Nucleotide Global Alignment

Description

Query:
ccsbBroad304_05835
Subject:
XM_006541425.1
Aligned Length:
1492
Identities:
1341
Gaps:
5

Alignment

Query    1  ATGACTTTTAACAGTTTTGAAGGATCTAAAACTTGTGTACCTGCAGACATCAATAAGGAAGAAGAATTTGTAGA  74
            ||||||||||||||||||||||||.|||.|||||.|||||.||||||||.|||||||||.||||||||||||||
Sbjct    1  ATGACTTTTAACAGTTTTGAAGGAACTAGAACTTTTGTACTTGCAGACACCAATAAGGATGAAGAATTTGTAGA  74

Query   75  AGAGTTTAATAGATTAAAAACTTTTGCTAATTTTCCAAGTGGTAGTCCTGTTTCAGCATCAACACTGGCACGAG  148
            |||||||||||||||||||||.||||||||.||.||||||.|||||||||||||||||||||||.||||.||||
Sbjct   75  AGAGTTTAATAGATTAAAAACATTTGCTAACTTCCCAAGTAGTAGTCCTGTTTCAGCATCAACATTGGCGCGAG  148

Query  149  CAGGGTTTCTTTATACTGGTGAAGGAGATACCGTGCGGTGCTTTAGTTGTCATGCAGCTGTAGATAGATGGCAA  222
            |.||||||||||||||.|||||||||||.|||||||..||.||.|||||||||||.||..|||||||||||||.
Sbjct  149  CTGGGTTTCTTTATACCGGTGAAGGAGACACCGTGCAATGTTTCAGTTGTCATGCGGCAATAGATAGATGGCAG  222

Query  223  TATGGAGACTCAGCAGTTGGAAGACACAGGAAAGTATCCCCAAATTGCAGATTTATCAACGGCTTTTATCTTGA  296
            ||||||||||||||.||||||||||||||||.|.|||||||||||||||||||||||||.||.||||||.||||
Sbjct  223  TATGGAGACTCAGCTGTTGGAAGACACAGGAGAATATCCCCAAATTGCAGATTTATCAATGGTTTTTATTTTGA  296

Query  297  AAATAGTGCCACGCAGTCTACAAATTCTGGTATCCAGAATGGTCAGTACAAAGTTGAAAACTATCTGGGAAGCA  370
            ||||.||||..|.||||||||||||.||||||||||.|||||.|||||||||..||||||||.|.||||||..|
Sbjct  297  AAATGGTGCTGCACAGTCTACAAATCCTGGTATCCAAAATGGCCAGTACAAATCTGAAAACTGTGTGGGAAATA  370

Query  371  GAGATCATTTTGCCTTAGACAGGCCATCTGAGACACATGCAGACTATCTTTTGAGAACTGGGCAGGTTGTAGAT  444
            ||.|||.|||||||...|||||||||.|||||||.|||||.||.|||||.|||||||||||.||||||||||||
Sbjct  371  GAAATCCTTTTGCCCCTGACAGGCCACCTGAGACTCATGCTGATTATCTCTTGAGAACTGGACAGGTTGTAGAT  444

Query  445  ATATCAGACACCATATACCCGAGGAACCCTGCCATGTATAGTGAAGAAGCTAGATTAAAGTCCTTTCAGAACTG  518
            ||.||||||||||||||||||||||||||||||||||.||||||||||||.|||||.|||||.|||||||||||
Sbjct  445  ATTTCAGACACCATATACCCGAGGAACCCTGCCATGTGTAGTGAAGAAGCCAGATTGAAGTCATTTCAGAACTG  518

Query  519  GCCAGACTATGCTCACCTAACCCCAAGAGAGTTAGCAAGTGCTGGACTCTACTACACAGGTATTGGTGACCAAG  592
            |||.|||||||||||..|||||||.|||||||||||.||||||||.||||||||||||||...||.|||.||||
Sbjct  519  GCCGGACTATGCTCATTTAACCCCCAGAGAGTTAGCTAGTGCTGGCCTCTACTACACAGGGGCTGATGATCAAG  592

Query  593  TGCAGTGCTTTTGTTGTGGTGGAAAACTGAAAAATTGGGAACCTTGTGATCGTGCCTGGTCAGAACACAGGCGA  666
            ||||.||||||||||||||.|||||||||||||||||||||||.|||||||||||||||||||||||||||.||
Sbjct  593  TGCAATGCTTTTGTTGTGGGGGAAAACTGAAAAATTGGGAACCCTGTGATCGTGCCTGGTCAGAACACAGGAGA  666

Query  667  CACTTTCCTAATTGCTTCTTTGTTTTGGGCCGGAATCTTAATATTCGAAGTGAATCTGATGCTGTGAGTTCTGA  740
            ||||||||.||||||||.|||||||||||||||||..|||||.|||||||||||||   ||.||||||||||||
Sbjct  667  CACTTTCCCAATTGCTTTTTTGTTTTGGGCCGGAACGTTAATGTTCGAAGTGAATC---TGGTGTGAGTTCTGA  737

Query  741  TAGGAATTTCCCAAATTCAACAAATCT-TCCAAGAAATCCATCCATGGCAGATTATGAAGCACGGATCTTTACT  813
            |||||||||||||||||||||||| || |||||||||||||.||||||||||.|||||||||||||||.|||||
Sbjct  738  TAGGAATTTCCCAAATTCAACAAA-CTCTCCAAGAAATCCAGCCATGGCAGAATATGAAGCACGGATCGTTACT  810

Query  814  TTTGGGACATGGATATACTCAGTTAACAAGGAGCAGCTTGCAAGAGCTGGATTTTATGCTTTAGGTGAAGGTGA  887
            |||||.|||||||.||.||||||||||||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct  811  TTTGGAACATGGACATCCTCAGTTAACAAGGAGCAGCTTGCAAGAGCTGGATTTTATGCTTTAGGTGAAGGCGA  884

Query  888  TAAAGTAAAGTGCTTTCACTGTGGAGGAGGGCTAACTGATTGGAAGCCCAGTGAAGACCCTTGGGAACAACATG  961
            ||||||.||||||||||||||||||||||||||.||.|||||||||||.||||||||||||||||||||.||||
Sbjct  885  TAAAGTGAAGTGCTTTCACTGTGGAGGAGGGCTCACGGATTGGAAGCCAAGTGAAGACCCTTGGGAACAGCATG  958

Query  962  CTAAATGGTATCCAGGGTGCAAATATCTGTTAGAACAGAAGGGACAAGAATATATAAACAATATTCATTTAACT  1035
            |.||.|||||.||||||||||||||.||.||.||..|||||||.||||||||||||||.||||||||||||||.
Sbjct  959  CGAAGTGGTACCCAGGGTGCAAATACCTATTGGATGAGAAGGGGCAAGAATATATAAATAATATTCATTTAACC  1032

Query 1036  CATTCACTTGAGGAGTGTCTGGTAAGAACTACTGAGAAAACACCATCACTAACTAGAAGAATTGATGATACCAT  1109
            ||||||||||||||.|.|.|||.|||||||.||||.|||||||||||.|||||||.||.|||.|||||||||||
Sbjct 1033  CATTCACTTGAGGAATCTTTGGGAAGAACTGCTGAAAAAACACCATCGCTAACTAAAAAAATCGATGATACCAT  1106

Query 1110  CTTCCAAAATCCTATGGTACAAGAAGCTATACGAATGGGGTTCAGTTTCAAGGACATTAAGAAAATAATGGAGG  1183
            ||||||.|||||||||||.||||||||||||||||||||.||.||.|||||||||||||||||||.||||||.|
Sbjct 1107  CTTCCAGAATCCTATGGTGCAAGAAGCTATACGAATGGGATTTAGCTTCAAGGACATTAAGAAAACAATGGAAG  1180

Query 1184  AAAAAATTCAGATATCTGGGAGCAACTATAAATCACTTGAGGTTCTGGTTGCAGATCTAGTGAATGCTCAGAAA  1257
            |||||||.||.|.|||.|||||||.||||..||||||||||||.|||.||||||||||.||||.||||||||||
Sbjct 1181  AAAAAATCCAAACATCCGGGAGCAGCTATCTATCACTTGAGGTCCTGATTGCAGATCTTGTGAGTGCTCAGAAA  1254

Query 1258  GACAGTATGCAAGATGAGTCAAGTCAGACTTCATTACAGAAAGAGATTAGTACTGAAGAGCAGCTAAGGCGCCT  1331
            ||.|.||.|.|.||||||||||||||.||||||||.||||||||.|||||||||||||||||||||||||||||
Sbjct 1255  GATAATACGGAGGATGAGTCAAGTCAAACTTCATTGCAGAAAGACATTAGTACTGAAGAGCAGCTAAGGCGCCT  1328

Query 1332  GCAAGAGGAGAAGCTTTGCAAAATCTGTATGGATAGAAATATTGCTATCGTTTTTGTTCCTTGTGGACATCTAG  1405
            .|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct 1329  ACAAGAGGAGAAGCTTTGCAAAATCTGTATGGATAGAAATATTGCTATCGTTTTTGTTCCTTGTGGACATCTGG  1402

Query 1406  TCACTTGTAAACAATGTGCTGAAGCAGTTGACAAGTGTCCCATGTGCTACACAGTCATTACTTTCAAGCAAAAA  1479
            |||||||||||||.|||||.||||||||||||||.|||||||||||||||||.||||||||.||||||||||||
Sbjct 1403  TCACTTGTAAACAGTGTGCAGAAGCAGTTGACAAATGTCCCATGTGCTACACCGTCATTACGTTCAAGCAAAAA  1476

Query 1480  ATTTTGATGTCT  1491
            |||||.||||||
Sbjct 1477  ATTTTTATGTCT  1488

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.