Nucleotide Global Alignment

Description

Query:
ccsbBroad304_05120
Subject:
NM_001137674.3
Aligned Length:
2170
Identities:
1105
Gaps:
917

Alignment

Query    1  ------------------------------------------------ATGGCTCTTTCTCAGGGTCTAC-TGA  25
                                                            |||||||||.|||||||.| || |||
Sbjct    1  ATGTTACGTGAGGAAGCAGCTCAGAAGAGGAAAGAAAAGGAGCCAGGCATGGCTCTTCCTCAGGGAC-ACTTGA  73

Query   26  CATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATAC  99
            |.||.|||||||||||.||||||||||||..|||||||||||||||||||||||||.|.||||||.||.|||||
Sbjct   74  CTTTTAGGGATGTGGCTATAGAATTCTCTTTGGAGGAGTGGAAATGCCTGGACCCTACGCAGAGGGCTTTATAC  147

Query  100  AGAGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATATCTCTTCCAAATGCATGATGAATACATT  173
            ||.|.|.|||||.|||||||.||.|||||||||...||..||||||||||||||||||||||||||||.|..||
Sbjct  148  AGGGCCATGATGTTGGAGAACTACAGGAACCTGCATTCTGTGGATATCTCTTCCAAATGCATGATGAAGAAGTT  221

Query  174  GTCATCAACAGGGCAAGGCAATACAGAAGTGATCCACACAGGGACATTGCAGAGACAAGCAAGTTATCACATTG  247
            .||||||||||.|||||||||||||||||||   .|||||||||||||..|.|||||.|.||||.|||||||||
Sbjct  222  CTCATCAACAGCGCAAGGCAATACAGAAGTG---GACACAGGGACATTAGAAAGACATGAAAGTCATCACATTG  292

Query  248  GAGCATTTTGCTCCCAGGAAATTGAGAAAGACATTCATGACTTTGTGTTTCAGTGGCAAGAAGATGAAACAAAT  321
            |||..|||||||.||||.||||||.||||||.|||||||||||||.||||||.|||||||||||..|||.||||
Sbjct  293  GAGATTTTTGCTTCCAGAAAATTGGGAAAGATATTCATGACTTTGAGTTTCAATGGCAAGAAGACAAAAGAAAT  366

Query  322  GACCATGAAGCACCCATGACAGAAATAAAAAAGTTGACTAGTAGTACAGACCGATATGATCAAAGGCATGCTGG  395
            ..||||||||||.|.||||||.||||.||||||||||||.||||.||.|||.|||||||||.|||||||.||||
Sbjct  367  AGCCATGAAGCAACTATGACACAAATCAAAAAGTTGACTGGTAGCACCGACAGATATGATCGAAGGCATCCTGG  440

Query  396  AAACAAGCCTATTAAAGGTCAGCTTGAATCAAGATTTCATTTGCAT----------------------------  441
            ||||||||||||.||||.||||||||.||.|||.|||||||.||||                            
Sbjct  441  AAACAAGCCTATCAAAGATCAGCTTGGATTAAGCTTTCATTCGCATCTTCCTGAACTCCACATATTTCAGACCA  514

Query  442  ---------------------TTGCGAAG---------------------------------------------  449
                                 |||.||||                                             
Sbjct  515  AAGGGAAAGTTGGTAATCAAGTTGAGAAGTCTATCAACGATGCTTCCTCAGTTCTAACGTCCCAAAGAATTTCT  588

Query  450  --------------------------------------------------------------------------  449
                                                                                      
Sbjct  589  TCTAGGCCCAAAATCCATATTTCTAATAACTATGAAAATAATTTCTTCCATTCATCATTACTCACACTAAAACA  662

Query  450  --------ACATAGGAGAA-------------------------------------------------------  460
                    |||||.|||||                                                       
Sbjct  663  GGAAGTACACATAAGAGAAAAATCTTTCCAATGTAATGAGAGTGGCAAAGCCTTTAATTGTAGCTCACTCTTAA  736

Query  461  --------------------------------------------------------------------------  460
                                                                                      
Sbjct  737  GGAAACATCAGATAATCTATTTAGGAGGGAAACAATATAAATGTGATGTATGTGGCAAGGTCTTTAATCAGAAG  810

Query  461  --------------------------------------------------------------------------  460
                                                                                      
Sbjct  811  CGATACCTTGCATGCCATCATAGATGTCACACTGGTGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTT  884

Query  461  -----------------------------------TTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTG  499
                                               |||||||||||||||||||||||||||||||||||||||
Sbjct  885  TAATCAACAATCAAACCTTGCAAGTCATCATAGACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTG  958

Query  500  AGAAAGTTTTCAGTTGCAAATCACATCTTGAAATACATAGGATAATTCATACTGGAGAGAAACCATACAAATGT  573
            |.||||||||.|||.||||||||.|||||||||.||||||||.|||||||||||||||||||||||||||||||
Sbjct  959  ACAAAGTTTTTAGTCGCAAATCAAATCTTGAAAGACATAGGAGAATTCATACTGGAGAGAAACCATACAAATGT  1032

Query  574  AAGGTTTGCGACAAGGCTTTTAAGCATGATTCACACCTGGCAAAACATACTAGAATTCACAGGGGAGACAAACA  647
            ||||||||.||.||||||||.|.||.||||||||||||..||.||||.|||||||||||||..|||||.||||.
Sbjct 1033  AAGGTTTGTGAAAAGGCTTTCAGGCGTGATTCACACCTCACACAACACACTAGAATTCACACTGGAGAGAAACC  1106

Query  648  TTACACATGTAATGAATGTGGCAA----------------------------------------------GGT-  674
            |||||..||||||||.||||||||                                              ||| 
Sbjct 1107  TTACAAGTGTAATGAGTGTGGCAAAGCCTTTAGTGGGCAGTCAACACTTATTCACCATCAAGCAATCCATGGTA  1180

Query  675  ---------TTT----------TGA---TCAAAAAG---------------CAACCCTTGCATGTCAT------  705
                     |||          |||   |||.||||               |||||.|||||..||||      
Sbjct 1181  TAGGGAAACTTTATAAATGTAATGATTGTCACAAAGTCTTCAGTAATGCTACAACCATTGCAAATCATTGGAGA  1254

Query  706  ---CATA-------------------------------------------------------------------  709
               ||||                                                                   
Sbjct 1255  ATCCATAATGAAGAGAGATCTTACAAGTGTAATAAATGTGGCAAATTTTTTAGACGTCGTTCATATCTCGTAGT  1328

Query  710  --------GAAGTCATACTGGAGAGAAACCTTATAAGTGTAATGAGTGTGGCAAGACCTTTAGTCAGACATCAC  775
                    |||.|||||||||||||||||||||.||||||||||||||||||||||||||       .||||||
Sbjct 1329  TCATTGGCGAACTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTT-------CCATCAC  1395

Query  776  A-------CCTTGTGTACCA--TCATA---GACTGCATACTGGAGAGAAACCTTACAAATGTAATGAGTGTGGC  837
            |       ||||||     |  |||||   .|.|.|||||||||||||||||||||||.|||||||||||||||
Sbjct 1396  AATTCAGCCCTTGT-----AATTCATAAGGCAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGC  1464

Query  838  AAGACCTTCGCTCGAAATTCAGTCCTCGTAATTCATAAGGCAGTTCATACTGCAGAGAAACCCTATAAGTGTAA  911
            |||||||||..||..|||||||.|||.|||||||||||||||.|||||||||.|||||||||.||.||||||||
Sbjct 1465  AAGACCTTCCGTCACAATTCAGCCCTTGTAATTCATAAGGCAATTCATACTGGAGAGAAACCTTACAAGTGTAA  1538

Query  912  TGAATGTGGCAAGGTTTTTAAGCAACGAGCAACTCTTGCAGGACATCGTAGAGTTCACACTGGAGAGAAACCTT  985
            |||||||||||||||||||||.||||.||||||.||||||.|.||||.||||.||||.||||||||||||||||
Sbjct 1539  TGAATGTGGCAAGGTTTTTAATCAACAAGCAACCCTTGCACGTCATCATAGACTTCATACTGGAGAGAAACCTT  1612

Query  986  ACAGATGTGAAGAATGCGACAAAGTTTTCAGTCGCAAATCACATCTTGAAAGACATAGGAGGATTCATACTGGA  1059
            |||.||||||||||||.||||.|||||||||||||||||||||.|.|||||.|||||.|||.||||||||||||
Sbjct 1613  ACAAATGTGAAGAATGTGACACAGTTTTCAGTCGCAAATCACACCATGAAACACATAAGAGAATTCATACTGGA  1686

Query 1060  GAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCCGGAGTGATTCACGTCTTGCAGAACATCAGAGAGT  1133
            ||||||||.|||||||||.|.|.||.||||.||||.|||   |||                             
Sbjct 1687  GAGAAACCTTACAAATGTGATGATTTTGACGAGGCCTTC---AGT-----------------------------  1728

Query 1134  TCATACTGGAGAGAGACCTTACACATGTAATGAATGTGGCAAGGTTTTTAGTACAAAAGCGTACCTCGCATGTC  1207
                                                   ||||                               
Sbjct 1729  ---------------------------------------CAAG-------------------------------  1732

Query 1208  ATCAAAAACTTCATACTGGAGAGAAACTTTACGAATGTGAAGAATGTGACAAAGTTTACATTCGCAAATCACAC  1281
                    ||||||            |||     |||            ||||                     
Sbjct 1733  --------CTTCAT------------CTT-----ATG------------CAAA---------------------  1748

Query 1282  CTTGAAAGACATAGGAGGATTCATACAGGAGAGAAACCTCACAAGTGTGGTGATTGTGGTAAAGCCTTTAATTC  1355
                    |||.|||||.|||||||..||||||||||.|||||||||||.|||||||||.||||||||||.|||
Sbjct 1749  --------ACAAAGGAGAATTCATATGGGAGAGAAACATCACAAGTGTGATGATTGTGGCAAAGCCTTTACTTC  1814

Query 1356  ACCTTCACACCTTATTAGGCATCAGAGAATCCATACTGGACAGAAATCTTACAAATGTCATCAGTGTGGCAAGG  1429
            ||.||||||.|..|||||.|||||||||||||||||.||||||||||||||||||||||||.||.|||||||||
Sbjct 1815  ACATTCACATCGCATTAGACATCAGAGAATCCATACCGGACAGAAATCTTACAAATGTCATAAGCGTGGCAAGG  1888

Query 1430  TCTTTAGTCTGAGGTCACTCCTTGCAGAACATCAGAAAATTCCTTTTGGAGACAATTGTTTCAAGTGCAATGAG  1503
            ||||.|||                                                                  
Sbjct 1889  TCTTCAGT------------------------------------------------------------------  1896

Query 1504  TATAGCAAACCATCAAGCATTAAT  1527
                                    
Sbjct 1897  ------------------------  1896

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