Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_07005
- Subject:
- XR_002957181.1
- Aligned Length:
- 5066
- Identities:
- 2247
- Gaps:
- 2762
Alignment
Query 1 ATGGCCATGACTGCCAACAAGAATTCCAGCATCACCCACGGAGCTGGTGGCACTAAAGCCCCTCGGGGGACTCT 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 GAGCAGGTCTCAGTCAGTCTCTCCACCTCCAGTTCTCTCCCCACCAAGGAGTCCCATCTACCCGCTCAGTGATA 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 GTGAAACCTCAGCCTGCAGGTACCCCAGCCACTCCAGCTCCCGGGTGCTCCTCAAGGACCGGCACCCCCCAGCT 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 CCTTCACCCCAGAATCCTCAAGATCCCTCCCCAGATACTTCCCCACCCACCTGTCCCTTCAAGACCGCCAGCTT 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 CGGTTATTTGGACAGAAGCCCTTCGGCGTGCAAGAGAGACGCCCAAAAGGAAAGTGTCCAAGGCGCAGCCCAGG 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 ATGTAGCAGGGGTCGCTGCCTGCCTCCCCCTTGCCCAGAGCACGCCATTCCCGGGGCCAGCAGCTGGCCCCCGG 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 GGCGTCTTGCTGACCCGTACCGGTACCCGCGCCCACAGCCTGGGCATCCGGGAGAAGATATCAGCATGGGAAGG 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 TCGCCGAGAGGCGTCGCCCAGGATGAGCATGTGTGGAGAGAAGCGGGAGGGCTCTGGGAGCGAGTGGGCGGCCA 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 GTGAGGGCTGCCCCAGCCTGGGCTGTCCCAGCGTGGTGCCGTCCCCCTGCAGCTCTGAAAAGACCTTTGATTTC 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 AAGGGCCTCCGGAGGATGAGCAGGACCTTCTCCGAGTGTTCCTACCCAGAGACTGAGGAGGAGGGAGAGGCGCT 740
Sbjct 1 -------------------------------------------------------------------------- 0
Query 741 CCCTGTCCGGGACTCTTTCTACCGGCTGGAGAAACGGCTGGGCCGGAGTGAGCCCAGCGCCTTCCTCAGGGGGC 814
Sbjct 1 -------------------------------------------------------------------------- 0
Query 815 ATGGCAGCAGGAAGGAGAGCTCAGCAGTGCTGAGCCGGATCCAGAAAATTGAACAGGTCCTGAAGGAGCAGCCG 888
Sbjct 1 -------------------------------------------------------------------------- 0
Query 889 GGCCGGGGGCTCCCCCAGCTCCCCAGCAGCTGCTACAGCGTGGACCGGGGGAAAAGGAACACTGGAACCTTGGG 962
||||.|||| ||.|| ||||.| ||| ||..|||.|
Sbjct 1 ---------------CAGCACCCC--CACCT--------------------AAAATG-ACA----AAAGTTGAG 32
Query 963 CTCCTTGGAGGAGCCGGCAGGGGGCGCGAGTGTGAGCGCTGGCAGCCGGGCAGTCG--GAGTG--------GCT 1026
||| ||||| ||.|....||||.| .|.|| |||
Sbjct 33 -TCC--------------------------TGTGA-------CATCACAACAGTTGACTATTGTATCAACAGCT 72
Query 1027 GGTGTTGCGGGGGAGGCGGGCCCACCCCCAGAG------------AGGGAAGGCAGTGGTTCCACTAAGCCCGG 1088
|||.|| .||||..||||| |.||||| |.||| ||...||
Sbjct 73 -GTGATG--------------TCACCAACAGAGGATTATGACTTCAAGGAAG--AATGG--------AGGTGGG 121
Query 1089 GACCCCTGGAAATAGC-CCTAGCTCCCAGCGGCTGCCATCGAAGAGTTCCCTCGATCCCGCTGTGAACCCTGTC 1161
|| |.||||| ||| |||| |.|||..||.|||
Sbjct 122 --------------GCGCATAGCT------GGC--------AAGA---------AACCCCGTGGGAA------- 151
Query 1162 CCCAAACCCAAGCGCAC---CTTTGAATACGAG-GCTGACAAGAACCCCAAGAGTAAGCC--CAGTAATGGTCT 1229
|||| .|||.||.| .||||.| ||| ||.||.|.|| |||.||.| ||| ||..|| |
Sbjct 152 --CAAA--GAAGGGCTCTGGGTTTGCA---GAGAGCCGAAATGA---CCATGACT--GCCAACAAGAA-----T 208
Query 1230 ACCTCCTTCACCCAC--ACCTGCTGCTCCACCTCCCTTGCCCTCCACCCCAGCCCCGCCAGTCACCCGGAGACC 1301
.||..|.|||||||| |.|||.|| ||.||..|.||| |.|||.|
Sbjct 209 TCCAGCATCACCCACGGAGCTGGTG-------------GCACTAAAGCCC--------------CTCGGGG--- 252
Query 1302 CAAGAAGGACATGCGTGGTCACCGCAAGTCCCAGAGCAGAAAATCCTTTGAGTTTGAGGATGCATCCAGTCTCC 1375
|.|.|.|||||||||||||||||||||||||||||||||||||||||
Sbjct 253 ---------------------------GACTCTGAGCAGAAAATCCTTTGAGTTTGAGGATGCATCCAGTCTCC 299
Query 1376 AGTCCCTGTACCCCTCTTCTCCCACTGAGAATGGTACTGAGAACCAACCCAAGTTTGGATCCAAAAGCACTTTA 1449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AGTCCCTGTACCCCTCTTCTCCCACTGAGAATGGTACTGAGAACCAACCCAAGTTTGGATCCAAAAGCACTTTA 373
Query 1450 GAAGAAAATGCCTATGAAGATATTGTGGGAGATCTGCCCAAGGAGAATCCATATGAGGATGTGGACTTAAAGAG 1523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 GAAGAAAATGCCTATGAAGATATTGTGGGAGATCTGCCCAAGGAGAATCCATATGAGGATGTGGACTTAAAGAG 447
Query 1524 CCGAAGAGCAGGACGAAAATCCCAGCAACTGTCTGAGAACTCCTTGGACTCTTTGCACAGGATGTGGAGTCCTC 1597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 CCGAAGAGCAGGACGAAAATCCCAGCAACTGTCTGAGAACTCCTTGGACTCTTTGCACAGGATGTGGAGTCCTC 521
Query 1598 AGGACAGGAAGTACAACAGCCCGCCCACACAGCTTTCCCTGAAACCCAACAGCCAGTCCCTGCGCAGTGGGAAC 1671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 AGGACAGGAAGTACAACAGCCCGCCCACACAGCTTTCCCTGAAACCCAACAGCCAGTCCCTGCGCAGTGGGAAC 595
Query 1672 TGGTCAGAAAGGAAGAGCCACCGGCTGCCACGATTACCCAAGAGGCACAGCCATGACGACATGCTGCTGCTGGC 1745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TGGTCAGAAAGGAAGAGCCACCGGCTGCCACGATTACCCAAGAGGCACAGCCATGACGACATGCTGCTGCTGGC 669
Query 1746 TCAGCTGAGTCTGCCGTCCTCACCCTCCAGCCTCAATGAAGACAGCCTCAGCACCACCAGCGAGCTGCTGTCCA 1819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 TCAGCTGAGTCTGCCGTCCTCACCCTCCAGCCTCAATGAAGACAGCCTCAGCACCACCAGCGAGCTGCTGTCCA 743
Query 1820 GCCGCCGGGCCCGCCGCATTCCCAAGCTTGTCCAAAGAACTAACTCCATCTACAATGCCAAGAGAGGAAAGAAG 1893
|||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||
Sbjct 744 GCCGCCGGGCCCGCCGCATTCCCAAGCTTGTCCAAAGAATTAACTCCATCTACAATGCCAAGAGAGGAAAGAAG 817
Query 1894 AGATTAAAAAAGTTGTCTATGTCCAGCATTGAAACAGCATCACTGAGAGATGAAAACAGTGAGAGCGAGAGCGA 1967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 AGATTAAAAAAGTTGTCTATGTCCAGCATTGAAACAGCATCACTGAGAGATGAAAACAGTGAGAGCGAGAGCGA 891
Query 1968 CTCTGATGACAGGTTCAAAGCCCACACACAGCGCCTGGTCCACATCCAGTCGATGCTGAAGCGCGCCCCCAGCT 2041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 CTCTGATGACAGGTTCAAAGCCCACACACAGCGCCTGGTCCACATCCAGTCGATGCTGAAGCGCGCCCCCAGCT 965
Query 2042 ATCGCACGCTGGAGCTGGAGCTGCTGGAGTGGCAGGAGCGGGAGCTTTTTGAGTACTTTGTGGTGGTGTCCCTC 2115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 ATCGCACGCTGGAGCTGGAGCTGCTGGAGTGGCAGGAGCGGGAGCTTTTTGAGTACTTTGTGGTGGTGTCCCTC 1039
Query 2116 AAGAAGAAGCCATCGCGAAACACCTACCTCCCCGAAGTCTCCTACCAGTTTCCCAAGCTGGACCGACCCACCAA 2189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 AAGAAGAAGCCATCGCGAAACACCTACCTCCCCGAAGTCTCCTACCAGTTTCCCAAGCTGGACCGACCCACCAA 1113
Query 2190 GCAGATGCGAGAGGCAGAGGAAAGGCTCAAAGCCATTCCCCAGTTTTGCTTCCCTGATGCCAAGGACTGGCTTC 2263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 GCAGATGCGAGAGGCAGAGGAAAGGCTCAAAGCCATTCCCCAGTTTTGCTTCCCTGATGCCAAGGACTGGCTTC 1187
Query 2264 CTGTGTCAGAGTATAGCAGTGAGACCTTTTCTTTCATGCTGACTGGGGAAGATGGCGGCAGACGCTTTGGCTAC 2337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct 1188 CTGTGTCAGAGTATAGCAGTGAGACCTTTTCTTTCATGCTGACTGGGGAAGATGGCAGCAGACGCTTTGGCTAC 1261
Query 2338 TGCAGGCGCTTACTGCCAAGTGGGAAAGGGCCCCGGTTGCCAGAGGTGTACTGTGTCATCAGCCGCCTTGGCTG 2411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 TGCAGGCGCTTACTGCCAAGTGGGAAAGGGCCCCGGTTGCCAGAGGTGTACTGTGTCATCAGCCGCCTTGGCTG 1335
Query 2412 CTTCGGCTTGTTTTCCAAGGTCCTAGATGAGGTGGAGCGCCGGCGTGGGATCTCCGCTGCATTGGTCTATCCTT 2485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 CTTCGGCTTGTTTTCCAAGGTCCTAGATGAGGTGGAGCGCCGGCGTGGGATCTCCGCTGCATTGGTCTATCCTT 1409
Query 2486 TCATGAGAAGTCTCATGGAGTCGCCCTTCCCAGCCCCAGGGAAGACCATCAAAGTGAAGACATTCCTGCCAGGT 2559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1410 TCATGAGAAGTCTCATGGAGTCGCCCTTCCCAGCCCCAGGGAAGACCATCAAAGTGAAGACATTCCTGCCAGGT 1483
Query 2560 GCTGGCAATGAGGTGTTAGAGCTGCGGCGGCCCATGGACTCAAGGCTGGAGCACGTGGACTTTGAGTGCCTTTT 2633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1484 GCTGGCAATGAGGTGTTAGAGCTGCGGCGGCCCATGGACTCAAGGCTGGAGCACGTGGACTTTGAGTGCCTTTT 1557
Query 2634 TACCTGCCTCAGTGTGCGCCAGCTCATCCGAATCTTTGCCTCACTGCTGCTGGAGCGCCGGGTCATTTTTGTGG 2707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 TACCTGCCTCAGTGTGCGCCAGCTCATCCGAATCTTTGCCTCACTGCTGCTGGAGCGCCGGGTCATTTTTGTGG 1631
Query 2708 CAGATAAGCTCAGTACCCTCTCCAGCTGCTCCCACGCGGTGGTGGCCTTGCTCTACCCCTTCTCCTGGCAGCAC 2781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1632 CAGATAAGCTCAGTACCCTCTCCAGCTGCTCCCACGCGGTGGTGGCCTTGCTCTACCCCTTCTCCTGGCAGCAC 1705
Query 2782 ACCTTCATTCCTGTCCTCCCGGCCTCCATGATTGACATCGTCTGCTGTCCCACCCCCTTCCTGGTTGGCCTGCT 2855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1706 ACCTTCATTCCTGTCCTCCCGGCCTCCATGATTGACATCGTCTGCTGTCCCACCCCCTTCCTGGTTGGCCTGCT 1779
Query 2856 CTCCAGCTCCCTCCCCAAACTGAAGGAGCTGCCTGTGGAGGAGGCGCTGATGGTGAATCTGGGATCTGACCGAT 2929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1780 CTCCAGCTCCCTCCCCAAACTGAAGGAGCTGCCTGTGGAGGAGGCGCTGATGGTGAATCTGGGATCTGACCGAT 1853
Query 2930 TCATCCGACAGATGGACGACGAAGACACGTTGTTACCTAGGAAGTTACAGGCAGCTCTGGAGCAGGCTCTGGAG 3003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1854 TCATCCGACAGATGGACGACGAAGACACGTTGTTACCTAGGAAGTTACAGGCAGCTCTGGAGCAGGCTCTGGAG 1927
Query 3004 AGGAAGAATGAGCTGATCTCCCAGGACTCTGACAGCGACTCCGACGATGAATGTAATACCCTCAATGGGCTGGT 3077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1928 AGGAAGAATGAGCTGATCTCCCAGGACTCTGACAGCGACTCCGACGATGAATGTAATACCCTCAATGGGCTGGT 2001
Query 3078 GTCGGAGGTGTTTATCCGGTTCTTTGTGGAGACCGTTGGGCACTACTCCCTCTTTCTGACACAGAGTGAGAAGG 3151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2002 GTCGGAGGTGTTTATCCGGTTCTTTGTGGAGACCGTTGGGCACTACTCCCTCTTTCTGACACAGAGTGAGAAGG 2075
Query 3152 GAGAGAGGGCCTTTCAGCGAGAGGCCTTCCGCAAATCTGTGGCCTCCAAAAGCATCCGCCGCTTTCTTGAGGTT 3225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2076 GAGAGAGGGCCTTTCAGCGAGAGGCCTTCCGCAAATCTGTGGCCTCCAAAAGCATCCGCCGCTTTCTTGAGGTT 2149
Query 3226 TTTATGGAGTCTCAGATGTTTGCTGGCTTCATCCAAGACAGGGAGCTAAGAAAGTGTCGGGCAAAG-------- 3291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2150 TTTATGGAGTCTCAGATGTTTGCTGGCTTCATCCAAGACAGGGAGCTAAGAAAGTGTCGGGCAAAGGGTAAGTC 2223
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 2224 TTGGTTATCAGCTCTCTTCTCTAATTTTTTCACCCACAGCAGGGCTGAAGAACCAGGCACTATGATGGAAGCTC 2297
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 2298 TTGGACATCAGCTAGGGCCAGGCCTCTTAACATCCCTTTACCTCTGTTAGAAACTTCAAGGTAGCATTCTTCTC 2371
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 2372 CTCCGGCCCCAGTAAATGCCTTCACAAGGCTATGCACAAGCTAAGCCACATGGCTAGAGGTAGGACTCATCTCC 2445
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 2446 ACCTAGGAGCAGCATGCCATTGGTTGCCCACCCCCTCCTCAAAGAGAAAGATAGGAGAAAGCCCTTCTATCCAG 2519
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 2520 AGAAAAGGAGCAGACTGAGCAATTTCGGGGGTTCTGAGAACCCAGTGGTTGGGAATTCCCTTACAGAGCATTGG 2593
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 2594 GCCAGCTGTCGTAGGTTGGTGGCAGTCTTCATTTAAGGCAGATGGTTATCTTGTTTTTTGCTATTTCATCAGCT 2667
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 2668 CATTCGAGGGCTTTTTCATCTCATCACAATTTTTCTGTCTAACCTCAGGGTTAGTACTTCTTCTGTCCTCTAAT 2741
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 2742 ACTATCCATTTAGTATAACAACCTTTTTGGAACAACATGGTAGAGTTGTCTGAAGGAAGCTAGAGATGTCCACT 2815
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 2816 TGGGGCAGCTCTGAACTGAGAAGCAGCCTCCTCACCTAGTGCAGCTTGGGAATGTGCATGGGGAGGCAGGGTGG 2889
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 2890 CAGCAGCAAACCCCGGCAAGATGTCACTAATGATCGCCTTGATGAGCCAGCCCGAATTCTAGTAAGATGCTCCT 2963
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 2964 GCAAATTATCATCCCAGATGTTTTCTTTCTCCTTTTTTGGCATCTGTGCTCCATGGTTCCCTTCATGTAGGCCT 3037
Query 3292 -------------------------------------------------------GGCCTTTTTGAGCAGCGAG 3310
|||||||||||||||||||
Sbjct 3038 CTCCTTCCCTTCCTCCAATGACTGTTCTCTTCCCTGTGCCTGTTTCTTTTACCCAGGCCTTTTTGAGCAGCGAG 3111
Query 3311 TGGAGCAGTACTTAGAAGAACTCCCAGACACTGAGCAGAGTGGAATGAATAAGTTTCTCCGAGGTTTGGGCAAC 3384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3112 TGGAGCAGTACTTAGAAGAACTCCCAGACACTGAGCAGAGTGGAATGAATAAGTTTCTCCGAGGTTTGGGCAAC 3185
Query 3385 AAAATGAAGTTTCTCCACAAGAAGAAT----------------------------------------------- 3411
|||||||||||||||||||||||||||
Sbjct 3186 AAAATGAAGTTTCTCCACAAGAAGAATTAAGCCTCCTTCTCAGTAGCAGAGTCCAGTGCCTTGCAGAGCCTGAA 3259
Query 3412 -------------------------------------------------------------------------- 3411
Sbjct 3260 GCCTGGGGAGAAGGCCCAGCCTGGGACCCTCTGGGCTGCTGTGGCTCCTCTGCCCCCACAGATCCTATCCTCCA 3333
Query 3412 -------------------------------------------------------------------------- 3411
Sbjct 3334 AGCCAGCCCACCTCTGCCTTCATCATATCCCAGGATACTGTTTGTAAATAATCTGCTGTAAGCTTTCTTAACTG 3407
Query 3412 -------------------------------------------------------------------------- 3411
Sbjct 3408 TTTTTTGTAACAAGCAAAGAGAATATGGCAAATATTTGTATATTCCCAAGGGGCCGGGTGCTTTCCTGTCCTGC 3481
Query 3412 -------------------------------------------------------------------------- 3411
Sbjct 3482 CAGAGCATGGATGAAGTTTCGCTGGGTGCTCGTGACTGGCCAGTTTTGTGCAGCTGACTGTCTCAGCCAAACCA 3555
Query 3412 -------------------------------------------------------------------------- 3411
Sbjct 3556 CTGATCTTCCCTGGAGGCCTTCGGCCTGCCTGCCTGCCTGAGGTCCCCGCTGCCAGTCCCGGGCCCTGGAGAGC 3629
Query 3412 -------------------------------------------------------------------------- 3411
Sbjct 3630 AGATGCTGTCTTGTTATGTACAGGAGGACCTTTTAAAAAAATCAAGTTTCTATTTTTTGCTGGTAGTCCGCATA 3703
Query 3412 -------------------------------------------------------------------------- 3411
Sbjct 3704 CCCATACCCTCTGTTTTTGAAAGGCAAAGGCCAATCAGTCCCCATTTGTAGCATGGCACCAGGGTCTTAGGCCT 3777
Query 3412 -------------------------------------------------------------------------- 3411
Sbjct 3778 AGTCCTCTCATTCCTCCCACCCTCCGAGATGGTCAGTGTGTCATGGGAAGCCCACCCCCAGCTCTGCCAGTGCT 3851
Query 3412 -------------------------------------------------------------------------- 3411
Sbjct 3852 CTCTGGGCCTGGCTCCCAGTCAGTGGTGGCCACGATGCGGTACAGGGCATCCCTCCTTCCCATCTACGGGTGTT 3925
Query 3412 ---------------------------------- 3411
Sbjct 3926 CTCAATAAACAATGTACAGTTGTTTGGGCCCAGA 3959