Nucleotide Global Alignment

Description

Query:
ccsbBroad304_07005
Subject:
NM_029811.2
Aligned Length:
3415
Identities:
1964
Gaps:
1268

Alignment

Query    1  ATGGCCATGACTGCCAACAAGAATTCCAGCATCACCCACGGAGCTGGTGGCACTAAAGCCCCTCGGGGGACTCT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GAGCAGGTCTCAGTCAGTCTCTCCACCTCCAGTTCTCTCCCCACCAAGGAGTCCCATCTACCCGCTCAGTGATA  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  GTGAAACCTCAGCCTGCAGGTACCCCAGCCACTCCAGCTCCCGGGTGCTCCTCAAGGACCGGCACCCCCCAGCT  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  CCTTCACCCCAGAATCCTCAAGATCCCTCCCCAGATACTTCCCCACCCACCTGTCCCTTCAAGACCGCCAGCTT  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  CGGTTATTTGGACAGAAGCCCTTCGGCGTGCAAGAGAGACGCCCAAAAGGAAAGTGTCCAAGGCGCAGCCCAGG  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  ATGTAGCAGGGGTCGCTGCCTGCCTCCCCCTTGCCCAGAGCACGCCATTCCCGGGGCCAGCAGCTGGCCCCCGG  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  GGCGTCTTGCTGACCCGTACCGGTACCCGCGCCCACAGCCTGGGCATCCGGGAGAAGATATCAGCATGGGAAGG  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  TCGCCGAGAGGCGTCGCCCAGGATGAGCATGTGTGGAGAGAAGCGGGAGGGCTCTGGGAGCGAGTGGGCGGCCA  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  GTGAGGGCTGCCCCAGCCTGGGCTGTCCCAGCGTGGTGCCGTCCCCCTGCAGCTCTGAAAAGACCTTTGATTTC  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  AAGGGCCTCCGGAGGATGAGCAGGACCTTCTCCGAGTGTTCCTACCCAGAGACTGAGGAGGAGGGAGAGGCGCT  740
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  741  CCCTGTCCGGGACTCTTTCTACCGGCTGGAGAAACGGCTGGGCCGGAGTGAGCCCAGCGCCTTCCTCAGGGGGC  814
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  815  ATGGCAGCAGGAAGGAGAGCTCAGCAGTGCTGAGCCGGATCCAGAAAATTGAACAGGTCCTGAAGGAGCAGCCG  888
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  889  GGCCGGGGGCTCCCCCAGCTCCCCAGCAGCTGCTACAGCGTGGACCGGGGGAAAAGGAACACTGGAACCTTGGG  962
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  963  CTCCTTGGAGGAGCCGGCAGGGGGCGCGAGTGTGAGCGCTGGCAGCCGGGCAGTCGGAGTGGCTGGTGTTGCGG  1036
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1037  GGGAGGCGGGCCCACCCCCAGAGAGGGAAGGCAGTGGTTCCACTAAGCCCGGGACCCCTGGAAATAGCCCTAGC  1110
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1111  TCCCAGCGGCTGCCATCGAAGAGTTCCCTCGATCCCGCTGTGAACCCTGTCCCCAAACCCAAGCGCACCTTTGA  1184
                                                                                  .|||
Sbjct    1  ----------------------------------------------------------------------ATGA  4

Query 1185  ATACGAGGCTG---ACAAGAACCCCAAGAGTAAGC-CCAGTAATGGTCTACCTCCTTCACCCACACCTGCTGCT  1254
            ..|.||  |||   ||||||||.||       ||| .||.|.||||                            
Sbjct    5  CCATGA--CTGCCAACAAGAACTCC-------AGCATCACTCATGG----------------------------  41

Query 1255  CCACCTCCCTTGCCCTCCACCCCAGCCCCGCCAGTCACCCGGAGACCCAAGAAGGACATGCGTGGTCACCGCAA  1328
                                                |.||||||  .||..||||.|         |..||..|
Sbjct   42  ------------------------------------AACCGGAG--GCACTAAGGCC---------CCTCGGGA  68

Query 1329  GTCCCAGAGCAGAAAATCCTTTGAGTTTGAGGATGCATCCAGTCTCCAGTCCCTGTACCCCTCTTCTCCCACTG  1402
            |.|.|.|||||||||||||||.||||||||||||||||||||||||||.||||||||.|||||||||||.||||
Sbjct   69  GACGCTGAGCAGAAAATCCTTCGAGTTTGAGGATGCATCCAGTCTCCAATCCCTGTATCCCTCTTCTCCTACTG  142

Query 1403  AGAATGGTACTGAGAACCAACCCAAGTTTGGATCCAAAAGCACTTTAGAAGAAAATGCCTATGAAGATATTGTG  1476
            |||||||||||||||..|||||||||||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct  143  AGAATGGTACTGAGAGTCAACCCAAGTTTGGATCCAAAAGCACTTTAGAAGAGAATGCCTATGAAGATATTGTG  216

Query 1477  GGAGATCTGCCCAAGGAGAATCCATATGAGGATGTGGACTTAAAGAGCCGAAGAGCAGGACGAAAATCCCAGCA  1550
            ||||..||.||||||||||||||.||.|||||||||||||||||||.|||.|||||.|||||||||||||||||
Sbjct  217  GGAGGGCTTCCCAAGGAGAATCCCTACGAGGATGTGGACTTAAAGAACCGGAGAGCTGGACGAAAATCCCAGCA  290

Query 1551  ACTGTCTGAGAACTCCTTGGACTCTTTGCACAGGATGTGGAGTCCTCAGGACAGGAAGTACAACAGCCCGCCCA  1624
            |||||||||||||||||||||||||||||||||||||||||||||.||.|||||||||||||||..|||.||||
Sbjct  291  ACTGTCTGAGAACTCCTTGGACTCTTTGCACAGGATGTGGAGTCCCCAAGACAGGAAGTACAACCACCCACCCA  364

Query 1625  CACAGCTTTCCCTGAAACCCAACAGCCAGTCCCTGCGCAGTGGGAACTGGTCAGAAAGGAAGAGCCACCGGCTG  1698
            ..|||||.||||||||..|||||||||||||||||||||||||||||||||||||||||||||||||.||..||
Sbjct  365  TGCAGCTGTCCCTGAAGTCCAACAGCCAGTCCCTGCGCAGTGGGAACTGGTCAGAAAGGAAGAGCCATCGTTTG  438

Query 1699  CCACGATTACCCAAGAGGCACAGCCATGACGACATGCTGCTGCTGGCTCAGCTGAGTCTGCCGTCCTCACCCTC  1772
            ||||||||||||||||||||.||||||||.||||||.|||||.|||||||||||||.|||||.||.||||||||
Sbjct  439  CCACGATTACCCAAGAGGCATAGCCATGATGACATGATGCTGTTGGCTCAGCTGAGCCTGCCATCTTCACCCTC  512

Query 1773  CAGCCTCAATGAAGACAGCCTCAGCACCACCAGCGAGCTGCTGTCCAGCCGCCGGGCCCGCCGCATTCCCAAGC  1846
            ||||||||||||.|||||||||||||||||.||.||||||||||||||||||.||.||||||||||||||||||
Sbjct  513  CAGCCTCAATGAGGACAGCCTCAGCACCACAAGTGAGCTGCTGTCCAGCCGCAGGTCCCGCCGCATTCCCAAGC  586

Query 1847  TTGTCCAAAGAACTAACTCCATCTACAATGCCAAGAGAGGAAAGAAGAGATTAAAAAAGTTGTCTATGTCCAGC  1920
            ||||||||||||.||||||.|||||.|||||||||||||||||||||||.||.||||||.||||||||||||||
Sbjct  587  TTGTCCAAAGAATTAACTCTATCTATAATGCCAAGAGAGGAAAGAAGAGGTTGAAAAAGCTGTCTATGTCCAGC  660

Query 1921  ATTGAAACAGCATCACTGAGAGATGAAAACAGTGAGAGCGAGAGCGACTCTGATGACAGGTTCAAAGCCCACAC  1994
            .||||.|||||||||.||||||||||.||||||||.||||||||.|||||||||||||||||||||||||||||
Sbjct  661  CTTGAGACAGCATCATTGAGAGATGAGAACAGTGAAAGCGAGAGTGACTCTGATGACAGGTTCAAAGCCCACAC  734

Query 1995  ACAGCGCCTGGTCCACATCCAGTCGATGCTGAAGCGCGCCCCCAGCTATCGCACGCTGGAGCTGGAGCTGCTGG  2068
            .||||||.||||||||||||||||||||||||||||.||.|||||||||||.||||||||||||||||||||.|
Sbjct  735  CCAGCGCTTGGTCCACATCCAGTCGATGCTGAAGCGAGCGCCCAGCTATCGGACGCTGGAGCTGGAGCTGCTCG  808

Query 2069  AGTGGCAGGAGCGGGAGCTTTTTGAGTACTTTGTGGTGGTGTCCCTCAAGAAGAAGCCATCGCGAAACACCTAC  2142
            |||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||.||.|||||||||
Sbjct  809  AGTGGCAGGAGCGGGAGCTTTTTGAGTACTTTGTGGTTGTGTCCCTCAAGAAGAAGCCATCTCGGAACACCTAC  882

Query 2143  CTCCCCGAAGTCTCCTACCAGTTTCCCAAGCTGGACCGACCCACCAAGCAGATGCGAGAGGCAGAGGAAAGGCT  2216
            |||||.|||||||||||.||||||||||||||||||||.||||||||.||||||||.||||||||.||||||||
Sbjct  883  CTCCCTGAAGTCTCCTATCAGTTTCCCAAGCTGGACCGTCCCACCAAACAGATGCGGGAGGCAGAAGAAAGGCT  956

Query 2217  CAAAGCCATTCCCCAGTTTTGCTTCCCTGATGCCAAGGACTGGCTTCCTGTGTCAGAGTATAGCAGTGAGACCT  2290
            ||||||.||.||||||||||||||.||.|||||||||||||||||.|||||||||||.||.||||||||.||||
Sbjct  957  CAAAGCTATCCCCCAGTTTTGCTTTCCGGATGCCAAGGACTGGCTCCCTGTGTCAGAATACAGCAGTGAAACCT  1030

Query 2291  TTTCTTTCATGCTGACTGGGGAAGATGGCGGCAGACGCTTTGGCTACTGCAGGCGCTTACTGCCAAGTGGGAAA  2364
            |||||||||||||||||||||||||||||.||||.|||||||||||.||.||||||||||||||||||||||||
Sbjct 1031  TTTCTTTCATGCTGACTGGGGAAGATGGCAGCAGGCGCTTTGGCTATTGTAGGCGCTTACTGCCAAGTGGGAAA  1104

Query 2365  GGGCCCCGGTTGCCAGAGGTGTACTGTGTCATCAGCCGCCTTGGCTGCTTCGGCTTGTTTTCCAAGGTCCTAGA  2438
            |||||.|||||||||||||||||||||||||||||||||||.|||||||||||.||||||||||||||||||||
Sbjct 1105  GGGCCTCGGTTGCCAGAGGTGTACTGTGTCATCAGCCGCCTAGGCTGCTTCGGTTTGTTTTCCAAGGTCCTAGA  1178

Query 2439  TGAGGTGGAGCGCCGGCGTGGGATCTCCGCTGCATTGGTCTATCCTTTCATGAGAAGTCTCATGGAGTCGCCCT  2512
            |||||||||||||||||||||||||||.||||||.|||||||.||.||||||||||||||||||||.|||||||
Sbjct 1179  TGAGGTGGAGCGCCGGCGTGGGATCTCAGCTGCACTGGTCTACCCCTTCATGAGAAGTCTCATGGAATCGCCCT  1252

Query 2513  TCCCAGCCCCAGGGAAGACCATCAAAGTGAAGACATTCCTGCCAGGTGCTGGCAATGAGGTGTTAGAGCTGCGG  2586
            |.||||||||||||||.||||||||||||||||||||.||.||.||.||||||||||||||||||||||||||.
Sbjct 1253  TTCCAGCCCCAGGGAAAACCATCAAAGTGAAGACATTTCTTCCCGGCGCTGGCAATGAGGTGTTAGAGCTGCGT  1326

Query 2587  CGGCCCATGGACTCAAGGCTGGAGCACGTGGACTTTGAGTGCCTTTTTACCTGCCTCAGTGTGCGCCAGCTCAT  2660
            |||||.||||||||..|.||||||||||||||||||||||||||.||.|||||||||||||||||.|||||.||
Sbjct 1327  CGGCCTATGGACTCCCGCCTGGAGCACGTGGACTTTGAGTGCCTCTTCACCTGCCTCAGTGTGCGTCAGCTTAT  1400

Query 2661  CCGAATCTTTGCCTCACTGCTGCTGGAGCGCCGGGTCATTTTTGTGGCAGATAAGCTCAGTACCCTCTCCAGCT  2734
            ||||||||||||||||.|||||.||||.|||.|.|||||||||||.||||||||||||||||||||.|||||||
Sbjct 1401  CCGAATCTTTGCCTCATTGCTGTTGGAACGCAGAGTCATTTTTGTAGCAGATAAGCTCAGTACCCTGTCCAGCT  1474

Query 2735  GCTCCCACGCGGTGGTGGCCTTGCTCTACCCCTTCTCCTGGCAGCACACCTTCATTCCTGTCCTCCCGGCCTCC  2808
            ||||.||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||.||||||
Sbjct 1475  GCTCTCACGCGGTGGTGGCCTTGCTCTACCCCTTCTCCTGGCAGCACACATTCATTCCTGTCCTCCCAGCCTCC  1548

Query 2809  ATGATTGACATCGTCTGCTGTCCCACCCCCTTCCTGGTTGGCCTGCTCTCCAGCTCCCTCCCCAAACTGAAGGA  2882
            |||||||||||.|||||||||||||||||.|||||||||||||||||||||||||||||.||||||||||||||
Sbjct 1549  ATGATTGACATTGTCTGCTGTCCCACCCCTTTCCTGGTTGGCCTGCTCTCCAGCTCCCTTCCCAAACTGAAGGA  1622

Query 2883  GCTGCCTGTGGAGGAGGCGCTGATGGTGAATCTGGGATCTGACCGATTCATCCGACAGATGGACGACGAAGACA  2956
            ||||||||||||.|||||.||||||||||||||||||||||||||||||||||||||||||||||||||.||||
Sbjct 1623  GCTGCCTGTGGAAGAGGCACTGATGGTGAATCTGGGATCTGACCGATTCATCCGACAGATGGACGACGAGGACA  1696

Query 2957  CGTTGTTACCTAGGAAGTTACAGGCAGCTCTGGAGCAGGCTCTGGAGAGGAAGAATGAGCTGATCTCCCAGGAC  3030
            |..||||||||||.|||||.||.||.||||||||||||||||||||||||||||.||||||.||||||||||||
Sbjct 1697  CACTGTTACCTAGAAAGTTGCAAGCTGCTCTGGAGCAGGCTCTGGAGAGGAAGAGTGAGCTCATCTCCCAGGAC  1770

Query 3031  TCTGACAGCGACTCCGACGATGAATGTAATACCCTCAATGGGCTGGTGTCGGAGGTGTTTATCCGGTTCTTTGT  3104
            ||||||||.|||||.||.|||||||||||||||||||||||.||.|||||.|||||||||||||||||||||||
Sbjct 1771  TCTGACAGTGACTCTGATGATGAATGTAATACCCTCAATGGACTTGTGTCAGAGGTGTTTATCCGGTTCTTTGT  1844

Query 3105  GGAGACCGTTGGGCACTACTCCCTCTTTCTGACACAGAGTGAGAAGGGAGAGAGGGCCTTTCAGCGAGAGGCCT  3178
            ||||||.||.||.||||||||||||||.||||||||.|||||||||||.||.|||||.||||||||||||||||
Sbjct 1845  GGAGACTGTGGGTCACTACTCCCTCTTCCTGACACACAGTGAGAAGGGGGAAAGGGCTTTTCAGCGAGAGGCCT  1918

Query 3179  TCCGCAAATCTGTGGCCTCCAAAAGCATCCGCCGCTTTCTTGAGGTTTTTATGGAGTCTCAGATGTTTGCTGGC  3252
            |||||||.|||||||||||||||||.||||||||.||||||||.|||||||||||.||||||||||||||||||
Sbjct 1919  TCCGCAAGTCTGTGGCCTCCAAAAGTATCCGCCGTTTTCTTGAAGTTTTTATGGAATCTCAGATGTTTGCTGGC  1992

Query 3253  TTCATCCAAGACAGGGAGCTAAGAAAGTGTCGGGCAAAGGGCCTTTTTGAGCAGCGAGTGGAGCAGTACTTAGA  3326
            |||||||||||||||||||||||.||||||||.||.||||||||.|||||||||.|||||||.|||||..||||
Sbjct 1993  TTCATCCAAGACAGGGAGCTAAGGAAGTGTCGAGCCAAGGGCCTCTTTGAGCAGAGAGTGGAACAGTATCTAGA  2066

Query 3327  AGAACTCCCAGACACTGAGCAGAGTGGAATGAATAAGTTTCTCCGAGGTTTGGGCAACAAAATGAAGTTTCTCC  3400
            |||.|||||.||||||||||||||.||.|||||.|||||||||||.||..||||||||||.||||||||.||||
Sbjct 2067  AGAGCTCCCTGACACTGAGCAGAGCGGGATGAACAAGTTTCTCCGGGGCCTGGGCAACAAGATGAAGTTCCTCC  2140

Query 3401  ACAAGAAGAAT  3411
            |||||||||||
Sbjct 2141  ACAAGAAGAAT  2151

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