Nucleotide Global Alignment

Description

Query:
ccsbBroad304_05120
Subject:
XR_001753716.2
Aligned Length:
3811
Identities:
1309
Gaps:
2310

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCAGACCAGGAAGCGGATCCCGTGGAGTGAAGGTCGCACCGCGGCGGATTGACTTCTAAAGACTTGGTACGTGA  74

Query    1  -------------------------------------------ATGGCTCTTTCTCAGGGTCTACTGACATTCA  31
                                                       |||||||||..||||||||||||||||||||
Sbjct   75  GGAAAAAACACGGAAGAGGAAGAGGAAAGCAAAGGAGTCAGGGATGGCTCTTCTTCAGGGTCTACTGACATTCA  148

Query   32  GGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACAGAGAC  105
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACAGAGAC  222

Query  106  GTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATATCTCTTCCAAATGCATGATGAATACATTGTCATC  179
            ||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||.|..||.|||||
Sbjct  223  GTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATACCTCTTCCAAATGCATGATGAAGATGTTCTCATC  296

Query  180  AACAGGGCAAGGCAATACAGAAGTGATCCACACAGGGACATTGCAGAGACAAGCAAGTTATCACATTGGAGCAT  253
            ||||||.||||||||||||||||||.|||||||||||||||||||.|.|||.||||||.|||||||||||| ||
Sbjct  297  AACAGGACAAGGCAATACAGAAGTGGTCCACACAGGGACATTGCAAATACATGCAAGTCATCACATTGGAG-AT  369

Query  254  -TTTGCTCCCAGGAAATTGAGAAAGACATTCATGACTTTGTGTTTCAGTGGCAAGAAGATGAAACAAATGACCA  326
             .|||||.||||||||||||||||||.||||||||||||||||||||||||||||||.||||||||||||.|||
Sbjct  370  ACTTGCTTCCAGGAAATTGAGAAAGATATTCATGACTTTGTGTTTCAGTGGCAAGAAAATGAAACAAATGGCCA  443

Query  327  TGAAGCACCCATGACAGAAATAAAAAAGTTGACTAGTAGTACAGACCGATATGATCAAAGGCATGCTGGAAACA  400
            ||||||||.|||||||.|||..||||||||||..|||||||||||.|||.||||||||||||||||||||||||
Sbjct  444  TGAAGCACTCATGACAAAAACCAAAAAGTTGATGAGTAGTACAGAGCGACATGATCAAAGGCATGCTGGAAACA  517

Query  401  AGCCTATTAAAGGTCAGCTTGAATCAAGATTTCATTTGCAT---------------------------------  441
            |.|||||||||..|.||||||.||||||.|||||||.||||                                 
Sbjct  518  AACCTATTAAAAATGAGCTTGGATCAAGCTTTCATTCGCATCTGCCTGAAGTGCACATATTTCACCCCGAAGGG  591

Query  442  ----------------TTGCGAAGAC------------------------------------------------  451
                            |||.||||.|                                                
Sbjct  592  AAAATTGGTAATCAAGTTGAGAAGGCTATCAACGATGCTTTCTCAGTTTCAGCATCCCAACGAATTTCCTGTAG  665

Query  452  --------------------------ATAGG-------------------------------------------  456
                                      |||||                                           
Sbjct  666  GCCAAAAACTCGTATTTCTAATAAGTATAGGAATAATTTCCTCCAGTCTTCATTACTCACACAAAAACGGGAAG  739

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct  740  TACACACAAGAGAAAAATCTTTCCAACGTAATGAGAGTGGCAAAGCCTTTAATGGTAGCTCACTCTTAAAAAAA  813

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct  814  CATCAGATAATCCATTTAGGAGACAAACAGTATAAATGTGATGTATGCGGCAAGGACTTTCATCAGAAGCGATA  887

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct  888  CCTTGCATGCCATAGATGTCACACTGGTGAGAATCCTTACACGTGTAATGAGTGTGGCAAGACATTCAGTCACA  961

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct  962  ATTCAGCCCTGTTAGTTCACAAGGCAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTT  1035

Query  457  ---------------------------------AGAATTCATACTGGAGAGAAACCTTACAAATGTGAAGAATG  497
                                             |||.|||||||||||||||||||||||||||||||||||||
Sbjct 1036  TTTAATCAACAATCAAACCTTGCACGTCATCATAGAGTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATG  1109

Query  498  TGAGAAAGTTTTCAGTTGCAAATCACATCTTGAAATACATAGGATAATTCATACTGGAGAGAAACCATACAAAT  571
            |||.||||||||||||.||||||||||.|||||||.||||||||.||||||.||||||||||||||||||||||
Sbjct 1110  TGACAAAGTTTTCAGTCGCAAATCACACCTTGAAAGACATAGGAGAATTCACACTGGAGAGAAACCATACAAAT  1183

Query  572  GTAAGGTTTGCGACAAGGCTTTTAAGCATGATTCACACCTGGCAAAACATACTAGAATTCACAGGGGAGACAAA  645
            ||||||||||.|||||||||||.|..|.||||||||||||||||.||||||||..||||||||..|||||.|||
Sbjct 1184  GTAAGGTTTGTGACAAGGCTTTCAGACGTGATTCACACCTGGCACAACATACTGTAATTCACACTGGAGAGAAA  1257

Query  646  CATTACACATGTAATGAATGTGGCAAGGTTTTTGATCAAAAAGCAACCCT-----TGCAT---GTCATCATAGA  711
            |.|||||..||||||||.|||||||||...||||.||||||..||.|.||     |||||   |||||      
Sbjct 1258  CCTTACAAGTGTAATGAGTGTGGCAAGACCTTTGTTCAAAATTCATCTCTTGTAATGCATAAGGTCAT------  1325

Query  712  AGTCATACTGGAGAGAAACCTTATAAGTGTAATGAGTGTGGCAAGACCTTTAGTCAGACATCACACCTTG--TG  783
              |||||||||||||||||.|||.|||||||||||.|||||||||...||||.|||.|.||||.||||||  ||
Sbjct 1326  --TCATACTGGAGAGAAACGTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCACAAATCAAACCTTGCATG  1397

Query  784  TACCATCATAGACTGCATACTGGAGAGAAACCTTACAAATGTAATGAGTGTGGCAAGACCTTCGCTCGAAATTC  857
            |  ||||.||||||.|||||||||||||||||||||||.||||||||.|||||||||...||...||||||.||
Sbjct 1398  T--CATCGTAGACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCGAAAATC  1469

Query  858  AGTCCT----CGTAATTCATAAGGCAGTTCATACTGCAGAGAAACCCTATAAGTGTAATGAATGTGGCAAGGTT  927
            |..|||    |||.| |||||   .|.|||||||||.|.|||||.|.||.|||||||   ||| |.||||||||
Sbjct 1470  AAACCTTGAACGTCA-TCATA---GACTTCATACTGGAAAGAAATCTTAGAAGTGTA---AAT-TTGCAAGGTT  1535

Query  928  TTTAAGCAACGAG-CAACTCTTGCAGGACATCGTAGAGTTCACACTGGAGAGAAACCTTACAGATGTGAAGAAT  1000
            ||||.||||| || |||..||||||.|.||||.||||.||.|.|||||||||||||||||||.|||||||||||
Sbjct 1536  TTTAGGCAAC-AGTCAAACCTTGCATGTCATCATAGACTTTATACTGGAGAGAAACCTTACAAATGTGAAGAAT  1608

Query 1001  GCGAC-AAAGTTTTCAGTCGCAAATCACATCTTGAAAGACATAGGAGGATTCATACTGGAGAGAAACCATACAA  1073
            |.||| ||||||||||.|..||||||||..|||||||.|||||||||..|||||||||||||||||||||||||
Sbjct 1609  GTGACAAAAGTTTTCAATTTCAAATCACTCCTTGAAATACATAGGAGAGTTCATACTGGAGAGAAACCATACAA  1682

Query 1074  ATGTAAGGTTTGTGACAAGGCTTTCCGGAGTGATTCACGTCTTGCAGAACAT-CAGAGAGTTCATACTGGAGAG  1146
            ||||||||||||||||||||.||||.||.|||||||||..||.||..||||| |.| ||.||||.||||||.||
Sbjct 1683  ATGTAAGGTTTGTGACAAGGATTTCGGGTGTGATTCACACCTGGCCCAACATACTG-GAATTCACACTGGAAAG  1755

Query 1147  ---------------------------AGA-CCTT-------------ACAC----------------------  1157
                                       ||| ||||             ||||                      
Sbjct 1756  GAACTGTACAAGTGTAATGAGTGTGGCAGAGCCTTTGGTGGTCAGTCAACACTTACTCACCATCAAGCAATCCA  1829

Query 1158  ---------------------ATGTAATGAATGTGGCAAGGTTTTTAGTA---------------CAA------  1189
                                 |||||||||.|||..|||.||.||.||||               |||      
Sbjct 1830  TGGTATAGGGAAACTTGACTAATGTAATGATTGTCACAAAGTCTTCAGTAATATTACAGCCATTGCAAAACATT  1903

Query 1190  ----------------------------AAGCGT-----ACCTCGCATGT--------CATCA---AAAACT--  1217
                                        |||.||     |..|.|||.||        |||||   |.||||  
Sbjct 1904  GGAGAATCCATAATGAAGGAGGTCTTACAAGTGTAATAAATGTGGCAAGTTTTTCAGACATCATTCATAACTTG  1977

Query 1218  ----------------TCATACTGGAGAGAAACTTTACGAATGTGAAGAATGTGACAAAGTTTACATTCGCAAA  1275
                            |.||||.|||||||||..||||.|||||||.||.||||.|||.||.|.||.||   ||
Sbjct 1978  CAGTTCATTGGCGATCTTATACAGGAGAGAAATCTTACAAATGTGATGATTGTGGCAAGGTCTTCAGTC---AA  2048

Query 1276  ---TCACACCTTGAAAGACATAGGAGGATTCATACAGGAGAGAAACCTCACAAGTGTGGTGATTGTG-GTAAAG  1345
               |||....|||.||.||  .||||.|||||||||||||||||||||||||||||||.|||||||| |.||||
Sbjct 2049  GCTTCATCTTTTGCAAAAC--GGGAGAATTCATACAGGAGAGAAACCTCACAAGTGTGATGATTGTGAGCAAAG  2120

Query 1346  CCTTTAATTCACCTTCACACCTTATTAGGCATCAGAGAATCCATACTGGACAGAAATCTTACAAATGTCATCAG  1419
            ||||||.|||||.||||||||..|||||..|||||||.|||||||||||||||||||||||||||.|||.|..|
Sbjct 2121  CCTTTACTTCACGTTCACACCACATTAGATATCAGAGGATCCATACTGGACAGAAATCTTACAAACGTCCTATG  2194

Query 1420  TGTGGCAAGGTCTTTAGTCTGAGGTCACTCCTTGCAGAACATCAGAAAATTCCTTTTGGAGACAATTGTTTCAA  1493
            ||||||||||||||.||||.|||||.|||||||||||||.||||.||..|||.||||.|||..|||.|||.|||
Sbjct 2195  TGTGGCAAGGTCTTCAGTCCGAGGTTACTCCTTGCAGAATATCATAACGTTCATTTTTGAGGTAATAGTTACAA  2268

Query 1494  GTGCAATGAGTATAGCAAACCATCAAGCATT------------AAT----------------------------  1527
            .|||..||||.|.||||||||||||||.|||            |||                            
Sbjct 2269  ATGCGGTGAGCACAGCAAACCATCAAGGATTGACAGTAGAGTCAATTCAGAATTGACTTGAGTTTGAGTTGACT  2342

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 2343  TAAAACATTCAGTTGAAGCATTAATTGACATTAAAGTGTTTATGTTAAGAGGATTGGGCCAGGCGTGTGGCTCA  2416

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 2417  CGCCTGTAAATCCAGCACTTTAGGAGCCCAAGGTGGATAGATCACTTGAGGTCATGAGTTTGAGATCAGCCTGG  2490

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 2491  CCAACAGACGATTGATTTCCAAAGACTCATGCTATGTAAGGAAGCCACCAAGAAGGGCAAAGAAAAGGAGCCAG  2564

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 2565  GGACGGCTCTTCCTCAGGGACACTAGACTTTCAGGGATGTGGCTATAGATTTCTCTTTGGAGGAGTGGAAATGC  2638

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 2639  CTGAACCCTGCACAGAGGGCTTTATACAGGGAAGTGATGTTGGAGAACTACAGGAACCTGGAGTTTGTGGGCTT  2712

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 2713  GAGTGCAAGCCACGATCTCGCCTCACCACAACCTCCGTCTCCCGAGTTCAAGCGATTCTCCTGCCTCAGCTTCC  2786

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 2787  CGAGTAGCTGGGATTACAGGTATGAACCACTATGCCCGGCTAACTTTGTTTTTTTTTTTTAGAAATTAAACCTT  2860

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 2861  TTTTCAGCTTAATGACCCAGGGGTGTATTTTTGAAGGACTTGGGAGCTCTCTTTGAAAGGCAAACAACAAGGGA  2934

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 2935  AACAGTACCTTTATCTCAGTAGGAAATTAAATAATTCAAACATCAAATAACTTCAATTTAAGGCTATGGACTTT  3008

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3009  GAGATAATTCTGAGCCTTGAGAGGAATGTGGTCAGGCAACCTGAGTCCAGTGGAATGCAGGTGCAACTTCTAAG  3082

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3083  AGTTTTCCTGTAAGTAATTAAGAAGACTAAGTAGCCCCAGAGATAAGACCTCCTCGGATCATTGTCCCTTCTTA  3156

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3157  TGTAGTGATAAAGTAACCTTCCTTGAAGTGTATCTATCCGTAATCAATCAAGTTGCTGCAGCCTATGCACTGGC  3230

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3231  CCAGAATAAAAAACGTGGTGATTCTGCTAAAGCTTCTCTGTCTTTCCCTGTGTGTGAAATCTTAACGTCTCTAC  3304

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3305  TTGGGAACGCTGATCCCATTCATTTAGAGTTGATGTTTCCACGTGGCTATTTCCAAGCTTTGCCTTCAAATAAA  3378

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3379  TTCTGTACTTAATCATATATTCTAAATTTTATTATTTACTGCTGACATCAGTTTCTGTCGGATTGTAGGAGCCT  3452

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3453  CACCAGAGAGGGCCCCTGTCGCCATGTTGTAAAACTCACACTTGCCAAAAGTTGTGGGTTAGGGTTTCTCCCCC  3526

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3527  TCCCTCAGGATGACGCTAGTTAGCTGACACAGATGGTCACCTCCATTACCAAGTAGAGTCAGGATGAACTATGT  3600

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3601  GTGACTGTTCAACTATGTGTCCTCTTCCCTGAGGACTGATTAGTGTTTATCTTGAAAACATGTCCTTAATGGGT  3674

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3675  TGTATAGAACACTGAAGCATCTGATTTCAAACTCTTAGCTCTTTTCCTCTATTTCCCATCACATTCTGGTCTAA  3748

Query 1528  -------------------------------------  1527
                                                 
Sbjct 3749  GGCTTATTTATTAATAAAATGATTTTTATTTCTTTAT  3785

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