Nucleotide Global Alignment

Description

Query:
ccsbBroad304_05291
Subject:
NM_001113414.1
Aligned Length:
1761
Identities:
1559
Gaps:
108

Alignment

Query    1  ATGTTTGGGATTCAGGAGAATATTCCGCGCGGGGGGACGACCATGAAGGAGGAGCCGCTGGGCAGCGGCATGAA  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGTTTGGGATTCAGGAGAATATTCCGCGCGGGGGGACGACCATGAAGGAGGAGCCGCTGGGCAGCGGCATGAA  74

Query   75  CCCGGTGCGCTCGTGGATGCACACGGCGGGCGTGGTGGACGCCAACACGGCCGCCCAGAGCGGCGTGGGGCTGG  148
            |||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CCCGGTGCGCTCGTGGATGCACACGGCAGGCGTGGTGGACGCCAACACGGCCGCCCAGAGCGGCGTGGGGCTGG  148

Query  149  CGCGGGCGCACTTCGAGAAGCAGCCGCCTTCCAACCTCCGGAAATCCAATTTCTTCCACTTCGTGCTGGCGCTC  222
            |||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  CGCGGGCGCACTTCGAGAAGCAGCCTCCTTCCAACCTCCGGAAATCCAATTTCTTCCACTTCGTGCTGGCGCTC  222

Query  223  TACGATAGGCAGGGGCAGCCGGTGGAGATTGAAAGGACCGCTTTTGTGGACTTTGTGGAGAAAGAGAAAGAGCC  296
            |||||.|||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TACGACAGGCAGGGGCAGCCGGTGGAGATCGAAAGGACCGCTTTTGTGGACTTTGTGGAGAAAGAGAAAGAGCC  296

Query  297  AAACAACGAGAAAACCAACAACGGCATCCACTATAAACTCCAGTTATTGTACAGCAACGGAGTCAGAACAGAGC  370
            .||||||||||||||||||||||||||.|||||.||.||.|||.||.||||||||||.||.|||||||||||||
Sbjct  297  GAACAACGAGAAAACCAACAACGGCATTCACTACAAGCTGCAGCTACTGTACAGCAATGGCGTCAGAACAGAGC  370

Query  371  AAGATCTGTATGTTCGCCTCATAGATTCAATGACCAAACAGGCCATCGTCTACGAGGGCCAGGACAAGAACCCG  444
            |||||||||||||.|||||||||||||||||||||||||||||||||||.||.||.||||||||||||||.|||
Sbjct  371  AAGATCTGTATGTCCGCCTCATAGATTCAATGACCAAACAGGCCATCGTGTATGAAGGCCAGGACAAGAATCCG  444

Query  445  GAGATGTGCCGTGTGCTGCTGACCCACGAGATCATGTGCAGCCGGTGCTGTGACAAGAAAAGTTGTGGCAATAG  518
            |||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||
Sbjct  445  GAGATGTGCCGCGTGCTGCTGACCCACGAGATCATGTGCAGCCGGTGCTGTGACAAGAAGAGTTGTGGCAATAG  518

Query  519  AAACGAAACGCCCTCAGACCCTGTAATCATTGACAGATTCTTTCTAAAGTTTTTCCTCAAGTGCAATCAGAACT  592
            ||||||.||.|||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||
Sbjct  519  AAACGAGACACCCTCAGACCCTGTAATCATTGACAGATTCTTTCTAAAGTTCTTCCTCAAGTGCAATCAGAACT  592

Query  593  GTTTGAAGAATGCAGGCAACCCTCGAGATATGCGGAGATTCCAGGTTGTTGTATCGACAACAGTCAACGTGGAC  666
            |..||||||||||.|||||||||||.||.||||||||.||||||||.|||||||||||||||||||||||||||
Sbjct  593  GCCTGAAGAATGCGGGCAACCCTCGGGACATGCGGAGGTTCCAGGTCGTTGTATCGACAACAGTCAACGTGGAC  666

Query  667  GGCCACGTGCTGGCCGTGTCAGACAACATGTTTGTGCACAACAATTCCAAACACGGGAGGCGGGCCCGCCGCCT  740
            ||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GGCCACGTGCTGGCCGTGTCTGACAACATGTTTGTGCACAACAATTCCAAACACGGGAGGCGGGCCCGCCGCCT  740

Query  741  AGACCCGTCAGAAGCCACTCCGTGCATCAAGGCCATCAGTCCCAGTGAAGGCTGGACCACGGGGGGTGCCACCG  814
            ||||||||||||||||||||||||.||||||||.|||||.||||||||||||||||||||||||||||||||.|
Sbjct  741  AGACCCGTCAGAAGCCACTCCGTGTATCAAGGCTATCAGCCCCAGTGAAGGCTGGACCACGGGGGGTGCCACTG  814

Query  815  TCATCATAATTGGCGACAACTTCTTTGACGGGCTGCAAGTTGTATTCGGAACTATGTTGGTGTGGAGCGAGCTG  888
            |.||||||||.||.|||||||||||||||||.||.||||||||.|||||||||||||||||||||||.||||||
Sbjct  815  TGATCATAATCGGGGACAACTTCTTTGACGGTCTACAAGTTGTGTTCGGAACTATGTTGGTGTGGAGTGAGCTG  888

Query  889  ATAACTCCCCATGCCATCCGAGTCCAGACCCCGCCGAGGCACATTCCTGGCGTCGTCGAAGTGACCCTCTCCTA  962
            |||||.|||||.|||||||||||.|||||.|||||..|.|||||.|||||.||.||.|||||||||||||||||
Sbjct  889  ATAACCCCCCACGCCATCCGAGTGCAGACGCCGCCTCGACACATCCCTGGAGTTGTTGAAGTGACCCTCTCCTA  962

Query  963  CAAATCCAAGCAGTTCTGCAAAGGTGCTCCTGGGCGCTTTGTCTACACCGCCCTTAATGAACCAACCATAGATT  1036
            |||.||.|||||||||||||||||.||||||||.||||||||||||||.|||||||||||.|||||||||||||
Sbjct  963  CAAGTCTAAGCAGTTCTGCAAAGGCGCTCCTGGACGCTTTGTCTACACTGCCCTTAATGAGCCAACCATAGATT  1036

Query 1037  ACGGCTTTCAGAGGTTGCAGAAAGTGATCCCAAGACATCCGGGTGATCCCGAAAGGTTACCCAAGGAGGTGTTA  1110
            |||||||.||||||||||||||||||||.||.||||||||.|||||.||||||||||||||||||||.||||||
Sbjct 1037  ACGGCTTCCAGAGGTTGCAGAAAGTGATACCCAGACATCCAGGTGACCCCGAAAGGTTACCCAAGGAAGTGTTA  1110

Query 1111  CTGAAGCGGGCGGCGGACCTGGTGGAAGCCTTATACGGAATGCCTCACAACAACCAGGAGATCATCTTGAAGCG  1184
            ||||||.||||.||.|||||.|||||||||||.||.||.|||||||||||.|||||||||||||||.|||||.|
Sbjct 1111  CTGAAGAGGGCAGCAGACCTTGTGGAAGCCTTGTATGGGATGCCTCACAATAACCAGGAGATCATCCTGAAGAG  1184

Query 1185  AGCGGCGGACATCGCCGAGGCGCTGTACAGCGTTCCCCGCAATCACAACCAGATCCCCACCCTGGGCAACAACC  1258
            ||||||.|||||.||.||||||.||||||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 1185  AGCGGCCGACATTGCTGAGGCGTTGTACAGCGTTCCCCGCAATCACAACCAGATCCCCACCCTGGGCAACACCC  1258

Query 1259  CTGCACACACGGGCATGATGGGCGTCAACTCCTTCAGCAGCCAGCTAGCCGTCAACGTGTCAGAGACGTCACAA  1332
            |.||||||||.|||||||||||.||.||||||||||||||||||||||||||.||.|||||||||||.||||||
Sbjct 1259  CAGCACACACTGGCATGATGGGTGTGAACTCCTTCAGCAGCCAGCTAGCCGTTAATGTGTCAGAGACCTCACAA  1332

Query 1333  GCCAACGACCAAGTCGGCTACAGTCGCAATACAAGCAGCGTGTCCCCGCGAGGCTACGTCCCCAGCAGTACTCC  1406
            |||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  GCCAATGACCAAGTCGGCTACAGTCGCAATACAAGCAGCGTGTCCCCGCGAGGCTACGTCCCCAGCAGTACTCC  1406

Query 1407  CCAGCAGTCCAATTACAACACAGTCAGCACTAGCATGAATGGATATGGAAGTGGCGCCATGGCCAGTCTAGGGG  1480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct 1407  CCAGCAGTCCAATTACAACACAGTCAGCACTAGCATGAATGGATATGGAAGTGGCGCCATGGCCAATCTAGGGG  1480

Query 1481  TCCCTGGCTCGCCTGGATTTCTTAATGGCTCCTCCGCTAACTCTCCCTACGGCA--------------------  1534
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||                    
Sbjct 1481  TCCCTGGCTCGCCTGGATTTCTTAATGGCTCCTCCGCTAACTCTCCCTACGGCATAGTGCCGTCCAGCCCCACC  1554

Query 1535  --------------------------------------------------------------------------  1534
                                                                                      
Sbjct 1555  ATGGCAGCCTCTTCGGTCACCCTCCCTTCAAACTGTAGCAGCACACACGGCATTTTCTCATTCTCACCTGCCAA  1628

Query 1535  --------------TGAAACAGAAGAGCGCCTTCGCGCCCGTGGTCCGGCCCCAAGCCTCTCCTCCTCCTTCCT  1594
                          ||||||||||||||||.||.||||||||||||||||||||||||||.|||||||||||||
Sbjct 1629  TGTCATCTCCGCAGTGAAACAGAAGAGCGCTTTTGCGCCCGTGGTCCGGCCCCAAGCCTCGCCTCCTCCTTCCT  1702

Query 1595  GCACCAGCGCCAACGGGAATGGACTGCAAGCTATGTCTGGGCTGGTAGTCCCGCCAATG  1653
            |||||||||||||||||||.|||||||||||||||||||||||||||||||||||.|||
Sbjct 1703  GCACCAGCGCCAACGGGAACGGACTGCAAGCTATGTCTGGGCTGGTAGTCCCGCCCATG  1761

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