Nucleotide Global Alignment

Description

Query:
ccsbBroad304_07005
Subject:
NM_001001326.1
Aligned Length:
3413
Identities:
3059
Gaps:
13

Alignment

Query    1  ATGGCCATGACTGCCAACAAGAATTCCAGCATCACCCACGGAGCTGGTGGCACTAAAGCCCCTCGGGGGACTCT  74
            |||.|||||||||||||||||||.|||||||||||.||.|||.|.||.||||||||.||||||||||.|||.||
Sbjct    1  ATGACCATGACTGCCAACAAGAACTCCAGCATCACTCATGGAACCGGAGGCACTAAGGCCCCTCGGGAGACGCT  74

Query   75  GAGCAGGTCTCAGTCAGTCTCTCCACCTCCAGTTCTCTCCCCACCAAGGAGTCCCATCTACCCGCTCAGTGATA  148
            ||||||||||||||||||||||||||||||||||.|.|.|||||||||.||||||||||||||.||||||||.|
Sbjct   75  GAGCAGGTCTCAGTCAGTCTCTCCACCTCCAGTTTTATACCCACCAAGAAGTCCCATCTACCCACTCAGTGACA  148

Query  149  GTGAAACCTCAGCCTGCAGGTACCCCAGCCACTCCAGCTCCCGGGTGCTCCTCAAGGACCGGCACCCCCCAGCT  222
            ||||||||||||||||||||||||||||||||||.|..||||.|||||||||||||||||||||..|.|.|..|
Sbjct  149  GTGAAACCTCAGCCTGCAGGTACCCCAGCCACTCTAAATCCCAGGTGCTCCTCAAGGACCGGCATTCTCGAAAT  222

Query  223  CCTTCAC-CCCAGAATCCTCAAGATCCCTCCCCAGATACTTCCCCACCCACCTGTCCCTTCAAGACCGCCAGCT  295
            ||||||| ||.||    .|||||||||.||||||||.||.||.|||||||..|||.||.|||||.|..||||||
Sbjct  223  CCTTCACTCCTAG----GTCAAGATCCGTCCCCAGAAACCTCACCACCCATTTGTACCCTCAAGGCTACCAGCT  292

Query  296  TCGGTTATTTGGACAGAAGCCCTTCGGCGTGCAAGAGAGACGCCCAAAAGGAAAGTGTCCAAGGCGCAGCCCAG  369
            ||.|.|||||||||||||.||||||.....||||.|||||.|.|||.|||||.|.||||||.||.||||.||||
Sbjct  293  TCAGCTATTTGGACAGAACCCCTTCATTACGCAAAAGAGAGGACCAGAAGGAGACTGTCCAGGGTGCAGTCCAG  366

Query  370  GATGTAGCAGGGGTCGCTGCCTGCCTCCCCCTTGCCCAGAGCACGCCATTCC-CGGGGCCAGCAGCTGGCCCCC  442
            |||||||.|||.||.|||||.|||||||||||||||||||||||.||||||| .||||||       ||..|.|
Sbjct  367  GATGTAGAAGGTGTGGCTGCTTGCCTCCCCCTTGCCCAGAGCACCCCATTCCTAGGGGCC-------GGGTCTC  433

Query  443  GGGGCGTCTTGCTGACCCGTACCGGTACCCGCGCCCACAGCCTGGGCATCCGGGAGAAGATATCAGCATGGGAA  516
            ||.|.||||||||||...|.||.||||||||.|||||.||||||||.|||||.||||||||.||||||||||||
Sbjct  434  GGAGTGTCTTGCTGAGTTGCACTGGTACCCGAGCCCATAGCCTGGGTATCCGAGAGAAGATCTCAGCATGGGAA  507

Query  517  GGTCGCCGAGAGGCGTCGCCCAGGATGAGCATGTGTGGAGAGAAGCGGGAGGGCTCTGGGAGCGAGTGGGCGGC  590
            ||||||||||||||.||.|||||||||||..|||||||||||||||||||||||.||||||||||||||.|||.
Sbjct  508  GGTCGCCGAGAGGCTTCACCCAGGATGAGTCTGTGTGGAGAGAAGCGGGAGGGCCCTGGGAGCGAGTGGTCGGT  581

Query  591  CAGTGAGGGCTGCCCCAGCCTGGGCTGTCCCAGCGTGGTGCCGTCCCCCTGCAGCTCTGAAAAGACCTTTGATT  664
            ||||||||||||||||||..|||||||.|||||.||||||||.||||||||||||||.||||||||||||||||
Sbjct  582  CAGTGAGGGCTGCCCCAGTGTGGGCTGCCCCAGTGTGGTGCCATCCCCCTGCAGCTCAGAAAAGACCTTTGATT  655

Query  665  TCAAGGGCCTCCGGAGGATGAGCAGGACCTTCTCCGAGTGTTCCTACCCAGAGACTGAGGAGGAGGGAGAGGCG  738
            ||||.|||||||||||||||||||||||||||||.||||||||||||||.|||||.||||||||||.||||||.
Sbjct  656  TCAAAGGCCTCCGGAGGATGAGCAGGACCTTCTCTGAGTGTTCCTACCCCGAGACAGAGGAGGAGGCAGAGGCA  729

Query  739  CTCCCTGTCCGGGACTCTTTCTACCGGCTGGAGAAACGGCTGGGCCGGAGTGAGCCCAGCGCCTTCCTCAGGGG  812
            ||.||||..|||||||||||.||||||||||||||.||.|..|||||||.|||||||||.|||||.||||||||
Sbjct  730  CTTCCTGGACGGGACTCTTTATACCGGCTGGAGAAGCGTCCAGGCCGGACTGAGCCCAGTGCCTTGCTCAGGGG  803

Query  813  GCATGGCAGCAGGAAGGAGAGCTCAGCAGTGCTGAGCCGGATCCAGAAAATTGAACAGGTCCTGAAGGAGCAGC  886
            ||||||||.||||||.||||||||||||||||||||||||||||||||.||.|||||.|.|||.||||||||||
Sbjct  804  GCATGGCATCAGGAAAGAGAGCTCAGCAGTGCTGAGCCGGATCCAGAAGATCGAACAAGCCCTAAAGGAGCAGC  877

Query  887  CGGGCCGGGGGCTCCCCCAGCTCCCCAGCAGCTGCTACAGCGTGGACCGGGGGAAAAGGAACACTGGAACCTTG  960
            |.||||||||.||||||||||||||.||||||||||||||.||.||||..||||..|||||.||||||||.|||
Sbjct  878  CTGGCCGGGGTCTCCCCCAGCTCCCTAGCAGCTGCTACAGTGTAGACCAAGGGAGGAGGAAGACTGGAACTTTG  951

Query  961  GGCTCCTTGGAGGAGCCGGCAGGGGGCGCGAGTGTGAGCGCTGGCAGCCGGGCAGTCGGAGTGGCTGGTGTTGC  1034
            |||.|||||||||||||..||||....||.|||||.|||.|..|||||.||||||..||||||||.||.|||||
Sbjct  952  GGCACCTTGGAGGAGCCAACAGGAACTGCAAGTGTAAGCCCCAGCAGCAGGGCAGGAGGAGTGGCCGGAGTTGC  1025

Query 1035  GGGGGAGGCGGGCCCACCCCCAGAGAGGGAAGGCAGTGGTTCCACTAAGCCCGGGACCCCTGGAAATAGCCCTA  1108
            .||||||||.||||||||||..||.|||||||||||||.|||||..|||.|.|.||||||||||||||||.|.|
Sbjct 1026  TGGGGAGGCAGGCCCACCCCTGGACAGGGAAGGCAGTGCTTCCATGAAGTCAGAGACCCCTGGAAATAGCTCCA  1099

Query 1109  GCTCCCAGCGGCTGCCATCGAAGAGTTCCCTCGATCCCGCTGTGAACCCTGTCCCCAAACCCAAGCGCACCTTT  1182
            |..||||||.||||||..|||||||.||||..|||||.||||||||||||||.||||||||||||||.||||||
Sbjct 1100  GTCCCCAGCTGCTGCCTCCGAAGAGCTCCCCTGATCCAGCTGTGAACCCTGTTCCCAAACCCAAGCGTACCTTT  1173

Query 1183  GAATACGAGGCTGACAAGAACCCCAAGAGTAAGCCCAGTAATGGTCTACCTCCTTCACCCACACCTGCTGCTCC  1256
            ||.|||||||||||||||||.||.||||.||||||.||.|||||||||||||||||||||||||||||||||||
Sbjct 1174  GAGTACGAGGCTGACAAGAATCCTAAGACTAAGCCAAGCAATGGTCTACCTCCTTCACCCACACCTGCTGCTCC  1247

Query 1257  ACCTCCCTTGCCCTCCACCCCAGCCCCGCCAGTCACCCGGAGACCCAAGAAGGACATGCGTGGTCACCGCAAGT  1330
            |||.||||||||.||||||||||||||.|||||||||||||||||||||||||||||||||||||||||.||||
Sbjct 1248  ACCCCCCTTGCCTTCCACCCCAGCCCCACCAGTCACCCGGAGACCCAAGAAGGACATGCGTGGTCACCGGAAGT  1321

Query 1331  CCCAGAGCAGAAAATCCTTTGAGTTTGAGGATGCATCCAGTCTCCAGTCCCTGTACCCCTCTTCTCCCACTGAG  1404
            |.||||.||||||||||||.||||||||||||||||||||||||||.||||||||.|||||||||||.||||||
Sbjct 1322  CACAGAACAGAAAATCCTTCGAGTTTGAGGATGCATCCAGTCTCCAATCCCTGTATCCCTCTTCTCCTACTGAG  1395

Query 1405  AATGGTACTGAGAACCAACCCAAGTTTGGATCCAAAAGCACTTTAGAAGAAAATGCCTATGAAGATATTGTGGG  1478
            |||||||||||||..|||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct 1396  AATGGTACTGAGAGTCAACCCAAGTTTGGATCCAAAAGCACTTTAGAAGAGAATGCCTATGAAGATATTGTGGG  1469

Query 1479  AGATCTGCCCAAGGAGAATCCATATGAGGATGTGGACTTAAAGAGCCGAAGAGCAGGACGAAAATCCCAGCAAC  1552
            ||..||.||||||||||||||.||.|||||||||||||||||||.|||.|||||.|||||||||||||||||||
Sbjct 1470  AGGGCTTCCCAAGGAGAATCCCTACGAGGATGTGGACTTAAAGAACCGGAGAGCTGGACGAAAATCCCAGCAAC  1543

Query 1553  TGTCTGAGAACTCCTTGGACTCTTTGCACAGGATGTGGAGTCCTCAGGACAGGAAGTACAACAGCCCGCCCACA  1626
            |||||||||||||||||||||||||||||||||||||||||||.||.|||||||||||||||..|||.||||..
Sbjct 1544  TGTCTGAGAACTCCTTGGACTCTTTGCACAGGATGTGGAGTCCCCAAGACAGGAAGTACAACCACCCACCCATG  1617

Query 1627  CAGCTTTCCCTGAAACCCAACAGCCAGTCCCTGCGCAGTGGGAACTGGTCAGAAAGGAAGAGCCACCGGCTGCC  1700
            |||||.||||||||..|||||||||||||||||||||||||||||||||||||||||||||||||.||..||||
Sbjct 1618  CAGCTGTCCCTGAAGTCCAACAGCCAGTCCCTGCGCAGTGGGAACTGGTCAGAAAGGAAGAGCCATCGTTTGCC  1691

Query 1701  ACGATTACCCAAGAGGCACAGCCATGACGACATGCTGCTGCTGGCTCAGCTGAGTCTGCCGTCCTCACCCTCCA  1774
            ||||||||||||||||||.||||||||.||||||.|||||.|||||||||||||.|||||.||.||||||||||
Sbjct 1692  ACGATTACCCAAGAGGCATAGCCATGATGACATGATGCTGTTGGCTCAGCTGAGCCTGCCATCTTCACCCTCCA  1765

Query 1775  GCCTCAATGAAGACAGCCTCAGCACCACCAGCGAGCTGCTGTCCAGCCGCCGGGCCCGCCGCATTCCCAAGCTT  1848
            ||||||||||.|||||||||||||||||.||.||||||||||||||||||.||.||||||||||||||||||||
Sbjct 1766  GCCTCAATGAGGACAGCCTCAGCACCACAAGTGAGCTGCTGTCCAGCCGCAGGTCCCGCCGCATTCCCAAGCTT  1839

Query 1849  GTCCAAAGAACTAACTCCATCTACAATGCCAAGAGAGGAAAGAAGAGATTAAAAAAGTTGTCTATGTCCAGCAT  1922
            ||||||||||.||||||.|||||.|||||||||||||||||||||||.||.||||||.||||||||||||||.|
Sbjct 1840  GTCCAAAGAATTAACTCTATCTATAATGCCAAGAGAGGAAAGAAGAGGTTGAAAAAGCTGTCTATGTCCAGCCT  1913

Query 1923  TGAAACAGCATCACTGAGAGATGAAAACAGTGAGAGCGAGAGCGACTCTGATGACAGGTTCAAAGCCCACACAC  1996
            |||.|||||||||.||||||||||.||||||||.||||||||.|||||||||||||||||||||||||||||.|
Sbjct 1914  TGAGACAGCATCATTGAGAGATGAGAACAGTGAAAGCGAGAGTGACTCTGATGACAGGTTCAAAGCCCACACCC  1987

Query 1997  AGCGCCTGGTCCACATCCAGTCGATGCTGAAGCGCGCCCCCAGCTATCGCACGCTGGAGCTGGAGCTGCTGGAG  2070
            |||||.||||||||||||||||||||||||||||.||.|||||||||||.||||||||||||||||||||.|||
Sbjct 1988  AGCGCTTGGTCCACATCCAGTCGATGCTGAAGCGAGCGCCCAGCTATCGGACGCTGGAGCTGGAGCTGCTCGAG  2061

Query 2071  TGGCAGGAGCGGGAGCTTTTTGAGTACTTTGTGGTGGTGTCCCTCAAGAAGAAGCCATCGCGAAACACCTACCT  2144
            |||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||.||.|||||||||||
Sbjct 2062  TGGCAGGAGCGGGAGCTTTTTGAGTACTTTGTGGTTGTGTCCCTCAAGAAGAAGCCATCTCGGAACACCTACCT  2135

Query 2145  CCCCGAAGTCTCCTACCAGTTTCCCAAGCTGGACCGACCCACCAAGCAGATGCGAGAGGCAGAGGAAAGGCTCA  2218
            |||.|||||||||||.||||||||||||||||||||.||||||||.||||||||.||||||||.||||||||||
Sbjct 2136  CCCTGAAGTCTCCTATCAGTTTCCCAAGCTGGACCGTCCCACCAAACAGATGCGGGAGGCAGAAGAAAGGCTCA  2209

Query 2219  AAGCCATTCCCCAGTTTTGCTTCCCTGATGCCAAGGACTGGCTTCCTGTGTCAGAGTATAGCAGTGAGACCTTT  2292
            ||||.||.||||||||||||||.||.|||||||||||||||||.|||||||||||.||.||||||||.||||||
Sbjct 2210  AAGCTATCCCCCAGTTTTGCTTTCCGGATGCCAAGGACTGGCTCCCTGTGTCAGAATACAGCAGTGAAACCTTT  2283

Query 2293  TCTTTCATGCTGACTGGGGAAGATGGCGGCAGACGCTTTGGCTACTGCAGGCGCTTACTGCCAAGTGGGAAAGG  2366
            |||||||||||||||||||||||||||.||||.|||||||||||.||.||||||||||||||||||||||||||
Sbjct 2284  TCTTTCATGCTGACTGGGGAAGATGGCAGCAGGCGCTTTGGCTATTGTAGGCGCTTACTGCCAAGTGGGAAAGG  2357

Query 2367  GCCCCGGTTGCCAGAGGTGTACTGTGTCATCAGCCGCCTTGGCTGCTTCGGCTTGTTTTCCAAGGTCCTAGATG  2440
            |||.|||||||||||||||||||||||||||||||||||.|||||||||||.||||||||||||||||||||||
Sbjct 2358  GCCTCGGTTGCCAGAGGTGTACTGTGTCATCAGCCGCCTAGGCTGCTTCGGTTTGTTTTCCAAGGTCCTAGATG  2431

Query 2441  AGGTGGAGCGCCGGCGTGGGATCTCCGCTGCATTGGTCTATCCTTTCATGAGAAGTCTCATGGAGTCGCCCTTC  2514
            |||||||||||||||||||||||||.||||||.|||||||.||.||||||||||||||||||||.||||||||.
Sbjct 2432  AGGTGGAGCGCCGGCGTGGGATCTCAGCTGCACTGGTCTACCCCTTCATGAGAAGTCTCATGGAATCGCCCTTT  2505

Query 2515  CCAGCCCCAGGGAAGACCATCAAAGTGAAGACATTCCTGCCAGGTGCTGGCAATGAGGTGTTAGAGCTGCGGCG  2588
            ||||||||||||||.||||||||||||||||||||.||.||.||.||||||||||||||||||||||||||.||
Sbjct 2506  CCAGCCCCAGGGAAAACCATCAAAGTGAAGACATTTCTTCCCGGCGCTGGCAATGAGGTGTTAGAGCTGCGTCG  2579

Query 2589  GCCCATGGACTCAAGGCTGGAGCACGTGGACTTTGAGTGCCTTTTTACCTGCCTCAGTGTGCGCCAGCTCATCC  2662
            |||.||||||||..|.||||||||||||||||||||||||||.||.|||||||||||||||||.|||||.||||
Sbjct 2580  GCCTATGGACTCCCGCCTGGAGCACGTGGACTTTGAGTGCCTCTTCACCTGCCTCAGTGTGCGTCAGCTTATCC  2653

Query 2663  GAATCTTTGCCTCACTGCTGCTGGAGCGCCGGGTCATTTTTGTGGCAGATAAGCTCAGTACCCTCTCCAGCTGC  2736
            ||||||||||||||.|||||.||||.|||.|.|||||||||||.||||||||||||||||||||.|||||||||
Sbjct 2654  GAATCTTTGCCTCATTGCTGTTGGAACGCAGAGTCATTTTTGTAGCAGATAAGCTCAGTACCCTGTCCAGCTGC  2727

Query 2737  TCCCACGCGGTGGTGGCCTTGCTCTACCCCTTCTCCTGGCAGCACACCTTCATTCCTGTCCTCCCGGCCTCCAT  2810
            ||.||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||.||||||||
Sbjct 2728  TCTCACGCGGTGGTGGCCTTGCTCTACCCCTTCTCCTGGCAGCACACATTCATTCCTGTCCTCCCAGCCTCCAT  2801

Query 2811  GATTGACATCGTCTGCTGTCCCACCCCCTTCCTGGTTGGCCTGCTCTCCAGCTCCCTCCCCAAACTGAAGGAGC  2884
            |||||||||.|||||||||||||||||.|||||||||||||||||||||||||||||.||||||||||||||||
Sbjct 2802  GATTGACATTGTCTGCTGTCCCACCCCTTTCCTGGTTGGCCTGCTCTCCAGCTCCCTTCCCAAACTGAAGGAGC  2875

Query 2885  TGCCTGTGGAGGAGGCGCTGATGGTGAATCTGGGATCTGACCGATTCATCCGACAGATGGACGACGAAGACACG  2958
            ||||||||||.|||||.||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.
Sbjct 2876  TGCCTGTGGAAGAGGCACTGATGGTGAATCTGGGATCTGACCGATTCATCCGACAGATGGACGACGAGGACACA  2949

Query 2959  TTGTTACCTAGGAAGTTACAGGCAGCTCTGGAGCAGGCTCTGGAGAGGAAGAATGAGCTGATCTCCCAGGACTC  3032
            .||||||||||.|||||.||.||.||||||||||||||||||||||||||||.||||||.||||||||||||||
Sbjct 2950  CTGTTACCTAGAAAGTTGCAAGCTGCTCTGGAGCAGGCTCTGGAGAGGAAGAGTGAGCTCATCTCCCAGGACTC  3023

Query 3033  TGACAGCGACTCCGACGATGAATGTAATACCCTCAATGGGCTGGTGTCGGAGGTGTTTATCCGGTTCTTTGTGG  3106
            ||||||.|||||.||.|||||||||||||||||||||||.||.|||||.|||||||||||||||||||||||||
Sbjct 3024  TGACAGTGACTCTGATGATGAATGTAATACCCTCAATGGACTTGTGTCAGAGGTGTTTATCCGGTTCTTTGTGG  3097

Query 3107  AGACCGTTGGGCACTACTCCCTCTTTCTGACACAGAGTGAGAAGGGAGAGAGGGCCTTTCAGCGAGAGGCCTTC  3180
            ||||.||.||.||||||||||||||.||||||||.|||||||||||.||.|||||.||||||||||||||||||
Sbjct 3098  AGACTGTGGGTCACTACTCCCTCTTCCTGACACACAGTGAGAAGGGGGAAAGGGCTTTTCAGCGAGAGGCCTTC  3171

Query 3181  CGCAAATCTGTGGCCTCCAAAAGCATCCGCCGCTTTCTTGAGGTTTTTATGGAGTCTCAGATGTTTGCTGGCTT  3254
            |||||.|||||||||||||||||.||||||||.||||||||.|||||||||||.||||||||||||||||||||
Sbjct 3172  CGCAAGTCTGTGGCCTCCAAAAGTATCCGCCGTTTTCTTGAAGTTTTTATGGAATCTCAGATGTTTGCTGGCTT  3245

Query 3255  CATCCAAGACAGGGAGCTAAGAAAGTGTCGGGCAAAGGGCCTTTTTGAGCAGCGAGTGGAGCAGTACTTAGAAG  3328
            |||||||||||||||||||||.||||||||.||.||||||||.|||||||||.|||||||.|||||..||||||
Sbjct 3246  CATCCAAGACAGGGAGCTAAGGAAGTGTCGAGCCAAGGGCCTCTTTGAGCAGAGAGTGGAACAGTATCTAGAAG  3319

Query 3329  AACTCCCAGACACTGAGCAGAGTGGAATGAATAAGTTTCTCCGAGGTTTGGGCAACAAAATGAAGTTTCTCCAC  3402
            |.|||||.||||||||||||||.||.|||||.|||||||||||.||..||||||||||.||||||||.||||||
Sbjct 3320  AGCTCCCTGACACTGAGCAGAGCGGGATGAACAAGTTTCTCCGGGGCCTGGGCAACAAGATGAAGTTCCTCCAC  3393

Query 3403  AAGAAGAAT  3411
            |||||||||
Sbjct 3394  AAGAAGAAT  3402

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