Nucleotide Global Alignment

Description

Query:
ccsbBroad304_05120
Subject:
XR_002958277.1
Aligned Length:
2490
Identities:
1527
Gaps:
963

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TAGACCCGGAAGCGGATGGCAGGGACTGAAGGTCACACCACAGCGCAGTCTCACTCTGTCCTTCAGGCTGTGAG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGCAGTCTCCTGATCTTGGCTCACTGCAACCTCTGTCTCCTGGGTTCAAGTGATTCTTGTGCCTCAGCCTACCA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AGTAGCTGAGATACAGGATTGACTTCTAAAGACTCTTGGTACCTGAGGAAGAAACCCAGAAGAGGAAGAGGAAA  222

Query    1  ---------------ATGGCTCTTTCTCAGGGTCTACTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGA  59
                           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GCAAAGGAGTCGGGGATGGCTCTTTCTCAGGGTCTACTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGA  296

Query   60  GGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACAGAGACGTGATGCTGGAGAATTATAGGAACCTGG  133
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACAGAGACGTGATGCTGGAGAATTATAGGAACCTGG  370

Query  134  TCTCCCTGGATATCTCTTCCAAATGCATGATGAATACATTGTCATCAACAGGGCAAGGCAATACAGAAGTGATC  207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TCTCCCTGGATATCTCTTCCAAATGCATGATGAATACATTGTCATCAACAGGGCAAGGCAATACAGAAGTGATC  444

Query  208  CACACAGGGACATTGCAGAGACAAGCAAGTTATCACATTGGAGCATTTTGCTCCCAGGAAATTGAGAAAGACAT  281
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CACACAGGGACATTGCAGAGACAAGCAAGTTATCACATTGGAGCATTTTGCTCCCAGGAAATTGAGAAAGACAT  518

Query  282  TCATGACTTTGTGTTTCAGTGGCAAGAAGATGAAACAAATGACCATGAAGCACCCATGACAGAAATAAAAAAGT  355
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TCATGACTTTGTGTTTCAGTGGCAAGAAGATGAAACAAATGACCATGAAGCACCCATGACAGAAATAAAAAAGT  592

Query  356  TGACTAGTAGTACAGACCGATATGATCAAAGGCATGCTGGAAACAAGCCTATTAAAGGTCAGCTTGAATCAAGA  429
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TGACTAGTAGTACAGACCGATATGATCAAAGGCATGCTGGAAACAAGCCTATTAAAGGTCAGCTTGAATCAAGA  666

Query  430  TTTCATTTGCATTTGCGAAGACATAGGAGAATTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGAGAA  503
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TTTCATTTGCATTTGCGAAGACATAGGAGAATTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGAGAA  740

Query  504  AGTTTTCAGTTGCAAATCACATCTTGAAATACATAGGATAATTCATACTGGAGAGAAACCATACAAATGTAAGG  577
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  AGTTTTCAGTTGCAAATCACATCTTGAAATACATAGGATAATTCATACTGGAGAGAAACCATACAAATGTAAGG  814

Query  578  TTTGCGACAAGGCTTTTAAGCATGATTCACACCTGGCAAAACATACTAGAATTCACAGGGGAGACAAACATTAC  651
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TTTGCGACAAGGCTTTTAAGCATGATTCACACCTGGCAAAACATACTAGAATTCACAGGGGAGACAAACATTAC  888

Query  652  ACATGTAATGAATGTGGCAAGGTTTTTGATCAAAAAGCAACCCTTGCATGTCATCATAGAAGTCATACTGGAGA  725
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  ACATGTAATGAATGTGGCAAGGTTTTTGATCAAAAAGCAACCCTTGCATGTCATCATAGAAGTCATACTGGAGA  962

Query  726  GAAACCTTATAAGTGTAATGAGTGTGGCAAGACCTTTAGTCAGACATCACACCTTGTGTACCATCATAGACTGC  799
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GAAACCTTATAAGTGTAATGAGTGTGGCAAGACCTTTAGTCAGACATCACACCTTGTGTACCATCATAGACTGC  1036

Query  800  ATACTGGAGAGAAACCTTACAAATGTAATGAGTGTGGCAAGACCTTCGCTCGAAATTCAGTCCTCGTAATTCAT  873
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  ATACTGGAGAGAAACCTTACAAATGTAATGAGTGTGGCAAGACCTTCGCTCGAAATTCAGTCCTCGTAATTCAT  1110

Query  874  AAGGCAGTTCATACTGCAGAGAAACCCTATAAGTGTAATGAATGTGGCAAGGTTTTTAAGCAACGAGCAACTCT  947
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  AAGGCAGTTCATACTGCAGAGAAACCCTATAAGTGTAATGAATGTGGCAAGGTTTTTAAGCAACGAGCAACTCT  1184

Query  948  TGCAGGACATCGTAGAGTTCACACTGGAGAGAAACCTTACAGATGTGAAGAATGCGACAAAGTTTTCAGTCGCA  1021
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TGCAGGACATCGTAGAGTTCACACTGGAGAGAAACCTTACAGATGTGAAGAATGCGACAAAGTTTTCAGTCGCA  1258

Query 1022  AATCACATCTTGAAAGACATAGGAGGATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCT  1095
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  AATCACATCTTGAAAGACATAGGAGGATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCT  1332

Query 1096  TTCCGGAGTGATTCACGTCTTGCAGAACATCAGAGAGTTCATACTGGAGAGAGACCTTACACATGTAATGAATG  1169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  TTCCGGAGTGATTCACGTCTTGCAGAACATCAGAGAGTTCATACTGGAGAGAGACCTTACACATGTAATGAATG  1406

Query 1170  TGGCAAGGTTTTTAGTACAAAAGCGTACCTCGCATGTCATCAAAAACTTCATACTGGAGAGAAACTTTACGAAT  1243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  TGGCAAGGTTTTTAGTACAAAAGCGTACCTCGCATGTCATCAAAAACTTCATACTGGAGAGAAACTTTACGAAT  1480

Query 1244  GTGAAGAATGTGACAAAGTTTACATTCGCAAATCACACCTTGAAAGACATAGGAGGATTCATACAGGAGAGAAA  1317
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  GTGAAGAATGTGACAAAGTTTACATTCGCAAATCACACCTTGAAAGACATAGGAGGATTCATACAGGAGAGAAA  1554

Query 1318  CCTCACAAGTGTGGTGATTGTGGTAAAGCCTTTAATTCACCTTCACACCTTATTAGGCATCAGAGAATCCATAC  1391
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  CCTCACAAGTGTGGTGATTGTGGTAAAGCCTTTAATTCACCTTCACACCTTATTAGGCATCAGAGAATCCATAC  1628

Query 1392  TGGACAGAAATCTTACAAATGTCATCAGTGTGGCAAGGTCTTTAGTCTGAGGTCACTCCTTGCAGAACATCAGA  1465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  TGGACAGAAATCTTACAAATGTCATCAGTGTGGCAAGGTCTTTAGTCTGAGGTCACTCCTTGCAGAACATCAGA  1702

Query 1466  AAATTCCTTTTGGAGACAATTGTTTCAAGTGCAATGAGTATAGCAAACCATCAAGCATTAAT------------  1527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
Sbjct 1703  AAATTCCTTTTGGAGACAATTGTTTCAAGTGCAATGAGTATAGCAAACCATCAAGCATTAATTGACATCAGAGT  1776

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 1777  CAAATCAGCATTGACCTGAGTTTGAGTTGACTTAACATTGATTTCAAGCATTAATCGACATTAAACTGTTTATG  1850

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 1851  TTAAGAGGATTGGGCCAGGCGTGGTGTCTCACACCTGTAATCCCAGCACTTTGAGAGGCCAAGACAGATGGAAT  1924

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 1925  CTTGCTCTGTCGCCCACGTTGGAGTGCAGTGATGTGATCTCGGTTCACTGCAACATTCACCTCCCAGGTTCATG  1998

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 1999  CAATTCTCCTGCCTCAGTCTCCTGAGTAGCTGGGACTACAGGATTGATTTCCAGAGACTTATGTTACTTGAGGA  2072

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 2073  AGACACCAAGAAGGCAAAGAAAAGGAGCCAGGGATGGCTCTTCCTCAGGGATACTTGACTTTCAGAGATGTGGC  2146

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 2147  TATAGAGTTCTCTTTGCTGGAGTGGAAACGCCTGGACCCTGCACAGAACGCTTTATACAGGGCTGTGATGTGGG  2220

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 2221  AGAACTACAGGAACCTGGAGTCTGTGGGTGAGGAAAATGTTCCTCCAGACATGAAGAATCTGTCCTTGTGTATC  2294

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 2295  TTGGCTTTTCCTGGTTTTGTATTCTCTTTTGTGATTTTGCCCCATACGTGCTTTTGATGTACACAGCTGGGATT  2368

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 2369  CCAGGCACGTGCCACCATGCCCAGCATGTTATTTTGTATCTTTAGTGGAGATAGGGTTTTGCCATGTTGGCCAG  2442

Query 1528  ------------------------------------------------  1527
                                                            
Sbjct 2443  GCTCGTCTCGAACTCCTGACCTCCATACCCACCCGCCTCGGCCTCTAA  2490

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.