Nucleotide Global Alignment

Description

Query:
ccsbBroad304_07304
Subject:
NR_027140.2
Aligned Length:
3998
Identities:
1126
Gaps:
2871

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGCCTGGACACATAAATCAGCACGCGGCCGGAGAACCCCGCAATCTCTGCGCCCACAAAATACACCGACGATGC  74

Query    1  ---------------------------------------------------------------ATGGAACAACG  11
                                                                           |||||||||||
Sbjct   75  CCGATCTACTTTAAGGGCTGAAACCCACGGGCCTGAGAGACTATAAGAGCGTTCCCTACCGCCATGGAACAACG  148

Query   12  GGGACAGAACGCCCCGGCCGCTTCGGGGGCCCGGAAAAGGCACGGCCCAGGACCCAGGGAGGCGCGGGGAGCCA  85
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GGGACAGAACGCCCCGGCCGCTTCGGGGGCCCGGAAAAGGCACGGCCCAGGACCCAGGGAGGCGCGGGGAGCCA  222

Query   86  GGCCTGGGCTCCGGGTCCCCAAGACCCTTGTGCTCGTTGTCGCCGCGGTCCTGCTGTTGGTCTCAGCTGAGTCT  159
            |||||||||.|||||||||||||||||||||||||||||||||||||||||||||||                 
Sbjct  223  GGCCTGGGCCCCGGGTCCCCAAGACCCTTGTGCTCGTTGTCGCCGCGGTCCTGCTGT-----------------  279

Query  160  GCTCTGATCACCCAACAAGACCTAGCTCCCCAGCAGAGAGCGGCCCCACAACAAAAGAGGTCCAGCCCCTCAGA  233
                                                                                      
Sbjct  280  --------------------------------------------------------------------------  279

Query  234  GGGATTGTGTCCACCTGGACACCATATCTCAGAAGACGGTAGAGATTGCATCTCCTGCAAATATGGACAGGACT  307
                           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  280  ---------------TGGACACCATATCTCAGAAGACGGTAGAGATTGCATCTCCTGCAAATATGGACAGGACT  338

Query  308  ATAGCACTCACTGGAATGACCTCCTTTTCTGCTTGCGCTGCACCAGGTGTGATTCAGGTGAAGTGGAGCTAAGT  381
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  339  ATAGCACTCACTGGAATGACCTCCTTTTCTGCTTGCGCTGCACCAGGTGTGATTCAGGTGAAGTGGAGCTAAGT  412

Query  382  CCCTGCACCACGACCAGAAACACAGTGTGTCAGTGCGAAGAAGGCACCTTCCGGGAAGAAGATTCTCCTGAGAT  455
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  413  CCCTGCACCACGACCAGAAACACAGTGTGTCAGTGCGAAGAAGGCACCTTCCGGGAAGAAGATTCTCCTGAGAT  486

Query  456  GTGCCGGAAGTGCCGCACAGGGTGTCCCAGAGGGATGGTCAAGGTCGGTGATTGTACACCCTGGAGTGACATCG  529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  487  GTGCCGGAAGTGCCGCACAGGGTGTCCCAGAGGGATGGTCAAGGTCGGTGATTGTACACCCTGGAGTGACATCG  560

Query  530  AATGTGTCCACAAAGAATCAGGTACAAAGCACAGTGGGGAAGCCCCAGCTGTGGAGGAGACGGTGACCTCCAGC  603
            |||||||||||||||||                                                         
Sbjct  561  AATGTGTCCACAAAGAA---------------------------------------------------------  577

Query  604  CCAGGGACTCCTGCCTCTCCCTGTTCTCTCTCAGGCATCATCATAGGAGTCACAGTTGCAGCCGTAGTCTTGAT  677
                                          ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  578  ------------------------------TCAGGCATCATCATAGGAGTCACAGTTGCAGCCGTAGTCTTGAT  621

Query  678  TGTGGCTGTGTTTGTTTGCAAGTCTTTACTGTGGAAGAAAGTCCTTCCTTACCTGAAAGGCATCTGCTCAGGTG  751
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  622  TGTGGCTGTGTTTGTTTGCAAGTCTTTACTGTGGAAGAAAGTCCTTCCTTACCTGAAAGGCATCTGCTCAGGTG  695

Query  752  GTGGTGGGGACCCTGAGCGTGTGGACAGAAGCTCACAACGACCTGGGGCTGAGGACAATGTCCTCAATGAGATC  825
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  696  GTGGTGGGGACCCTGAGCGTGTGGACAGAAGCTCACAACGACCTGGGGCTGAGGACAATGTCCTCAATGAGATC  769

Query  826  GTGAGTATCTTGCAGCCCACCCAGGTCCCTGAGCAGGAAATGGAAGTCCAGGAGCCAGCAGAGCCAACAGGTGT  899
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  770  GTGAGTATCTTGCAGCCCACCCAGGTCCCTGAGCAGGAAATGGAAGTCCAGGAGCCAGCAGAGCCAACAGGTGT  843

Query  900  CAACATGTTGTCCCCCGGGGAGTCAGAGCATCTGCTGGAACCGGCAGAAGCTGAAAGGTCTCAGAGGAGGAGGC  973
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  844  CAACATGTTGTCCCCCGGGGAGTCAGAGCATCTGCTGGAACCGGCAGAAGCTGAAAGGTCTCAGAGGAGGAGGC  917

Query  974  TGCTGGTTCCAGCAAATGAAGGTGATCCCACTGAGACTCTGAGACAGTGCTTCGATGACTTTGCAGACTTGGTG  1047
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  918  TGCTGGTTCCAGCAAATGAAGGTGATCCCACTGAGACTCTGAGACAGTGCTTCGATGACTTTGCAGACTTGGTG  991

Query 1048  CCCTTTGACTCCTGGGAGCCGCTCATGAGGAAGTTGGGCCTCATGGACAATGAGATAAAGGTGGCTAAAGCTGA  1121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  992  CCCTTTGACTCCTGGGAGCCGCTCATGAGGAAGTTGGGCCTCATGGACAATGAGATAAAGGTGGCTAAAGCTGA  1065

Query 1122  GGCAGCGGGCCACAGGGACACCTTGTACACGATGCTGATAAAGTGGGTCAACAAAACCGGGCGAGATGCCTCTG  1195
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066  GGCAGCGGGCCACAGGGACACCTTGTACACGATGCTGATAAAGTGGGTCAACAAAACCGGGCGAGATGCCTCTG  1139

Query 1196  TCCACACCCTGCTGGATGCCTTGGAGACGCTGGGAGAGAGACTTGCCAAGCAGAAGATTGAGGACCACTTGTTG  1269
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140  TCCACACCCTGCTGGATGCCTTGGAGACGCTGGGAGAGAGACTTGCCAAGCAGAAGATTGAGGACCACTTGTTG  1213

Query 1270  AGCTCTGGAAAGTTCATGTATCTAGAAGGTAATGCAGACTCTGCCATGTCC-----------------------  1320
            |||||||||||||||||||||||||||||||||||||||||||||||||||                       
Sbjct 1214  AGCTCTGGAAAGTTCATGTATCTAGAAGGTAATGCAGACTCTGCCATGTCCTAAGTGTGATTCTCTTCAGGAAG  1287

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 1288  TCAGACCTTCCCTGGTTTACCTTTTTTCTGGAAAAAGCCCAACTGGACTCCAGTCAGTAGGAAAGTGCCACAAT  1361

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 1362  TGTCACATGACCGGTACTGGAAGAAACTCTCCCATCCAACATCACCCAGTGGATGGAACATCCTGTAACTTTTC  1435

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 1436  ACTGCACTTGGCATTATTTTTATAAGCTGAATGTGATAATAAGGACACTATGGAAATGTCTGGATCATTCCGTT  1509

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 1510  TGTGCGTACTTTGAGATTTGGTTTGGGATGTCATTGTTTTCACAGCACTTTTTTATCCTAATGTAAATGCTTTA  1583

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 1584  TTTATTTATTTGGGCTACATTGTAAGATCCATCTACACAGTCGTTGTCCGACTTCACTTGATACTATATGATAT  1657

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 1658  GAACCTTTTTTGGGTGGGGGGTGCGGGGCAGTTCACTCTGTCTCCCAGGCTGGAGTGCAATGGTGCAATCTTGG  1731

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 1732  CTCACTATAGCCTTGACCTCTCAGGCTCAAGCGATTCTCCCACCTCAGCCATCCAAATAGCTGGGACCACAGGT  1805

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 1806  GTGCACCACCACGCCCGGCTAATTTTTTGTATTTTGTCTAGATATAGGGGCTCTCTATGTTGCTCAGGGTGGTC  1879

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 1880  TCGAATTCCTGGACTCAAGCAGTCTGCCCACCTCAGACTCCCAAAGCGGTGGAATTAGAGGCGTGAGCCCCCAT  1953

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 1954  GCTTGGCCTTACCTTTCTACTTTTATAATTCTGTATGTTATTATTTTATGAACATGAAGAAACTTTAGTAAATG  2027

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 2028  TACTTGTTTACATAGTTATGTGAATAGATTAGATAAACATAAAAGGAGGAGACATACAATGGGGGAAGAAGAAG  2101

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 2102  AAGTCCCCTGTAAGATGTCACTGTCTGGGTTCCAGCCCTCCCTCAGATGTACTTTGGCTTCAATGATTGGCAAC  2175

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 2176  TTCTACAGGGGCCAGTCTTTTGAACTGGACAACCTTACAAGTATATGAGTATTATTTATAGGTAGTTGTTTACA  2249

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 2250  TATGAGTCGGGACCAAAGAGAACTGGATCCACGTGAAGTCCTGTGTGTGGCTGGTCCCTACCTGGGCAGTCTCA  2323

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 2324  TTTGCACCCATAGCCCCCATCTATGGACAGGCTGGGACAGAGGCAGATGGGTTAGATCACACATAACAATAGGG  2397

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 2398  TCTATGTCATATCCCAAGTGAACTTGAGCCCTGTTTGGGCTCAGGAGATAGAAGACAAAATCTGTCTCCCACGT  2471

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 2472  CTGCCATGGCATCAAGGGGGAAGAGTAGATGGTGCTTGAGAATGGTGTGAAATGGTTGCCATCTCAGGAGTAGA  2545

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 2546  TGGCCCGGCTCACTTCTGGTTATCTGTCACCCTGAGCCCATGAGCTGCCTTTTAGGGTACAGATTGCCTACTTG  2619

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 2620  AGGACCTTGGCCGCTCTGTAAGCATCTGACTCATCTCAGAAATGTCAATTCTTAAACACTGTGGCAACAGGACC  2693

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 2694  TAGAATGGCTGACGCATTAAGGTTTTCTTCTTGTGTCCTGTTCTATTATTGTTTTAAGACCTCAGTAACCATTT  2767

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 2768  CAGCCTCTTTCCAGCAAACCCTTCTCCATAGTATTTCAGTCATGGAAGGATCATTTATGCAGGTAGTCATTCCA  2841

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 2842  GGAGTTTTTGGTCTTTTCTGTCTCAAGGCATTGTGTGTTTTGTTCCGGGACTGGTTTGGGTGGGACAAAGTTAG  2915

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 2916  AATTGCCTGAAGATCACACATTCAGACTGTTGTGTCTGTGGAGTTTTAGGAGTGGGGGGTGACCTTTCTGGTCT  2989

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 2990  TTGCACTTCCATCCTCTCCCACTTCCATCTGGCATCCCACGCGTTGTCCCCTGCACTTCTGGAAGGCACAGGGT  3063

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 3064  GCTGCTGCCTCCTGGTCTTTGCCTTTGCTGGGCCTTCTGTGCAGGACGCTCAGCCTCAGGGCTCAGAAGGTGCC  3137

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 3138  AGTCCGGTCCCAGGTCCCTTGTCCCTTCCACAGAGGCCTTCCTAGAAGATGCATCTAGAGTGTCAGCCTTATCA  3211

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 3212  GTGTTTAAGATTTTTCTTTTATTTTTAATTTTTTTGAGACAGAATCTCACTCTCTCGCCCAGGCTGGAGTGCAA  3285

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 3286  CGGTACGATCTTGGCTCAGTGCAACCTCCGCCTCCTGGGTTCAAGCGATTCTCGTGCCTCAGCCTCCGGAGTAG  3359

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 3360  CTGGGATTGCAGGCACCCGCCACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTT  3433

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 3434  GGTCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCTTGGCCTCCGAAAGTGCTGGGATTACAGGCGTG  3507

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 3508  AGCCACCAGCCAGGCCAAGCTATTCTTTTAAAGTAAGCTTCCTGACGACATGAAATAATTGGGGGTTTTGTTGT  3581

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 3582  TTAGTTACATTAGGCTTTGCTATATCCCCAGGCCAAATAGCATGTGACACAGGACAGCCATAGTATAGTGTGTC  3655

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 3656  ACTCGTGGTTGGTGTCCTTTCATGCTTCTGCCCTGTCAAAGGTCCCTATTTGAAATGTGTTATAATACAAACAA  3729

Query 1321  --------------------------------------------------------------------------  1320
                                                                                      
Sbjct 3730  GGAAGCACATTGTGTACAAAATACTTATGTATTTATGAATCCATGACCAAATTAAATATGAAACCTTATATAAA  3803

Query 1321  --  1320
              
Sbjct 3804  AA  3805

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