Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_07005
- Subject:
- XR_002957186.1
- Aligned Length:
- 5101
- Identities:
- 2238
- Gaps:
- 2807
Alignment
Query 1 ATGGCCATGACTGCCAACAAGAATTCCAGCATCACCCACGGAGCTGGTGGCACTAAAGCCCCTCGGGGGACTCT 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 GAGCAGGTCTCAGTCAGTCTCTCCACCTCCAGTTCTCTCCCCACCAAGGAGTCCCATCTACCCGCTCAGTGATA 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 GTGAAACCTCAGCCTGCAGGTACCCCAGCCACTCCAGCTCCCGGGTGCTCCTCAAGGACCGGCACCCCCCAGCT 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 CCTTCACCCCAGAATCCTCAAGATCCCTCCCCAGATACTTCCCCACCCACCTGTCCCTTCAAGACCGCCAGCTT 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 CGGTTATTTGGACAGAAGCCCTTCGGCGTGCAAGAGAGACGCCCAAAAGGAAAGTGTCCAAGGCGCAGCCCAGG 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 ATGTAGCAGGGGTCGCTGCCTGCCTCCCCCTTGCCCAGAGCACGCCATTCCCGGGGCCAGCAGCTGGCCCCCGG 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 GGCGTCTTGCTGACCCGTACCGGTACCCGCGCCCACAGCCTGGGCATCCGGGAGAAGATATCAGCATGGGAAGG 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 TCGCCGAGAGGCGTCGCCCAGGATGAGCATGTGTGGAGAGAAGCGGGAGGGCTCTGGGAGCGAGTGGGCGGCCA 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 GTGAGGGCTGCCCCAGCCTGGGCTGTCCCAGCGTGGTGCCGTCCCCCTGCAGCTCTGAAAAGACCTTTGATTTC 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 AAGGGCCTCCGGAGGATGAGCAGGACCTTCTCCGAGTGTTCCTACCCAGAGACTGAGGAGGAGGGAGAGGCGCT 740
Sbjct 1 -------------------------------------------------------------------------- 0
Query 741 CCCTGTCCGGGACTCTTTCTACCGGCTGGAGAAACGGCTGGGCCGGAGTGAGCCCAGCGCCTTCCTCAGGGGGC 814
Sbjct 1 -------------------------------------------------------------------------- 0
Query 815 ATGGCAGCAGGAAGGAGAGCTCAGCAGTGCTGAGCCGGATCCAGAAAATTGAACAGGT---CCTGAAGGAGCAG 885
|.||| .|||||| .||||||| |
Sbjct 1 ------------------------------------------ATAAA----GACAGGTAGGGCTGAAGG----G 24
Query 886 CCGGGCCGGGGGCTCCCCCAGCTCCCCAGCAGCTG-CTACAGCGTGGACCGGGGGAAAAGGAACACTGGAACCT 958
..|.|...|||.|| |||||| ||||.|| | |.||||.| |||
Sbjct 25 TGGAGGTAGGGTCT---CCAGCT-----GCAGTTGTC---------------------AAGAACCC---AAC-- 64
Query 959 TGGGCTCCTTGGAGGAGCCGGCAGGGGGCGCGAGTGTGAGCGCTGGCAGCCGGGCAGTCGGAGTGGCTGGTGTT 1032
||||..||||.|.| || |.|||...|||.||.|
Sbjct 65 -----------------------------------GTGAAGGCTGACTG------AG-CAGAGAAACTGCTGCT 96
Query 1033 GCGGGGGAGGCGGGCCCACCCCCAGAGAGGGAAGGCAGTGGTTCCACTAAGCCCGGGACCCCTGGAAATAGCCC 1106
| ||||||.| |||.|||.|..|..||.| ||| |.||||
Sbjct 97 G-------------------CCCAGAAA--GAAAGCACTTTTAGCAGT------GGG--CTCTGG--------- 132
Query 1107 TAGCTCCCAGCGGCTGCCATCGAAGAGTTCCCTCGATCCCGCTGTGAACCCTGTCCCCAAACCCAAGCGCACCT 1180
|.|..||| |||| ||.|||
Sbjct 133 --GTTTGCAG-------------AGAG----------------------------CCGAAA------------- 150
Query 1181 TTGAATACGAGGCTGACAAGAACCCCAAGAGTAAGCCCAGTAATGGTCTACCTCCTTCACCCAC--ACCTGCTG 1252
|||..|.|| |||.||| |||| ||..|||| |.|||||||| |.|||.||
Sbjct 151 -TGACCATGA--CTGCCAA------CAAG---AATTCCAG--------------CATCACCCACGGAGCTGGTG 198
Query 1253 CTCCACCTCCCTTGCCCTCCACCCCAGCCCCGCCAGTCACCCGGAGACCCAAGAAGGACATGCGTGGTCACCGC 1326
||.||..|.||| |.|||.|
Sbjct 199 -------------GCACTAAAGCCC--------------CTCGGGG---------------------------- 217
Query 1327 AAGTCCCAGAGCAGAAAATCCTTTGAGTTTGAGGATGCATCCAGTCTCCAGTCCCTGTACCCCTCTTCTCCCAC 1400
|.|.|.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 --GACTCTGAGCAGAAAATCCTTTGAGTTTGAGGATGCATCCAGTCTCCAGTCCCTGTACCCCTCTTCTCCCAC 289
Query 1401 TGAGAATGGTACTGAGAACCAACCCAAGTTTGGATCCAAAAGCACTTTAGAAGAAAATGCCTATGAAGATATTG 1474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 TGAGAATGGTACTGAGAACCAACCCAAGTTTGGATCCAAAAGCACTTTAGAAGAAAATGCCTATGAAGATATTG 363
Query 1475 TGGGAGATCTGCCCAAGGAGAATCCATATGAGGATGTGGACTTAAAGAGCCGAAGAGCAGGACGAAAATCCCAG 1548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 TGGGAGATCTGCCCAAGGAGAATCCATATGAGGATGTGGACTTAAAGAGCCGAAGAGCAGGACGAAAATCCCAG 437
Query 1549 CAACTGTCTGAGAACTCCTTGGACTCTTTGCACAGGATGTGGAGTCCTCAGGACAGGAAGTACAACAGCCCGCC 1622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 CAACTGTCTGAGAACTCCTTGGACTCTTTGCACAGGATGTGGAGTCCTCAGGACAGGAAGTACAACAGCCCGCC 511
Query 1623 CACACAGCTTTCCCTGAAACCCAACAGCCAGTCCCTGCGCAGTGGGAACTGGTCAGAAAGGAAGAGCCACCGGC 1696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 CACACAGCTTTCCCTGAAACCCAACAGCCAGTCCCTGCGCAGTGGGAACTGGTCAGAAAGGAAGAGCCACCGGC 585
Query 1697 TGCCACGATTACCCAAGAGGCACAGCCATGACGACATGCTGCTGCTGGCTCAGCTGAGTCTGCCGTCCTCACCC 1770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 TGCCACGATTACCCAAGAGGCACAGCCATGACGACATGCTGCTGCTGGCTCAGCTGAGTCTGCCGTCCTCACCC 659
Query 1771 TCCAGCCTCAATGAAGACAGCCTCAGCACCACCAGCGAGCTGCTGTCCAGCCGCCGGGCCCGCCGCATTCCCAA 1844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCCAGCCTCAATGAAGACAGCCTCAGCACCACCAGCGAGCTGCTGTCCAGCCGCCGGGCCCGCCGCATTCCCAA 733
Query 1845 GCTTGTCCAAAGAACTAACTCCATCTACAATGCCAAGAGAGGAAAGAAGAGATTAAAAAAGTTGTCTATGTCCA 1918
||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 GCTTGTCCAAAGAATTAACTCCATCTACAATGCCAAGAGAGGAAAGAAGAGATTAAAAAAGTTGTCTATGTCCA 807
Query 1919 GCATTGAAACAGCATCACTGAGAGATGAAAACAGTGAGAGCGAGAGCGACTCTGATGACAGGTTCAAAGCCCAC 1992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 GCATTGAAACAGCATCACTGAGAGATGAAAACAGTGAGAGCGAGAGCGACTCTGATGACAGGTTCAAAGCCCAC 881
Query 1993 ACACAGCGCCTGGTCCACATCCAGTCGATGCTGAAGCGCGCCCCCAGCTATCGCACGCTGGAGCTGGAGCTGCT 2066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 ACACAGCGCCTGGTCCACATCCAGTCGATGCTGAAGCGCGCCCCCAGCTATCGCACGCTGGAGCTGGAGCTGCT 955
Query 2067 GGAGTGGCAGGAGCGGGAGCTTTTTGAGTACTTTGTGGTGGTGTCCCTCAAGAAGAAGCCATCGCGAAACACCT 2140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GGAGTGGCAGGAGCGGGAGCTTTTTGAGTACTTTGTGGTGGTGTCCCTCAAGAAGAAGCCATCGCGAAACACCT 1029
Query 2141 ACCTCCCCGAAGTCTCCTACCAGTTTCCCAAGCTGGACCGACCCACCAAGCAGATGCGAGAGGCAGAGGAAAGG 2214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 ACCTCCCCGAAGTCTCCTACCAGTTTCCCAAGCTGGACCGACCCACCAAGCAGATGCGAGAGGCAGAGGAAAGG 1103
Query 2215 CTCAAAGCCATTCCCCAGTTTTGCTTCCCTGATGCCAAGGACTGGCTTCCTGTGTCAGAGTATAGCAGTGAGAC 2288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 CTCAAAGCCATTCCCCAGTTTTGCTTCCCTGATGCCAAGGACTGGCTTCCTGTGTCAGAGTATAGCAGTGAGAC 1177
Query 2289 CTTTTCTTTCATGCTGACTGGGGAAGATGGCGGCAGACGCTTTGGCTACTGCAGGCGCTTAC------------ 2350
|||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 1178 CTTTTCTTTCATGCTGACTGGGGAAGATGGCAGCAGACGCTTTGGCTACTGCAGGCGCTTACTGTTTGCTCTCT 1251
Query 2351 ------------------------------------------------TGCCAAGTGGGAAAGGGCCCCGGTTG 2376
||||||||||||||||||||||||||
Sbjct 1252 TAGAATGGAGGTGGATCAAGAAAGGGAGAAAAGAAGCAAAAAAAGGAATGCCAAGTGGGAAAGGGCCCCGGTTG 1325
Query 2377 CCAGAGGTGTACTGTGTCATCAGCCGCCTTGGCTGCTTCGGCTTGTTTTCCAAGGTCCTAGATGAGGTGGAGCG 2450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 CCAGAGGTGTACTGTGTCATCAGCCGCCTTGGCTGCTTCGGCTTGTTTTCCAAGGTCCTAGATGAGGTGGAGCG 1399
Query 2451 CCGGCGTGGGATCTCCGCTGCATTGGTCTATCCTTTCATGAGAAGTCTCATGGAGTCGCCCTTCCCAGCCCCAG 2524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1400 CCGGCGTGGGATCTCCGCTGCATTGGTCTATCCTTTCATGAGAAGTCTCATGGAGTCGCCCTTCCCAGCCCCAG 1473
Query 2525 GGAAGACCATCAAAGTGAAGACATTCCTGCCAGGTGCTGGCAATGAGGTGTTAGAGCTGCGGCGGCCCATGGAC 2598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1474 GGAAGACCATCAAAGTGAAGACATTCCTGCCAGGTGCTGGCAATGAGGTGTTAGAGCTGCGGCGGCCCATGGAC 1547
Query 2599 TCAAGGCTGGAGCACGTGGACTTTGAGTGCCTTTTTACCTGCCTCAGTGTGCGCCAGCTCATCCGAATCTTTGC 2672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 TCAAGGCTGGAGCACGTGGACTTTGAGTGCCTTTTTACCTGCCTCAGTGTGCGCCAGCTCATCCGAATCTTTGC 1621
Query 2673 CTCACTGCTGCTGGAGCGCCGGGTCATTTTTGTGGCAGATAAGCTCAGTACCCTCTCCAGCTGCTCCCACGCGG 2746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1622 CTCACTGCTGCTGGAGCGCCGGGTCATTTTTGTGGCAGATAAGCTCAGTACCCTCTCCAGCTGCTCCCACGCGG 1695
Query 2747 TGGTGGCCTTGCTCTACCCCTTCTCCTGGCAGCACACCTTCATTCCTGTCCTCCCGGCCTCCATGATTGACATC 2820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1696 TGGTGGCCTTGCTCTACCCCTTCTCCTGGCAGCACACCTTCATTCCTGTCCTCCCGGCCTCCATGATTGACATC 1769
Query 2821 GTCTGCTGTCCCACCCCCTTCCTGGTTGGCCTGCTCTCCAGCTCCCTCCCCAAACTGAAGGAGCTGCCTGTGGA 2894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1770 GTCTGCTGTCCCACCCCCTTCCTGGTTGGCCTGCTCTCCAGCTCCCTCCCCAAACTGAAGGAGCTGCCTGTGGA 1843
Query 2895 GGAGGCGCTGATGGTGAATCTGGGATCTGACCGATTCATCCGACAGATGGACGACGAAGACACGTTGTTACCTA 2968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1844 GGAGGCGCTGATGGTGAATCTGGGATCTGACCGATTCATCCGACAGATGGACGACGAAGACACGTTGTTACCTA 1917
Query 2969 GGAAGTTACAGGCAGCTCTGGAGCAGGCTCTGGAGAGGAAGAATGAGCTGATCTCCCAGGACTCTGACAGCGAC 3042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1918 GGAAGTTACAGGCAGCTCTGGAGCAGGCTCTGGAGAGGAAGAATGAGCTGATCTCCCAGGACTCTGACAGCGAC 1991
Query 3043 TCCGACGATGAATGTAATACCCTCAATGGGCTGGTGTCGGAGGTGTTTATCCGGTTCTTTGTGGAGACCGTTGG 3116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1992 TCCGACGATGAATGTAATACCCTCAATGGGCTGGTGTCGGAGGTGTTTATCCGGTTCTTTGTGGAGACCGTTGG 2065
Query 3117 GCACTACTCCCTCTTTCTGACACAGAGTGAGAAGGGAGAGAGGGCCTTTCAGCGAGAGGCCTTCCGCAAATCTG 3190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2066 GCACTACTCCCTCTTTCTGACACAGAGTGAGAAGGGAGAGAGGGCCTTTCAGCGAGAGGCCTTCCGCAAATCTG 2139
Query 3191 TGGCCTCCAAAAGCATCCGCCGCTTTCTTGAGGTTTTTATGGAGTCTCAGATGTTTGCTGGCTTCATCCAAGAC 3264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2140 TGGCCTCCAAAAGCATCCGCCGCTTTCTTGAGGTTTTTATGGAGTCTCAGATGTTTGCTGGCTTCATCCAAGAC 2213
Query 3265 AGGGAGCTAAGAAAGTGTCGGGCAAAG----------------------------------------------- 3291
|||||||||||||||||||||||||||
Sbjct 2214 AGGGAGCTAAGAAAGTGTCGGGCAAAGGGTAAGTCTTGGTTATCAGCTCTCTTCTCTAATTTTTTCACCCACAG 2287
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 2288 CAGGGCTGAAGAACCAGGCACTATGATGGAAGCTCTTGGACATCAGCTAGGGCCAGGCCTCTTAACATCCCTTT 2361
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 2362 ACCTCTGTTAGAAACTTCAAGGTAGCATTCTTCTCCTCCGGCCCCAGTAAATGCCTTCACAAGGCTATGCACAA 2435
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 2436 GCTAAGCCACATGGCTAGAGGTAGGACTCATCTCCACCTAGGAGCAGCATGCCATTGGTTGCCCACCCCCTCCT 2509
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 2510 CAAAGAGAAAGATAGGAGAAAGCCCTTCTATCCAGAGAAAAGGAGCAGACTGAGCAATTTCGGGGGTTCTGAGA 2583
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 2584 ACCCAGTGGTTGGGAATTCCCTTACAGAGCATTGGGCCAGCTGTCGTAGGTTGGTGGCAGTCTTCATTTAAGGC 2657
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 2658 AGATGGTTATCTTGTTTTTTGCTATTTCATCAGCTCATTCGAGGGCTTTTTCATCTCATCACAATTTTTCTGTC 2731
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 2732 TAACCTCAGGGTTAGTACTTCTTCTGTCCTCTAATACTATCCATTTAGTATAACAACCTTTTTGGAACAACATG 2805
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 2806 GTAGAGTTGTCTGAAGGAAGCTAGAGATGTCCACTTGGGGCAGCTCTGAACTGAGAAGCAGCCTCCTCACCTAG 2879
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 2880 TGCAGCTTGGGAATGTGCATGGGGAGGCAGGGTGGCAGCAGCAAACCCCGGCAAGATGTCACTAATGATCGCCT 2953
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 2954 TGATGAGCCAGCCCGAATTCTAGTAAGATGCTCCTGCAAATTATCATCCCAGATGTTTTCTTTCTCCTTTTTTG 3027
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 3028 GCATCTGTGCTCCATGGTTCCCTTCATGTAGGCCTCTCCTTCCCTTCCTCCAATGACTGTTCTCTTCCCTGTGC 3101
Query 3292 ----------------GGCCTTTTTGAGCAGCGAGTGGAGCAGTACTTAGAAGAACTCCCAGACACTGAGCAGA 3349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3102 CTGTTTCTTTTACCCAGGCCTTTTTGAGCAGCGAGTGGAGCAGTACTTAGAAGAACTCCCAGACACTGAGCAGA 3175
Query 3350 GTGGAATGAATAAGTTTCTCCGAGGTTTGGGCAACAAAATGAAGTTTCTCCACAAGAAGAAT------------ 3411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3176 GTGGAATGAATAAGTTTCTCCGAGGTTTGGGCAACAAAATGAAGTTTCTCCACAAGAAGAATTAAGCCTCCTTC 3249
Query 3412 -------------------------------------------------------------------------- 3411
Sbjct 3250 TCAGTAGCAGAGTCCAGTGCCTTGCAGAGCCTGAAGCCTGGGGAGAAGGCCCAGCCTGGGACCCTCTGGGCTGC 3323
Query 3412 -------------------------------------------------------------------------- 3411
Sbjct 3324 TGTGGCTCCTCTGCCCCCACAGATCCTATCCTCCAAGCCAGCCCACCTCTGCCTTCATCATATCCCAGGATACT 3397
Query 3412 -------------------------------------------------------------------------- 3411
Sbjct 3398 GTTTGTAAATAATCTGCTGTAAGCTTTCTTAACTGTTTTTTGTAACAAGCAAAGAGAATATGGCAAATATTTGT 3471
Query 3412 -------------------------------------------------------------------------- 3411
Sbjct 3472 ATATTCCCAAGGGGCCGGGTGCTTTCCTGTCCTGCCAGAGCATGGATGAAGTTTCGCTGGGTGCTCGTGACTGG 3545
Query 3412 -------------------------------------------------------------------------- 3411
Sbjct 3546 CCAGTTTTGTGCAGCTGACTGTCTCAGCCAAACCACTGATCTTCCCTGGAGGCCTTCGGCCTGCCTGCCTGCCT 3619
Query 3412 -------------------------------------------------------------------------- 3411
Sbjct 3620 GAGGTCCCCGCTGCCAGTCCCGGGCCCTGGAGAGCAGATGCTGTCTTGTTATGTACAGGAGGACCTTTTAAAAA 3693
Query 3412 -------------------------------------------------------------------------- 3411
Sbjct 3694 AATCAAGTTTCTATTTTTTGCTGGTAGTCCGCATACCCATACCCTCTGTTTTTGAAAGGCAAAGGCCAATCAGT 3767
Query 3412 -------------------------------------------------------------------------- 3411
Sbjct 3768 CCCCATTTGTAGCATGGCACCAGGGTCTTAGGCCTAGTCCTCTCATTCCTCCCACCCTCCGAGATGGTCAGTGT 3841
Query 3412 -------------------------------------------------------------------------- 3411
Sbjct 3842 GTCATGGGAAGCCCACCCCCAGCTCTGCCAGTGCTCTCTGGGCCTGGCTCCCAGTCAGTGGTGGCCACGATGCG 3915
Query 3412 --------------------------------------------------------------------- 3411
Sbjct 3916 GTACAGGGCATCCCTCCTTCCCATCTACGGGTGTTCTCAATAAACAATGTACAGTTGTTTGGGCCCAGA 3984