Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_05291
- Subject:
- XR_001747076.1
- Aligned Length:
- 5076
- Identities:
- 1653
- Gaps:
- 3423
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATTCCTCGGGGAGAGAGGGCTGAGTTTTGTGCGCCTCCGTCCGCTGCGCGCGCCGCTCCAGGCCCCGCCGCGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCGCCTGCGCCCGGGACTGCGCCGCAGCACTCACTGCCCCGTTTATTTGTCTTTGGAGCAGGCGGGCCGCGCCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GAAGCGGGCGATCCCGCAGTGTCCTGCAGCCGCGGACGCCGCCTGGCTAGGATGACACCACGTTGAGCGCGCCT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCAAACAACAACAACAACAAGCGCCGCCGCGGCCACCGCGTCCTGCTCCTTCGAAGCGCCGCCGCCGCCGGTGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGCCGCCTCCGCGCCCCTGGCCGTCCGGAGCGCCCGGCCGCTGGTGTATGTCGCGCCTGCCCGGGACGGGCTGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AGCCGGCGGCGGGGCCGGACCGCAGGCGCCGAGCAGGGCGAGGGCGGCCAGGGCAGCCGCCTGCCGCCAAGCCC 444
Query 1 --------------------------------------------------------------ATGTTTGGGATT 12
||||||||||||
Sbjct 445 CGAGCGCCGCTGCTCGAGGAAACGCTTTCGGCCGGGAGCTGCGGCCGCCGCCAGCAGTTTTCATGTTTGGGATT 518
Query 13 CAGGAGAATATTCCGCGCGGGGGGACGACCATGAAGGAGGAGCCGCTGGGCAGCGGCATGAACCCGGTGCGCTC 86
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CAGGAGAATATTCCGCGCGGGGGGACGACCATGAAGGAGGAGCCGCTGGGCAGCGGCATGAACCCGGTGCGCTC 592
Query 87 GTGGATGCACACGGCGGGCGTGGTGGACGCCAACACGGCCGCCCAGAGCGGCGTGGGGCTGGCGCGGGCGCACT 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GTGGATGCACACGGCGGGCGTGGTGGACGCCAACACGGCCGCCCAGAGCGGCGTGGGGCTGGCGCGGGCGCACT 666
Query 161 TCGAGAAGCAGCCGCCTTCCAACCTCCGGAAATCCAATTTCTTCCACTTCGTGCTGGCGCTCTACGATAGGCAG 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TCGAGAAGCAGCCGCCTTCCAACCTCCGGAAATCCAATTTCTTCCACTTCGTGCTGGCGCTCTACGATAGGCAG 740
Query 235 GGGCAGCCGGTGGAGATTGAAAGGACCGCTTTTGTGGACTTTGTGGAGAAAGAGAAAGAGCCAAACAACGAGAA 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GGGCAGCCGGTGGAGATTGAAAGGACCGCTTTTGTGGACTTTGTGGAGAAAGAGAAAGAGCCAAACAACGAGAA 814
Query 309 AACCAACAACGGCATCCACTATAAACTCCAGTTATTGTACAGCAACGGAGTCAGAACAGAGCAAGATCTGTATG 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AACCAACAACGGCATCCACTATAAACTCCAGTTATTGTACAGCAACGGAGTCAGAACAGAGCAAGATCTGTATG 888
Query 383 TTCGCCTCATAGATTCAATGACCAAACAGGCCATCGTCTACGAGGGCCAGGACAAGAACCCGGAGATGTGCCGT 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TTCGCCTCATAGATTCAATGACCAAACAGGCCATCGTCTACGAGGGCCAGGACAAGAACCCGGAGATGTGCCGT 962
Query 457 GTGCTGCTGACCCACGAGATCATGTGCAGCCGGTGCTGTGACAAGAAAAGTTGTGGCAATAGAAACGAAACGCC 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GTGCTGCTGACCCACGAGATCATGTGCAGCCGGTGCTGTGACAAGAAAAGTTGTGGCAATAGAAACGAAACGCC 1036
Query 531 CTCAGACCCTGTAATCATTGACAGATTCTTTCTAAAGTTTTTCCTCAAGTGCAATCAGAACTGTTTGAAGAATG 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CTCAGACCCTGTAATCATTGACAGATTCTTTCTAAAGTTTTTCCTCAAGTGCAATCAGAACTGTTTGAAGAATG 1110
Query 605 CAGGCAACCCTCGAGATATGCGGAGATTCCAGGTTGTTGTATCGACAACAGTCAACGTGGACGGCCACGTGCTG 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CAGGCAACCCTCGAGATATGCGGAGATTCCAGGTTGTTGTATCGACAACAGTCAACGTGGACGGCCACGTGCTG 1184
Query 679 GCCGTGTCAGACAACATGTTTGTGCACAACAATTCCAAACACGGGAGGCGGGCCCGCCGCCTAGACCCGTCAGA 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GCCGTGTCAGACAACATGTTTGTGCACAACAATTCCAAACACGGGAGGCGGGCCCGCCGCCTAGACCCGTCAGA 1258
Query 753 AGCCACTCCGTGCATCAAGGCCATCAGTCCCAGTGAAGGCTGGACCACGGGGGGTGCCACCGTCATCATAATTG 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AGCCACTCCGTGCATCAAGGCCATCAGTCCCAGTGAAGGCTGGACCACGGGGGGTGCCACCGTCATCATAATTG 1332
Query 827 GCGACAACTTCTTTGACGGGCTGCAAGTTGTATTCGGAACTATGTTGGTGTGGAGCGAGCTGATAACTCCCCAT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GCGACAACTTCTTTGACGGGCTGCAAGTTGTATTCGGAACTATGTTGGTGTGGAGCGAGCTGATAACTCCCCAT 1406
Query 901 GCCATCCGAGTCCAGACCCCGCCGAGGCACATTCCTGGCGTCGTCGAAGTGACCCTCTCCTACAAATCCAAGCA 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GCCATCCGAGTCCAGACCCCGCCGAGGCACATTCCTGGCGTCGTCGAAGTGACCCTCTCCTACAAATCCAAGCA 1480
Query 975 GTTCTGCAAAGGTGCTCCTGGGCGCTTTGTCTACACCGCCCTTAATGAACCAACCATAGATTACGGCTTTCAGA 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 GTTCTGCAAAGGTGCTCCTGGGCGCTTTGTCTACACCGCCCTTAATGAACCAACCATAGATTACGGCTTTCAGA 1554
Query 1049 GGTTGCAGAAAGTGATCCCAAGACATCCGGGTGATCCCGAAAGGTTACCCAAGGAGGTGTTACTGAAGCGGGCG 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GGTTGCAGAAAGTGATCCCAAGACATCCGGGTGATCCCGAAAGGTTACCCAAGGAGGTGTTACTGAAGCGGGCG 1628
Query 1123 GCGGACCTGGTGGAAGCCTTATACGGAATGCCTCACAACAACCAGGAGATCATCTTGAAGCGAGCGGCGGACAT 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 GCGGACCTGGTGGAAGCCTTATACGGAATGCCTCACAACAACCAGGAGATCATCTTGAAGCGAGCGGCGGACAT 1702
Query 1197 CGCCGAGGCGCTGTACAGCGTTCCCCGCAATCACAACCAGATCCCCACCCTGGGCAACAACCCTGCACACACGG 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 CGCCGAGGCGCTGTACAGCGTTCCCCGCAATCACAACCAGATCCCCACCCTGGGCAACAACCCTGCACACACGG 1776
Query 1271 GCATGATGGGCGTCAACTCCTTCAGCAGCCAGCTAGCCGTCAACGTGTCAGAGACGTCACAAGCCAACGACCAA 1344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 GCATGATGGGCGTCAACTCCTTCAGCAGCCAGCTAGCCGTCAACGTGTCAGAGACGTCACAAGCCAACGACCAA 1850
Query 1345 GTCGGCTACAGTCGCAATACAAGCAGCGTGTCCCCGCGAGGCTACGTCCCCAGCAGTACTCCCCAGCAGTCCAA 1418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 GTCGGCTACAGTCGCAATACAAGCAGCGTGTCCCCGCGAGGCTACGTCCCCAGCAGTACTCCCCAGCAGTCCAA 1924
Query 1419 TTACAACACAGTCAGCACTAGCATGAATGGATATGGAAGTGGCGCCATGGCCAGTCTAGGGGTCCCTGGCTCGC 1492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 TTACAACACAGTCAGCACTAGCATGAATGGATATGGAAGTGGCGCCATGGCCAGTCTAGGGGTCCCTGGCTCGC 1998
Query 1493 CTGGATTTCTTAATGGCTCCTCCGCTAACTCTCCCTACGGCATGAAACAGAAGAGCGCCTTCGCGCCCGTGGTC 1566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 CTGGATTTCTTAATGGCTCCTCCGCTAACTCTCCCTACGGCATGAAACAGAAGAGCGCCTTCGCGCCCGTGGTC 2072
Query 1567 CGGCCCCAAGCCTCTCCTCCTCCTTCCTGCACCAGCGCCAACGGGAATGGACTGC------------------- 1621
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 CGGCCCCAAGCCTCTCCTCCTCCTTCCTGCACCAGCGCCAACGGGAATGGACTGCAAGACACCACCTTTGGTAT 2146
Query 1622 -------------------------------------------------------------------------- 1621
Sbjct 2147 ATGCTCCTCCCAGTGACTCAAATCCAGTTACTCCTTTAGAAACATGAACCCATTCAACCAGTATTTACTGAGCA 2220
Query 1622 -------------------------------------------------------------------------- 1621
Sbjct 2221 CCTACTATGTACCAGGCTCTCTGCTGGGTGCTGAGGACGTAGCCGCGGAGAAGACAAACTGGCCCTTTTGTGAA 2294
Query 1622 ---------------------------------------------------AAGCTATGTCTGGGCTGGTAGTC 1644
|||||||||||||||||||||||
Sbjct 2295 GTCGGTGGCATATTTCACTTTGATGAACTAATGCTCAAAAAAGGAACTGGAAAGCTATGTCTGGGCTGGTAGTC 2368
Query 1645 CCGCCAATG----------------------------------------------------------------- 1653
|||||||||
Sbjct 2369 CCGCCAATGTGAGGGACTTCTGTTTACCTTCCGCAGCACCCAGCATCAAAGGACGGACTTCAGGGGACACGTTT 2442
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 2443 AGTATATTAAGACATGCTGATGGAAACAGTATCTTCAAAAAAATCAGCAGCAATTGAAATGCTACAAAAGACTT 2516
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 2517 TGTTTAAAGATTTTATTTAAACTATTAAGAATCAACATGCAAACAGCCTACTTCTTCATGAACAATTCCATTTT 2590
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 2591 ATTGACTGAACTTTTCTCATATTTTCACATTTCTCAGTCCTGAAGAATAAGGAAAACAAAGCGACGCCTATTTT 2664
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 2665 GTATAAAGTTTCCGACTCCGTCTTGGCCATGTCTAGTAATTGCTATGTGTTGGGAGAAACTTTGTGAATGCACC 2738
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 2739 ATTTTGATGATCATGAAACGCTGATGAAAAATGCCTCCAAACATTTTTCTGTACTCATACTTAGATTCACAATG 2812
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 2813 GTTGTGTATCTCTATAATGTGAAATATTTTTTTGTGGTGATAAAAAGAGGGCCAAGGAGGTATGAGCCATCAGA 2886
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 2887 CTGGAAAAAAGGATGACTATATGATGAGGAGAAACTGGGGTGGCAGGGAGGGAGGGAGGGTTTATCACTGCTTA 2960
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 2961 ACTTCATCTTCATGAAATGAAACTTTGTAACTTATTGTAGTTAGAAATTGTAACTTTGATATTGAATTCTCTTG 3034
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 3035 CCTTCAACAAGCACACTGACAGAGAAAAAATGCTACTGTCTGTTGGTTCCAATATTCTCCCACTGCTAGAGCTT 3108
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 3109 CCTGTTAAGCAAGTGTGATCTGCAACATTTTTTCAACTTTTGCTAGCACTGTATACTATTGCATTCTTAGGCTA 3182
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 3183 CTGTGAGGTCTATGTTTCTTGTACCAGAAATTGTCCTTTTGACTTCTAGATCCTTCTTCCCTAATGTGTTTTGT 3256
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 3257 ATGTGGTTATAAAATTGTAGACTTTTGTGATTTTGCCAAAGTTGTAGCTAAATATTTATACACTTGTCTTGAAT 3330
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 3331 TTTTTTCAGATCCACTTAAAATATTTAGAAAAACAAGTTTTATTCCTTATGTGTCTTATAAGGAATAAAATGGT 3404
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 3405 CTTCATTTGACACTTACTTTCCCATGAACACTTGCAGTTGCTAAGGGACTTTATTTTGTAACATATCAATTATA 3478
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 3479 AATATTGTATTTATCTTTGAAATTTTGTACATTGCTTTTCCCACCTTTTCCTTTTTCTTCTTTCTTGTCTGTAT 3552
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 3553 TGGTTTTTGATCACGGCCTGGTGTTGTGATACTGGGAAGAGCATTAGCCAAGAACTTGTCTCTTTGATCTGTTT 3626
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 3627 CGTTAAGCTGAACCAGTGTCTTTACATTTCATTTGTACTTCAAAAAATATGCTATTGTTTAGACTTTCCATCCT 3700
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 3701 TTTTTTTTTTATTTTGAGGAAAAGTCAAATTCATTGTTTATTTTTATATTATTTTTAAGTTATCTGAACAAATA 3774
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 3775 CTTTTGAAAAAAAAGTTTGTTGTATAGTCAAAACAAATCGGTGCCACCCGGCCGTGACAAATCCTAGTAGATTC 3848
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 3849 TGTGCATGTGGAGCGGCCGCGAAGAGGTGACACCGTTTGGGGCTGTGTCCTTATTTTATTTTATTTTTTTGTAG 3922
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 3923 AATGTAAAAAGTCATTTTAGATGCCACCCATTGACTTTGCCACATAGCTGAACTGTGTTTACTGGAAAAATTCA 3996
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 3997 GAGGCCTAAAGTTTAAAATAAAATTTACTTCTGATGTTTTAATTAAAATGTTTGCCACATTAACTTTTCTGATG 4070
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 4071 CCTTAAAAGTGAACTTCTTTAAAGAACCTTTGTGCTATTTTATCACAGGCTTACACTACAATTGTTAATAAATA 4144
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 4145 CTTCATTTGGAGATGTATGGTGTAAAACACACAAACACACACAAAAAAGCACAAGCCCGCTGCATGACCCGTCT 4218
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 4219 CTCCTTTCTGGGACTATTTCTGCTGCGTCCTGCACCCTCCTGGGCCCACCTCCGATTCACAGAGGTTTCAGGGG 4292
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 4293 GACCCAAATCACTGCTGGTTTTCAATTTTTTTTTAACAATACATTTTTGTGGTCAGTTCCAACAGCACTGTCCG 4366
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 4367 TACTTTTAAAACTGGAATGACCTCCTTCAGATATCGTGCCTCTTAGTGCCAAACCCACAGTGAGACCAAAAGTG 4440
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 4441 TCAGGTGTTTTTTTTTTTTTCTTTCTCCTTTGCACTAAGTGCTTTGCAGACACGGCACAGCAAACATTTTGCAA 4514
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 4515 ACTGCAGCAGAAATCGAATTTAAAACAAAAAGGAGGGACTTTAAAATACCTTCTTGACAAAAATCAACAATGCA 4588
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 4589 CAACTTACAAAGTGTTCATTCTAGGGACAAAATTAAATAAACAGAATGTCCCCAGGAGTCAGCAGGTCACAGTC 4662
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 4663 TGGCTTTGTGATGGTTGACAAGGTCTAGCTACATGGGAAAGCCTGAGAAGTCACTTTGGAACTAAATTGCCTCC 4736
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 4737 ATTTTATTTTGTACGAGTAAGGGTTTGATCTACAAAAGAGCTCACATGGACGCACTGAGAACGCCTGCCAGCTT 4810
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 4811 CCCCATGCCCTCACTTGGTTTGTGTTTTAGGTTAAGTAGTCAATGCCCACATCACTTCACTGTCTCAAGACTGA 4884
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 4885 GCACTTCACTAAATGGTAGATTTTACTGTTAAAGACCCTACAATAAGATTGTTTTATCTGTACATTTTTTCAGA 4958
Query 1654 -------------------------------------------------------------------------- 1653
Sbjct 4959 TATTTAACTGTATAAAAATGTTCATTTTACACAATATTTAATTAAAGTATTTCTTGTCTGTGAATTTCACTTTT 5032
Query 1654 -------------------------------------------- 1653
Sbjct 5033 GGTAATTTTCTCTGTTTTTGATTATTAAAATGACTAAACACTAA 5076