGGTTTTAATTCACAGGTGTTGCAA  296

Query  133  GCTGACATGTTAAGAATTAGGACAAACAGAACAACATTTAGGAATCGACGCTCTCTGTTGTTGCCACCTCCTCC  206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GCTGACATGTTAAGAATTAGGACAAACAGAACAACATTTAGGAATCGACGCTCTCTGTTGTTGCCACCTCCTCC  370

Query  207  CTTTCATGGTTCCATCAGCCGCCTTCATCAAATCAAAC------------------------------------  244
            ||||||||||||||||||||||||||||||||||||||                                    
Sbjct  371  CTTTCATGGTTCCATCAGCCGCCTTCATCAAATCAAACAGTCTCCCTCTGATGCCGAGCGGAAGCTGGACTGTA  444

Query  245  --------------------------------------------------------------------------  244
                                                                                      
Sbjct  445  CTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGC  518

Query  245  --------------------------------------------------------------------------  244
                                                                                      
Sbjct  519  AGGCGCGCGCAGCCACACCTGACTGGTTTTCGTATTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGC  592

Query  245  --------------------------------------------------------------------------  244
                                                                                      
Sbjct  593  TGGTCTCCAGCTCCTAACCGCAAGTGATCTGCCAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCT  666

Query  245  --------------------------------------------------------------------------  244
                                                                                      
Sbjct  667  GGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCTCCACCTC  740

Query  245  --------------------------------------------------------------------------  244
                                                                                      
Sbjct  741  CCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTG  814

Query  245  --------------------------------------------------------------------------  244
                                                                                      
Sbjct  815  AGGAGCATCTCTGCCTGGCCGCCCATCGTCTGGGAGGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAG  888

Query  245  --------------------------------------------------------------------------  244
                                                                                      
Sbjct  889  TGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCGGCCGCCATCCCATCT  962

Query  245  --------------------------------------------------------------------------  244
                                                                                      
Sbjct  963  AGGAAGTGAGGAGCGTCTCTGCCCCGCTGCCCCGTCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGCGACCCCG  1036

Query  245  --------------------------------------------------------------------------  244
                                                                                      
Sbjct 1037  TCTGGGAGGTGAGGAGCATCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCCGCCTGGCAACCGCC  1110

Query  245  --------------------------------------------------------------------------  244
                                                                                      
Sbjct 1111  CCGTCTGAGAAGTGAGGAGCCCCTCCGCCCAGCAGCCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCA  1184

Query  245  --------------------------------------------------------------------------  244
                                                                                      
Sbjct 1185  GCCACACCGTCTGGGAAGTGAGGAGCGTCTCTGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGTCAGCC  1258

Query  245  ---------------------------AGGAAGAAGCCATGGATTTAATAAATAGAGAAACAATGTCTGAATGG  291
                                       |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  CCCGCCAGGCCAGCCGCCCCATCCGGGAGGAAGAAGCCATGGATTTAATAAATAGAGAAACAATGTCTGAATGG  1332

Query  292  AAGCTACAAAGTGAGATACAGATAAGTCACTCTTGGGAAGAAGGCTTGAAACT---------------------  344
            |||||||||||||||||||||||||||||||||||||||||||||||||||||                     
Sbjct 1333  AAGCTACAAAGTGAGATACAGATAAGTCACTCTTGGGAAGAAGGCTTGAAACTGAATGACAATGGCTTACAGAA  1406

Query  345  --------------------------------------------------------------------------  344
                                                                                      
Sbjct 1407  ATCATCCTCTCTAAAGTGCATTGATTTAACTCCAGTATCCTCAATGGCTTCTTCCATCAAGAAGACTGGGAAGC  1480

Query  345  --------------------------------------------------------------------------  344
                                                                                      
Sbjct 1481  AGTGTTTCTCTCCATCATTACAAACTTGTGTGAGTTGCACTGGTTCGCCTTCAAGTCCTATTCCCAGTCCTATG  1554

Query  345  --------------------------------------------------------------------------  344
                                                                                      
Sbjct 1555  CAACAATACATCATAAGAAGTCAAAATCCTACCAACATTATTAGACCAAGTATCCTTGGACCATTAAAAAGAAA  1628

Query  345  -GGTGAAATGGCATTTCAATATCAACCAAAAAAGATTTTCCAAGGCACAACCAACATGCTTTCTTCTGATACTT  417
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  AGGTGAAATGGCATTTCAATATCAACCAAAAAAGATTTTCCAAGGCACAACCAACATGCTTTCTTCTGATACTT  1702

Query  418  CCCAACTGTCAGAAAATAATGTGTATCTACTTCCAGCTACTTTTGATGGAAACGACAGCAATGCTGGATCTTCT  491
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  CCCAACTGTCAGAAAATAATGTGTATCTACTTCCAGCTACTTTTGATGGAAACGACAGCAATGCTGGATCTTCT  1776

Query  492  GGTAATTCGTCAGCTGAAATCGGCACTGTCACAAACTCTCCTGTGTCACCTTCTGATACTGGTTCTCATTTGTT  565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  GGTAATTCGTCAGCTGAAATCGGCACTGTCACAAACTCTCCTGTGTCACCTTCTGATACTGGTTCTCATTTGTT  1850

Query  566  CTAGTAGACAAACTTTCAAC------------------------------------------------------  585
            ||||||||||||||||||||                                                      
Sbjct 1851  CTAGTAGACAAACTTTCAACTAAATGATTCACCCATCCCAAGACTTTCTCACCAGTGGAGAAACACACACATCA  1924

Query  586  --------------------------------------------------------------------------  585
                                                                                      
Sbjct 1925  AGCAAACCAAGTCAGAGCAATGAGAATTGTACTGTATAATTTAAACTATCTCCTATTTATCTTTTTTCCTCAAT  1998

Query  586  --------------------------------------------------------------------------  585
                                                                                      
Sbjct 1999  TTCCTAAAATTCTATTTATCTACAGAACTTGCGTGTATAATTCTTGTGTACATCCTTAAATTTAATGTAATAAC  2072

Query  586  --------------------------------------------------------------------------  585
                                                                                      
Sbjct 2073  ATGTTAAAGATGTTTTCCAAATCAGAACCATGTTGAAGATACAAGCGTAAATTGTTAGGCTGCTATTTTCTAGA  2146

Query  586  --------------------------------------------------------------------------  585
                                                                                      
Sbjct 2147  AAATGCTGTACCTTGACTTTTTAAAATAATCTTATGAAACATAATTCTGATAAAATATAATTGTTCAATTAACA  2220

Query  586  ----------------------------  585
                                        
Sbjct 2221  AAGTAAAATGATGTTTGACAATTATGTA  2248

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