Nucleotide Global Alignment

Description

Query:
ccsbBroad304_05291
Subject:
NM_001364159.1
Aligned Length:
1780
Identities:
973
Gaps:
533

Alignment

Query    1  ATGTTTGGGATTCAGGAGAATATTCCGCGCGGGGGGACGACCATGAAGGAGGAGCCGCTGGGCAGCGGCATGAA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CCCGGTGCGCTCGTGGATGCACACGGCGGGCGTGGTGGACGCCAACACGGCCGCCCAGAGCGGCGTGGGGCTGG  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  CGCGGGCGCACTTCGAGAAGCAGCCGCCTTCCAACCTCCGGAAATCCAATTTCTTCCACTTCGTGCTGGCGCTC  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  TACGATAGGCAGGGGCAGCCGGTGGAGATTGAAAGGACCGCTTTTGTGGACTTTGTGGAGAAAGAGAAAGAGCC  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  AAACAACGAGAAAACCAACAACGGCATCCACTATAAACTCCAGTTATTGTACAGCAACGGAGTCAGAACAGAGC  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  AAGATCTGTATGTTCGCCTCATAGATTCAATGACCAAACAGGCCATCGTCTACGAGGGCCAGGACAAGAACCCG  444
                                         |||||.|||||.|||||.||.||.||.|||||.|||||||||||.
Sbjct    1  -----------------------------ATGACAAAACAAGCCATAGTGTATGAAGGCCAAGACAAGAACCCA  45

Query  445  GAGATGTGCCGTGTGCTGCTGACCCACGAGATCATGTGCAGCCGGTGCTGTGACAAGAAAAGTTGTGGCAATAG  518
            ||.||||||||.||..||||.||.||.|||||||||||||||||.||.||||||||||||||.||||||||..|
Sbjct   46  GAAATGTGCCGAGTCTTGCTCACACATGAGATCATGTGCAGCCGCTGTTGTGACAAGAAAAGCTGTGGCAACCG  119

Query  519  AAACGAAACGCCCTCAGACCCTGTAATCATTGACAGATTCTTTCTAAAGTTTTTCCTCAAGTGCAATCAGAACT  592
            |||.||.||.||||||||.||.||.||.||||||||.|||||..|.||.|||||||||||.||.||.||.||.|
Sbjct  120  AAATGAGACTCCCTCAGATCCAGTGATAATTGACAGGTTCTTCTTGAAATTTTTCCTCAAATGTAACCAAAATT  193

Query  593  GTTTGAAGAATGCAGGCAACCCTCGAGATATGCGGAGATTCCAGGTTGTTGTATCGACAACAGTCAACGTGGAC  666
            |..|.||||||||.||.|||||.||.||.|||||||||||||||||.||.||.||.||.||||||||.|||||.
Sbjct  194  GCCTAAAGAATGCGGGAAACCCACGTGACATGCGGAGATTCCAGGTCGTGGTGTCTACGACAGTCAATGTGGAT  267

Query  667  GGCCACGTGCTGGCCGTGTCAGACAACATGTTTGTGCACAACAATTCCAAACACGGGAGGCGGGCCCGCCGCCT  740
            |||||.||.|||||.||.||.||.|||||||||||.||.||.||||||||.||.|||.||.||||.||..|.||
Sbjct  268  GGCCATGTCCTGGCAGTCTCTGATAACATGTTTGTCCATAATAATTCCAAGCATGGGCGGAGGGCTCGGAGGCT  341

Query  741  AGACCCGTCAGAA------------------------GCCACTCCGTGCATCAAGGCCATCAGTCCCAGTGAAG  790
            .|||||.||.|||                        ||.|||||.||.|||||.||||||||.||.|||||||
Sbjct  342  TGACCCCTCGGAAGGTACGCCCTCTTATCTGGAACATGCTACTCCCTGTATCAAAGCCATCAGCCCGAGTGAAG  415

Query  791  GCTGGACCACGGGGGGTGCCACCGTCATCATAATTGGCGACAACTTCTTTGACGGGCTGCAAGTTGTATTCGGA  864
            |.|||||.|||||.|||||.||.||.|||||.||.||.|||||.||||||||.|||.|.||.||..|||||||.
Sbjct  416  GATGGACGACGGGAGGTGCGACTGTGATCATCATAGGGGACAATTTCTTTGATGGGTTACAGGTCATATTCGGT  489

Query  865  ACTATGTTGGTGTGGAGCGAGCTGATAACTCCCCATGCCATCCGAGTCCAGACCCCGCCGAGGCACATTCCTGG  938
            ||.|||.||||.|||||.|||.||||.|||||.|||||||||||.||.||||||||.||..|||||||.|||||
Sbjct  490  ACCATGCTGGTCTGGAGTGAGTTGATCACTCCTCATGCCATCCGTGTGCAGACCCCTCCTCGGCACATCCCTGG  563

Query  939  CGTCGTCGAAGTGACCCTCTCCTACAAATCCAAGCAGTTCTGCAAAGGTGCTCCTGGGCGCTTTGTCTACACCG  1012
            .||.||.|||||.||.||.|||||||||||.|||||||||||||||||..|.||.||..|.||..|.||.||.|
Sbjct  564  TGTTGTGGAAGTCACACTGTCCTACAAATCTAAGCAGTTCTGCAAAGGAACACCAGGCAGATTCATTTATACAG  637

Query 1013  CCCTTAATGAACCAACCATAGATTACGGCTTTCAGAGGTTGCAGAAAGTGATCCCAAGACATCCGGGTGATCCC  1086
            |.||.||.|||||.|||||.|||||.||.||.||||||||.|||||.||.||.||..|.||.||.|||||.||.
Sbjct  638  CGCTCAACGAACCCACCATCGATTATGGTTTCCAGAGGTTACAGAAGGTCATTCCTCGGCACCCTGGTGACCCT  711

Query 1087  GAAAGGTTACCCAAGGAGGTGTTACTGAAGCGGGCGGCGGACCTGGTGGAAGCCTTATACGGAATGCCTCACAA  1160
            ||..|.||.||.|||||.||..||||.||..||||.|||||.|||||.|||||..|.||.||.|||||.|||||
Sbjct  712  GAGCGTTTGCCAAAGGAAGTAATACTCAAAAGGGCTGCGGATCTGGTAGAAGCACTGTATGGGATGCCACACAA  785

Query 1161  CAACCAGGAGATCATCTTGAAGCGAGCGGCGGACATCGCCGAGGCGCTGTACAGCGTTCCCCGCAATCACAACC  1234
            |||||||||.|||||..|||||.|||||||.|||||.||||||||.||||||||.|||||||||||.|||||||
Sbjct  786  CAACCAGGAAATCATTCTGAAGAGAGCGGCCGACATTGCCGAGGCCCTGTACAGTGTTCCCCGCAACCACAACC  859

Query 1235  AGATCCCCACCCTGGGCAACAACCCTGCACACACGGGCATGATGGGCGTCAACTCCTTCAGCAGCCAGCTAGCC  1308
            |..||||..||||.|..||||.|.|.|..|||.|.||.|||||||||||.||.||.|||||..|.||.||.|||
Sbjct  860  AACTCCCGGCCCTTGCTAACACCTCGGTCCACGCAGGGATGATGGGCGTGAATTCGTTCAGTGGACAACTGGCC  933

Query 1309  GTCAACGTGTCAGAGACGTCACAAGCCAACGACCAAGTC--GGCTACAGTCGCAATACAAGCAGCGTGTCCCCG  1380
            ||.||.||.||.|||.|.|||||||||    ||||| ||  ||.|.||..|||||..||||||||||.||.||.
Sbjct  934  GTGAATGTCTCCGAGGCATCACAAGCC----ACCAA-TCAGGGTTTCACCCGCAACTCAAGCAGCGTATCACCA  1002

Query 1381  CGAGGCTACGTCCCCAGCAGTACTCCCCAGCAGTCCAATTACAACACAGTCAGCACTAGCATGAATGGATATGG  1454
            |..||.|||||.||.||||..||||||||||||.||||.||.|||.|.||||.|||.||||||||.|||||.||
Sbjct 1003  CACGGGTACGTGCCGAGCACCACTCCCCAGCAGACCAACTATAACTCCGTCACCACGAGCATGAACGGATACGG  1076

Query 1455  AAGTGGCGCCATGGCCAGTCTAG--GGGTCCC-------------TGGCTCGCCTG-----------GATTTCT  1502
            ...||.|||.|||.|||.|.|.|  ||.||||             .|||||..|||           .||..|.
Sbjct 1077  CTCTGCCGCAATGTCCAATTTGGGCGGCTCCCCCACCTTCCTCAACGGCTCAGCTGCCAACTCCCCCTATGCCA  1150

Query 1503  TA------------------ATGG-CTCCTCCGCTAA--CTCTCCCT---ACGGCA------------------  1534
            ||                  |||| |||||||.| ||  ||| ||||   ||.|||                  
Sbjct 1151  TAGTGCCATCCAGCCCCACCATGGCCTCCTCCAC-AAGCCTC-CCCTCCAACTGCAGCAGCTCCTCGGGCATCT  1222

Query 1535  ---------------------------------TGAAACAGAAGAGCGCCTTCGCGCCCGTGGTCCGGCCCCAA  1575
                                             |||||||||||||.||.|||||.||.||.|||.|.|||||.
Sbjct 1223  TCTCCTTCTCACCAGCCAACATGGTCTCAGCCGTGAAACAGAAGAGTGCTTTCGCACCAGTCGTCAGACCCCAG  1296

Query 1576  GCCTCTCCTCCTCCTTCCTGCACCAGCGCCAACGGGAATGGACTGCAAGCTATGTCTGGGCTGGTAGTCCCGCC  1649
            .||||.||.|||||..|||||||||||.||||||||||..|.||||||||.||.|||||..||.|.||.||.||
Sbjct 1297  ACCTCCCCACCTCCCACCTGCACCAGCACCAACGGGAACAGCCTGCAAGCGATATCTGGCATGATTGTTCCTCC  1370

Query 1650  AATG  1653
            .|||
Sbjct 1371  TATG  1374

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