Nucleotide Global Alignment

Description

Query:
ccsbBroad304_06702
Subject:
NM_011055.2
Aligned Length:
3392
Identities:
2816
Gaps:
151

Alignment

Query    1  ATGAGGAGGGACGAGCGAGA--------CGCCAAAGCCATGCGGTCCCTGCAGCCGCCG---GATGGGGCCGGC  63
            |||||||..||||||||.||        ||||  |||||||.||||||.||.|||||||   |....|||||.|
Sbjct    1  ATGAGGAAAGACGAGCGCGAGCGGGACGCGCC--AGCCATGAGGTCCCCGCCGCCGCCGCCAGCCTCGGCCGCC  72

Query   64  TCGCCCCCCGAGAGTCTGAGGAACGGCTACGTGAAGAGCTGCGTGAGCCCCTTGCGGCAGGACCCTCCGCGCGG  137
            ||||||||||||||.|||.|.|||||||||||||||||||||||||||||..||||||||||||||||||||.|
Sbjct   73  TCGCCCCCCGAGAGCCTGCGCAACGGCTACGTGAAGAGCTGCGTGAGCCCGCTGCGGCAGGACCCTCCGCGCAG  146

Query  138  CTTCTTCTTCCACCTCTGCCACTTCTGCAACGTGGAGCTGCGGCCGCCGCCGGCCTCTCCCCAGCAGCCGCGGC  211
            ||||||||||||||||||||.|||||||||||||||      |||||||.|||||||                 
Sbjct  147  CTTCTTCTTCCACCTCTGCCGCTTCTGCAACGTGGA------GCCGCCGGCGGCCTC-----------------  197

Query  212  GCTGCTCCCCCTTCTGCC-GGGCGCGCCTCTCGCTGGGCGCCCTGGCTGCCTTTGTCCTCGCCCTGCTGCTGGG  284
               |||||.|     ||| ||||.|||||||||||.||||.||||||.|||||||||||.|||..|||||||||
Sbjct  198  ---GCTCCGC-----GCCGGGGCACGCCTCTCGCTCGGCGTCCTGGCCGCCTTTGTCCTGGCCGCGCTGCTGGG  263

Query  285  CGCGGAACCCGAGAGCTGGGCTGCCGGGGCCGCCTGGCTGCGGACGCTGCTGAGCGTGTGTTCGCACAGCTTGA  358
            ||||...||||||.|||||||.||||.|||.|||.||||.||||||||||||||||..||.||||.||||.|.|
Sbjct  264  CGCGAGGCCCGAGCGCTGGGCGGCCGCGGCAGCCGGGCTCCGGACGCTGCTGAGCGCCTGCTCGCTCAGCCTCA  337

Query  359  GCCCCCTCTTCAGCATCGCCTGTGCCTTCTTCTTCCTCACCTGCTTCCTCACCCGGACCAAGCGGGGACCCGGC  432
            ||||.||||||||||||||||||||||||||||||||||||||.|||||.||.||..|..||||      ||||
Sbjct  338  GCCCGCTCTTCAGCATCGCCTGTGCCTTCTTCTTCCTCACCTGTTTCCTGACGCGCGCGCAGCG------CGGC  405

Query  433  CCGGGCCGGAGCTGCGGCTCCTGGTGGCTGCTGGCGCTGCCCGCCTGCTGTTACCTGGGGGACTTCTTGGTGTG  506
            ||||||||..||..||||||||||||||||||||||||||||||||||||.||||||||.||||||..||.|||
Sbjct  406  CCGGGCCGCGGCGCCGGCTCCTGGTGGCTGCTGGCGCTGCCCGCCTGCTGCTACCTGGGCGACTTCGCGGCGTG  479

Query  507  GCAGTGGTGGTCTTGGCCTTGGGGGGATGGCGACGCAGGGTCCGCGGCCCCGCACACGCCCCCGGAGGCGGCAG  580
            ||||||||||||.||||...|.|||||                   |||                 ||||||.|
Sbjct  480  GCAGTGGTGGTCGTGGCTGCGTGGGGA-------------------GCC-----------------GGCGGCGG  517

Query  581  CGGGCAGGTTGCTG-CTGGTGCTGAGCTGCGTAGGGCTGCTGCTGACGCTCGCGCACCCGC-TGCGGCTGCGGC  652
            |||||.||.| ||| |||||||||||||||||.||   ||||||||||||||||| ||||| ||.|||||||||
Sbjct  518  CGGGCCGGCT-CTGCCTGGTGCTGAGCTGCGTGGG---GCTGCTGACGCTCGCGC-CCCGCGTGAGGCTGCGGC  586

Query  653  ACTGCGTTCTGGTGCTGCTCCTGGCCAGCTTCGTCTGGTGGGTCTCCTTCACCAGCCTCGGGTCGCTGCCCTCC  726
            ||.||||.||||||||||||.|.|||.||.|.||.||||||||.||||||.||.||||||||.|.|||||..||
Sbjct  587  ACGGCGTCCTGGTGCTGCTCTTCGCCGGCCTGGTGTGGTGGGTGTCCTTCTCCGGCCTCGGGGCTCTGCCGCCC  660

Query  727  GCCCTCAGGCCGCTGCTCTCCGGCCTGGTGGGGGGCGCTGGCTGCCTGCTGGCCCTGGGGTTGGATCACTTCTT  800
            ||.||||||||.|||||.||..|||||||.||||||||.||.||||||||.||||||||.|||||.||||||||
Sbjct  661  GCGCTCAGGCCTCTGCTGTCGTGCCTGGTCGGGGGCGCGGGATGCCTGCTAGCCCTGGGCTTGGACCACTTCTT  734

Query  801  TCAAATCAGGGAAGCGCCTCTTCATCCTCGACT-GTCCAGTGCCGCCGAAGAAAAAGTGCCTGTGATCCGACCC  873
            |||..||.|||.|||..|.|.||..||.|| || |.|.|||.||||.||.||||||||||||||||||.|||||
Sbjct  735  TCACGTCCGGGGAGCCTCCCCTCCGCCGCG-CTCGGCGAGTACCGCGGAGGAAAAAGTGCCTGTGATCAGACCC  807

Query  874  CGGAGGAGGTCCAGCTGCGTGTCGTTAGGAGAAACTGCAGCCAGTTACTATGGCAGTTGCAAAATATTCAGGAG  947
            ||||||||||||||||||||||||.|.|||||||..||||||.||||||||||||||.||||.||.||||||||
Sbjct  808  CGGAGGAGGTCCAGCTGCGTGTCGCTGGGAGAAAGCGCAGCCGGTTACTATGGCAGTGGCAAGATGTTCAGGAG  881

Query  948  ACCGTCGTTGCCTTGTATTTCCAGAGAACAGATGATTCTTTGGGATTGGGACTTAAAACAATGGTATAAGCCTC  1021
            ||||||||||||||||||||||.|||||||||||||.||.|||||.||||||||.||.||.||||.|||.||||
Sbjct  882  ACCGTCGTTGCCTTGTATTTCCCGAGAACAGATGATCCTCTGGGACTGGGACTTGAAGCAGTGGTGTAAACCTC  955

Query 1022  ATTATCAAAATTCTGGAGGTGGAAATGGAGTTGATCTTTCAGTGCTAAATGAGGCTCGCAATATGGTGTCAGAT  1095
            ||||.||.||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||.
Sbjct  956  ATTACCAGAATTCTGGAGGTGGAAATGGAGTTGATCTTTCAGTGCTAAATGAAGCTCGCAATATGGTGTCAGAC  1029

Query 1096  CTTCTGACTGATCCAAGCCTTCCACCACAAGTCATTTCCTCTCTACGGAGTATTAGTAGCTTAATGGGTGCTTT  1169
            ||.||||.|||.|||||||||||.||||||||||||||.|||||.||||||||.||||||||.|||||||||||
Sbjct 1030  CTGCTGATTGACCCAAGCCTTCCCCCACAAGTCATTTCTTCTCTGCGGAGTATCAGTAGCTTGATGGGTGCTTT  1103

Query 1170  CTCAGGTTCCTGTAGGCCAAAGATTAATCCTCTCACACCATTTCCTGGATTTTACCCCTGTTCTGAAATAGAGG  1243
            ||||||||||||||||||||||||||||.||.|.||||||||||||||||||||.|||||.||||||.||||.|
Sbjct 1104  CTCAGGTTCCTGTAGGCCAAAGATTAATTCTTTTACACCATTTCCTGGATTTTATCCCTGCTCTGAAGTAGAAG  1177

Query 1244  ACCCAGCTGAGAAAGGGGATAGAAAACTTAACAAGGGACTAAAT---AGGAATAGTTTGCCAACTCCACAGCTG  1314
            |.||||.|||||||||.|||.||||||||.||||||||.|.|.|   ||.|..|||||.|||||||||||||||
Sbjct 1178  ATCCAGTTGAGAAAGGAGATCGAAAACTTCACAAGGGATTGAGTGGCAGAACCAGTTTCCCAACTCCACAGCTG  1251

Query 1315  AGGAGAAGCTCGGGAACTTCAGGATTGCTACCTGTTGAACAGTCTTCAAGGTGGGATCGTAATAATGGCAAAAG  1388
            |||||.|||||.|||.|.|||...|||||..||..|||.||.|.|||||||||||||||.|..|.|||.||.||
Sbjct 1252  AGGAGGAGCTCTGGAGCCTCATCGTTGCTGACTAATGAGCACTGTTCAAGGTGGGATCGCAGCAGTGGTAAGAG  1325

Query 1389  GCCTCACCAAGAATTTGGCATTTCAAGTCAAGGATGCTATCTAAATGGGCCTTTTAATTCAAATCTACTGACTA  1462
            |.||.||||||||.|..|..||||||||||.||||||.|.||||||||||||||||.|||||||||..|.||.|
Sbjct 1326  GTCTTACCAAGAACTCAGTGTTTCAAGTCATGGATGCCACCTAAATGGGCCTTTTAGTTCAAATCTTTTTACAA  1399

Query 1463  TCCCGAAGCAAAGGTCATCTTCTGTATCACTGACTCACCATGTAGGTCTCAGAAGAGCTGGTGTTTTGTCCAGT  1536
            |.||.|||||.||||||||.|||||.||||||||.|||||||.||||||.|||||||||||||.||||.||||.
Sbjct 1400  TTCCAAAGCAGAGGTCATCGTCTGTGTCACTGACGCACCATGCAGGTCTGAGAAGAGCTGGTGCTTTGCCCAGC  1473

Query 1537  CTGAGTCCTGTGAATTCTTCCAACCATGGACCAGTGTCTACTGGCTCTCTAACTAATCGATCACCCATAGAATT  1610
            |..||||.|.||||||||||.|.|||||.||||||||||.||||||||||||||||||||||||||||||.|||
Sbjct 1474  CACAGTCTTCTGAATTCTTCAAGCCATGTACCAGTGTCTGCTGGCTCTCTAACTAATCGATCACCCATAGGATT  1547

Query 1611  TCCTGATACTGCTGATTTTCTTAATAAGCCAAGCGTTATCTTGCAGAGATCTCTGGGCAATGCACCTAATACTC  1684
            |||||||||..||||||||||||.||||||||...||||.||.||.|||||.|||||||.||.|.|.|.|.|..
Sbjct 1548  TCCTGATACCACTGATTTTCTTACTAAGCCAAATATTATTTTACATAGATCACTGGGCAGTGTATCAAGTGCAG  1621

Query 1685  CAGATTTTTATCAGCAACTTAGAAATTCTGATAGCAATCTGTGTAACAGCTGTGGACATCAAATGCTGAAATAT  1758
            |||||||..|||||.|.|||||.||.|||||.|||||||||||||.||||||||||||.|||||.||.||||||
Sbjct 1622  CAGATTTCCATCAGTACCTTAGGAACTCTGACAGCAATCTGTGTAGCAGCTGTGGACACCAAATACTCAAATAT  1695

Query 1759  GTTTCAACATCTGAATCAGATGGTACAGATTGCTGCAGTGGAAAATCAGGTGAAGAAGAAAACA---TTTTCTC  1829
            ||||||||||.||||.|.|||||||||||...|..|||||.||||||||||||||||||.|.||   |||||||
Sbjct 1696  GTTTCAACATGTGAACCCGATGGTACAGACCACCCCAGTGAAAAATCAGGTGAAGAAGACAGCAGTGTTTTCTC  1769

Query 1830  GAAAGAATCATTCAAACTTATGGAAACTCAACAAGAAGAGGAAACAGAGAAGAAAGACAGCAGAAAATTATTTC  1903
            .||||||.||||.||..||.|||||||.|||.||||||||   ||...||||||||.|.||||..|.||||||.
Sbjct 1770  AAAAGAACCATTGAACATTGTGGAAACCCAAGAAGAAGAG---ACCATGAAGAAAGCCTGCAGGGAGTTATTTT  1840

Query 1904  AGGAAGGTGATAAGT-GGCTAACAGAAGAGGCACAGAGTGAACAGCAAACAAATATTGAACAGGAAGTATCACT  1976
            .|||||||||| ||| ..||.|..||||||||         |||||||.|||||||.||.||||||||.|||||
Sbjct 1841  TGGAAGGTGAT-AGTCACCTGATGGAAGAGGC---------ACAGCAACCAAATATCGATCAGGAAGTGTCACT  1904

Query 1977  GGACCTGATTTTAGTAGAAGAGTATGACTCATTAATAGAAAAGATGAGCAACTGGAATTTTCCAATTTTTGAAC  2050
            |||.|..||.|||||||||||.|||||.|||||||||||||||||||.||||||||||||||..||||||||.|
Sbjct 1905  GGATCCAATGTTAGTAGAAGATTATGATTCATTAATAGAAAAGATGAACAACTGGAATTTTCAGATTTTTGAGC  1978

Query 2051  TTGTAGAAAAGATGGGAGAGAAATCAGGAAGGATTCTCAGTCAGGTTATGTATACCTTATTTCAAGACACTGGT  2124
            |||||||||||||||||||.|||||||||||||||||||||||||||||||||||.|||||||||||.||||||
Sbjct 1979  TTGTAGAAAAGATGGGAGAAAAATCAGGAAGGATTCTCAGTCAGGTTATGTATACTTTATTTCAAGATACTGGT  2052

Query 2125  TTATTGGAAATATTTAAAATTCCCACTCAACAATTTATGAACTATTTTCGTGCATTAGAAAATGGCTATCGAGA  2198
            ||||||||||.|||||||||||||||||||.||||||||||.|||||||||||.||||||||||||||.||.||
Sbjct 2053  TTATTGGAAACATTTAAAATTCCCACTCAAGAATTTATGAATTATTTTCGTGCCTTAGAAAATGGCTACCGGGA  2126

Query 2199  CATTCCTTATCACAATCGTATACATGCCACAGATGTGCTACATGCAGTTTGGTATCTGACAACACGGCCAGTTC  2272
            ||||||.||||||||||||.|.||||||||||||||.||||||||.|||||||||.|||||||.||.|||.|||
Sbjct 2127  CATTCCATATCACAATCGTGTGCATGCCACAGATGTCCTACATGCTGTTTGGTATTTGACAACCCGACCAATTC  2200

Query 2273  CTGGCTTACAGCAGATCCACAATGGTTGTGGAACAGGAAATGAAA-CAGATTCTGATGGTAGAATTAACCATGG  2345
            |||||||||..||||||||.|||.....||.||| |||||..||| |||||||.|||||||||.||.....|||
Sbjct 2201  CTGGCTTACCTCAGATCCATAATAACCATGAAAC-GGAAACCAAAGCAGATTCAGATGGTAGACTTGGTTCTGG  2273

Query 2346  GCGAATTGCTTATATTTCTTCGAAGAGCTGCTCTAATCCTGATGAGAGTTATGGCTGCCTGTCTTCAAACATTC  2419
            .|..||||||||.||||||||||||||.||||.||.|||.|||..|||||||||||||||.|||||||||||.|
Sbjct 2274  ACAGATTGCTTACATTTCTTCGAAGAGTTGCTGTATTCCAGATATGAGTTATGGCTGCCTATCTTCAAACATCC  2347

Query 2420  CTGCATTAGAATTGATGGCTCTATACGTGGCAGCTGCCATGCATGATTATGATCACCCAGGGAGGACAAATGCA  2493
            ||||||||||||||||||||.|.||.|||||||||||||||||.|||||.|||||||||||.||.||||||||.
Sbjct 2348  CTGCATTAGAATTGATGGCTTTGTATGTGGCAGCTGCCATGCACGATTACGATCACCCAGGAAGAACAAATGCG  2421

Query 2494  TTTCTAGTGGCTACAAATGCCCCTCAGGCAGTTTTATACAATGACAGATCTGTTCTGGAAAATCATCATGCTGC  2567
            ||||||||||||||||||||.|||||||||||||||||||||||||||||||||||.||.||||||||||||||
Sbjct 2422  TTTCTAGTGGCTACAAATGCACCTCAGGCAGTTTTATACAATGACAGATCTGTTCTAGAGAATCATCATGCTGC  2495

Query 2568  GTCAGCTTGGAATCTATATCTTTCTCGCCCAGAATACAACTTCCTTCTTCATCTTGATCATGTGGAATTCAAGC  2641
            .||||||||||||||.|||||||||||||||||.|||||||||||.|||.|.||||||||..||||||||||||
Sbjct 2496  ATCAGCTTGGAATCTGTATCTTTCTCGCCCAGAGTACAACTTCCTCCTTAACCTTGATCACATGGAATTCAAGC  2569

Query 2642  GCTTTCGTTTTTTAGTCATTGAAGCAATCCTTGCTACGGATCTTAAAAAGCATTTTGATTTTCTCGCAGAATTC  2715
            |.|||||.||||||||.||.|||||||||||||||||.|||||.|||||.|||||||||||.||.|||||||||
Sbjct 2570  GGTTTCGATTTTTAGTTATAGAAGCAATCCTTGCTACAGATCTCAAAAAACATTTTGATTTCCTTGCAGAATTC  2643

Query 2716  AATGCCAAGGCAAATGATGTAAATAGTAATGGCATAGAATGGAGTAATGAAAATGATCGCCTCTTGGTATGCCA  2789
            |||||||||||.|||||||||||||||||.||.|||||||||||.|.||||||.||||||||||||||.|||||
Sbjct 2644  AATGCCAAGGCCAATGATGTAAATAGTAACGGTATAGAATGGAGCAGTGAAAACGATCGCCTCTTGGTCTGCCA  2717

Query 2790  GGTGTGCATCAAACTGGCAGATATAAATGGCCCAGCAAAAGTTCGAGACTTGCATTTGAAATGGACAGAAGGCA  2863
            |||||||||||||.|.||||||||.||||||||||||||||.|||.|||.|.|||||||.||||||||||||||
Sbjct 2718  GGTGTGCATCAAATTAGCAGATATCAATGGCCCAGCAAAAGATCGGGACCTACATTTGAGATGGACAGAAGGCA  2791

Query 2864  TTGTCAATGAATTTTATGAGCAGGGAGATGAAGAAGCAAATCTTGGTCTGCCCATCAGTCCATTCATGGATCGT  2937
            ||||.||||||||||||||||||||||||||||||||||..||.|||||.||.||.|||||.||||||||||||
Sbjct 2792  TTGTGAATGAATTTTATGAGCAGGGAGATGAAGAAGCAACCCTGGGTCTACCTATTAGTCCCTTCATGGATCGT  2865

Query 2938  TCTTCTCCTCAACTAGCAAAACTCCAAGAATCTTTTATCACCCACATAGTGGGTCCCCTGTGTAACTCCTATGA  3011
            |||||||||||||||||||||||||||||||||||||||||||||||.|||||.||||||||.|||||||||||
Sbjct 2866  TCTTCTCCTCAACTAGCAAAACTCCAAGAATCTTTTATCACCCACATTGTGGGCCCCCTGTGCAACTCCTATGA  2939

Query 3012  TGCTGCTGGTTTGCTACCAGGTCAGTGGTTAGAAGCAGAAGAGGATAATGATACTGAAAGTGGTGATGATGAAG  3085
            |||||||||.|||||.||.|||||||||.|||||.|||||||||.|.|||||||.|||||||.|||||||||.|
Sbjct 2940  TGCTGCTGGCTTGCTGCCGGGTCAGTGGATAGAAACAGAAGAGGGTGATGATACAGAAAGTGATGATGATGATG  3013

Query 3086  A---------------CGGTGAAGAATTAGATACAGAAGATGAAGAAATGGAAAACAATCTAAATCCAAAACCA  3144
            |               .|||||||||||||||.||||.||||||||||..|||.|||||||||||||.||||||
Sbjct 3014  ATGATGATGATGGTGGTGGTGAAGAATTAGATTCAGATGATGAAGAAACAGAAGACAATCTAAATCCTAAACCA  3087

Query 3145  CCAAGAAGGAAAAGCAGACGGCGAATATTTTGTCAGCTAATGCACCACCTCACTGAAAACCACAAGATATGGAA  3218
            |.||||||||||.||||.||||||||||||||.||.||||||||||||||||||||||||||||||||||||||
Sbjct 3088  CAAAGAAGGAAAGGCAGGCGGCGAATATTTTGCCAACTAATGCACCACCTCACTGAAAACCACAAGATATGGAA  3161

Query 3219  GGAAATC---GTAGAGGAAGAAGAAAAATGTAAAGCTGATGGGAATAAACTGCAGGTGGAGAATTCCTCCTTAC  3289
            |||||||   |.|||.|||||||||||||||||||||||.|||||.||||||||||||||.|||.|||||||||
Sbjct 3162  GGAAATCATAGAAGAAGAAGAAGAAAAATGTAAAGCTGAGGGGAACAAACTGCAGGTGGATAATGCCTCCTTAC  3235

Query 3290  CTCAAGCAGATGAGATTCAGGTAATTGAAGAGGCAGATGAAGAGGAA---------------  3336
            ||||.|||||||||||||||||.||||||||.|||||||||||||||               
Sbjct 3236  CTCAGGCAGATGAGATTCAGGTTATTGAAGAAGCAGATGAAGAGGAAGAACAAATGTTTGAA  3297

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