Nucleotide Global Alignment

Description

Query:
ccsbBroad304_07481
Subject:
NM_001286100.1
Aligned Length:
3190
Identities:
1492
Gaps:
1448

Alignment

Query    1  ATGTTGGTAGGATCCCAGTCTTTTTCGCCTGGAGGGCCCAATGGGATCATTAGAAGCCAGTCCTTTGCGGGTTT  74
            |||.||||.|||||||||||.||.||.|||||.|||||||||||.|||||..|.|||||||||||.||.|||||
Sbjct    1  ATGCTGGTGGGATCCCAGTCCTTCTCTCCTGGCGGGCCCAATGGCATCATCCGGAGCCAGTCCTTCGCAGGTTT  74

Query   75  CAGCGGCCTCCAGGAAAGGCGATCCAGGTGTAACTCCTTCATTGAAAATTCCTCCGCTCTCAAGAAGCCTCAGG  148
            |||.||.||.|||||||||||.|||||||||||||||||||||||||||.||||.|||||||||||||||||||
Sbjct   75  CAGTGGGCTGCAGGAAAGGCGGTCCAGGTGTAACTCCTTCATTGAAAATGCCTCGGCTCTCAAGAAGCCTCAGG  148

Query  149  CCAAACTGAAGAAAATGCACAATTTAGGCCACAAAAACAACAATCCCCCCAAAGAGCCTCAGCCTAAAAGGGTG  222
            ||||.||||||||||||||.|||.|.||.||||||||.|||||..|.|||||.|||||||||||.||.||.|||
Sbjct  149  CCAAGCTGAAGAAAATGCATAATCTTGGACACAAAAATAACAACACTCCCAAGGAGCCTCAGCCGAAGAGAGTG  222

Query  223  GAAGAAGTCTACAGGGCCTTGAAAAATGGACTTGATGAATATCTGGAGGTTCACCAGACGGAGCTGGACAAGTT  296
            ||.||.||||||.||||||||||.||.||.||||||||.||.||||||.||||||||||||||||||||||.||
Sbjct  223  GAGGAGGTCTACCGGGCCTTGAAGAACGGGCTTGATGAGTACCTGGAGTTTCACCAGACGGAGCTGGACAAATT  296

Query  297  GACAGCTCAGTTAAAAGATATGAAAAGAAACTCTCGCCTGGGTGTACTGTATGACCTAGACAAGCAAATTAAAA  370
            |||.|||||.||||||||||||||.||||||||||||||||||||.||||||||||||||||||||||||||||
Sbjct  297  GACTGCTCAATTAAAAGATATGAAGAGAAACTCTCGCCTGGGTGTGCTGTATGACCTAGACAAGCAAATTAAAA  370

Query  371  CAATTGAAAGATACATGAGACGCCTGGAGTTTCATATAAGTAAGGTAGATGAACTCTATGAAGCTTATTGTATC  444
            |.|||||.|||||||||.||||||||||||||||.||.|||||||||||.||.|||||||||||.|||||||||
Sbjct  371  CGATTGAGAGATACATGCGACGCCTGGAGTTTCACATTAGTAAGGTAGACGAGCTCTATGAAGCCTATTGTATC  444

Query  445  CAGCGACGCCTCCAGGATGGTGCCAGCAAAATGAAGCAAGCCTTCGCAACATCCCCTGCCAGCAAAGCTGCCCG  518
            ||.||.||.|||||.||||||||||||||||||||||||||||||||.||.||||||||||||||.||||||||
Sbjct  445  CAACGGCGTCTCCAAGATGGTGCCAGCAAAATGAAGCAAGCCTTCGCGACGTCCCCTGCCAGCAAGGCTGCCCG  518

Query  519  GGAGAGTCTGACAGAGATCAATCGGAGCTTCAAGGAGTACACAGAGAATATGTGCACCATTGAAGTGGAGCTAG  592
            ||||||||||.|.||||||||.||.||||.||||||.|||||.|||||.|||||..|||||||||.||||.|.|
Sbjct  519  GGAGAGTCTGTCTGAGATCAACCGCAGCTACAAGGAATACACGGAGAACATGTGTGCCATTGAAGCGGAGTTGG  592

Query  593  AGAATCTGCTGGGAGAATTCTCCATCAAGATGAAAGGTCTGGCTGGCTTTGCACGCCTCTGTCCTGGAGATCAA  666
            |||.||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct  593  AGAGTCTGCTGGGAGAATTCTCCATCAAGATGAAAGGTCTGGCTGGCTTTGCCCGCCTCTGTCCTGGAGATCAA  666

Query  667  TATGAAATTTTCATGAAGTATGGCCGGCAGCGGTGGAAACTGAAAGGCAAAATAGAAGTAAATGGCAAGCAGAG  740
            |||||||||||||||||||||||.||||||.|||||||||||||.||||||||||||||.|||||.||.|||||
Sbjct  667  TATGAAATTTTCATGAAGTATGGTCGGCAGAGGTGGAAACTGAAGGGCAAAATAGAAGTGAATGGTAAACAGAG  740

Query  741  CTGGGATGGAGAAGAAACAGTTTTTCTGCCCCTGATAGTTGGGTTCATCTCCATCAAGGTCACGGAGCTCAAAG  814
            |||||||||||.||||||.||.||.||||||||.||||||||||||||.||.|||||||||||.||.|||||||
Sbjct  741  CTGGGATGGAGCAGAAACCGTCTTCCTGCCCCTCATAGTTGGGTTCATTTCAATCAAGGTCACAGAACTCAAAG  814

Query  815  GGCTAGCAACTCACATCCTGGTAGGTAGCGTGACCTGTGAGACCAAAGAGCTGTTTGCAGCCCGACCTCAGGTA  888
            |.||.||.|||||||||||||||||.||.||||||||.|||||||||||||||||||||||||||||.|||||.
Sbjct  815  GACTGGCGACTCACATCCTGGTAGGCAGTGTGACCTGCGAGACCAAAGAGCTGTTTGCAGCCCGACCCCAGGTG  888

Query  889  GTGGCTGTCGACATCAATGACCTTGGTACCATCAAACTGAACCTGGAAATCACCTGGTATCCATTTGACGTGGA  962
            ||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct  889  GTGGCTGTTGACATCAATGACCTTGGTACCATCAAACTGAACCTGGAAATCACCTGGTATCCCTTTGACGTGGA  962

Query  963  GGACATGACCGCATCCTCAGGCGCTGGGAACAAGGCAGCAGCCCTTCAGAGGAGAATGTCCATGTACAGCCAGG  1036
            |||||..|||.||||.||.|||.|||||||||||.||||.||.||.|||.|.||.|||||||||||||||||||
Sbjct  963  GGACACAACCCCATCGTCGGGCCCTGGGAACAAGACAGCTGCTCTCCAGCGAAGGATGTCCATGTACAGCCAGG  1036

Query 1037  GTACCCCGGAAACGCCCACCTTCAAAGACCACTCCTTCTT----------------------------------  1076
            |.|||||.|||||.||.||||||||||||||.||||||||                                  
Sbjct 1037  GCACCCCAGAAACACCTACCTTCAAAGACCAGTCCTTCTTTAGATGGTTGCGGCTGTCTGTCTTGAGTGCCTTG  1110

Query 1077  --------------------------------------------------------------------------  1076
                                                                                      
Sbjct 1111  CGAGACACTTTCTTTGCCACGTTGCACCACAACCACTCTGTCGGTGACCTGCCTTCCCTCAGCCTGAACCCCAA  1184

Query 1077  ------------------TTCAAATCTACCTGATGACATCTTTGAAAATGGAAAGGCAGCCGAGGAGAAAATGC  1132
                              |||||||||.||.||||||||||||||.|.|||||||||.||.||||||||||.||
Sbjct 1185  GGCCCTGCTAGAATTCTATTCAAATCTGCCAGATGACATCTTTGAGAGTGGAAAGGCTGCAGAGGAGAAAAGGC  1258

Query 1133  CACTGTCGCTCAGCTTCAGTGACCTGCCCAACGGGGACTGCGCCCTCACCTCCCACTCAACAGGCTCCCCTTCC  1206
            |||||||.|||||||||||||||||||...|.||.|||||.|.|.||||||||..||||.|...||||||.|||
Sbjct 1259  CACTGTCCCTCAGCTTCAGTGACCTGCAGGATGGAGACTGTGTCTTCACCTCCAGCTCAGCCACCTCCCCCTCC  1332

Query 1207  A------ACTCAACAAATCCAGAAATTACCATCACCCCTGCGGAGTTTAACCTCAGCAGCTTGGCCTCCCAGAA  1274
            |      |||||.|..|||||||.||||||||||||||.||.|||.|||.||.|||||||.||.||||.||.||
Sbjct 1333  AGTTCACACTCAGCCCATCCAGAGATTACCATCACCCCCGCAGAGCTTACCCACAGCAGCCTGTCCTCACAAAA  1406

Query 1275  TGAGGGTATGGATGACACCAGCTCAGCATCTTCCAGGAACTCCCTGGGAGAAGGCCAAGAGCCAAAGTCACACC  1348
            ||||||.|..||.||||.|||||||||.|||||||||||.|||.||||.||.|.|||.|||||.|||||.||||
Sbjct 1407  TGAGGGCACCGAGGACAGCAGCTCAGCGTCTTCCAGGAATTCCTTGGGTGAGGACCATGAGCCCAAGTCCCACC  1480

Query 1349  TGAAGGAGGAAGACCCAGAGGAGCCCAGAAAACCTGCCTCGGCCCCATCTGAGGCTTGCCGCCGACAGTCCTCA  1422
             .||.|||  .||..|.|..||||||.|.||.||.|            .||.||||        |||      |
Sbjct 1481  -CAAAGAG--TGATACGGTAGAGCCCGGGAAGCCGG------------GTGTGGCT--------ACA------A  1525

Query 1423  GGTGCTGGGGCTGAGCACCTGTTCCTTGAGAATGATGTTGCAGAAGCACTTCTGCAAGAGTCTGAGGAGGCCTC  1496
            ||| ||||..|.|||..||||||.||.||||.|..|||.||.||.||.||.|||||.||.||.||.||||||||
Sbjct 1526  GGT-CTGGTACCGAGAGCCTGTTTCTGGAGAGTAGTGTGGCCGAGGCTCTCCTGCAGGAATCGGATGAGGCCTC  1598

Query 1497  TGAGCTCAAGCCTGTGGAACTGGACACTTCGGAAGGAAACATCACAAAGCAGCTGGTCAAGAGGCTCACATCTG  1570
            ||||||||||||.||||||||||||||||..||||||||||||||||||||.|||||.|||||||||||.||.|
Sbjct 1599  TGAGCTCAAGCCCGTGGAACTGGACACTTTTGAAGGAAACATCACAAAGCAACTGGTGAAGAGGCTCACCTCGG  1672

Query 1571  CAGAGGTGCCAATGGCCACAGACAGGCTGCTCTCTGAGGGTTCTGTTGGTGGAGAATCTGAAGGCT-GCAGATC  1643
            |.||||.|||..|..|.||.||||.|||..|||.|||.||.|||||||||.|.||.|||| ||||| ||.|.||
Sbjct 1673  CTGAGGGGCCCGTCACTACTGACAAGCTTTTCTTTGAAGGCTCTGTTGGTAGCGAGTCTG-AGGCTGGCCGGTC  1745

Query 1644  CTTTCTAGATGGAAGCTTAGAGGATGCTTTTAATGGGCTTTTACTTGCATTAGAACCACATAAAGAGCAGTATA  1717
            ||||||.|||||.|||.|.||.|||||.||.|||||.||.||.|||||||||||.|||||.||..|||||||.|
Sbjct 1746  CTTTCTGGATGGCAGCCTGGAAGATGCCTTCAATGGACTCTTCCTTGCATTAGACCCACACAAGAAGCAGTACA  1819

Query 1718  AAGAGTTTCAGGATCTGAACCAAGAAGTCATGAATTTGGANGATATTCTAAAA---AAG---------------  1773
            |||||||.||||||||||||||||||||||...|.|||||.|||.||||.|||   |||               
Sbjct 1820  AAGAGTTCCAGGATCTGAACCAAGAAGTCACTCACTTGGATGATGTTCTCAAATGCAAGCCGGCTGGCAGCCGC  1893

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 1894  AGCAGGTCTTCCAGCCTAAGTCTGACGGTTGAGAGTGCTTTAGAAAGCTTTGATTTCCTCAACACCTCTGACTT  1967

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 1968  TGACGAAGAGGAAGAGGATGGCGATGACGTCTGCCACGTTGGAGGAGGCGCAGACTCCGTGTTTTCAGATACTG  2041

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2042  AGACTGAGAAGAGTGGTTACAGGTCAGTTCACCCGGAAGCCAGGGGTCACCTTAGCGAGGCTCTGACTGAAGAC  2115

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2116  ACAGGTGTAGGCACCAGTGTGGCAGGAAGCCCGCTCCCACTCACCACAGGAAATGAGAGCCTGGACATCACCAT  2189

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2190  AGTCAAACATCTACAATACTGCACCCAGCTCATCCAGCAAATCGTCTTCTCTAGCAAAACCCCCTTTGTGGCAA  2263

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2264  GAAGTCTCTTGGAGAAGCTGTCGAGGCAGGTCCTTGTGATGCAGAAGCTGGCAGCCGTGAGTGACGAGAACCTC  2337

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2338  GGGAACATCACCTCTGTGGTGGAAGCCATACCAGAATTTCACAAAAAGCTCTCCTTGCTGGCCTTCTGGACCAA  2411

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2412  ATGCTGCAGCCCCAGCGGGGTCTACCACAGCTCCGCTGCCCGCCTCATCAAGCAGCTGGAGGCCAGCTTCGCCA  2485

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2486  GAAGCATCAACAAAGACTATCCAGGACTGGCAGAGCCAGTGTTTAGAACCCTGGTGTCCCAAATCCTGGACCGA  2559

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2560  GCTGAACCTCTCCTTTCCTCCAGCCTCTCGTCGGAAGTCATCACTGTCTTCCAGTACTACAGCTTCTTCACCAG  2633

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2634  CCACGGTGTGAGTGACCTGGAGACTTACCTGGGCCAGCTAACCAGGCAAGTTGCCATGGTTCAGACTCTGCAGT  2707

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2708  CACTGAGAGATGAGAAACTGCTGCAGACTATGAGCGACCTTGCACCCAGCAACCTCCCCGCTCAACAGGAAGTC  2781

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2782  CTCAGGACGCTGGCCCTGCTGCTCACCAGGGATGACAATGAGGTCAGCGAAGCTGTGACACTCTACTTGGCAGC  2855

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2856  AGCCTCCAAAAATGAGCACTTCAGAGAAAAGGCCTTGCTCTATTATTGCGAAGCACTAACGAAGGCCAATCTCC  2929

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2930  AGCTACAGAAGGCAGCATGTCTGGCCCTAAAGAGCCTGGAGGCCACCGAAAGCATTAAAATGCTAGTGACGTTG  3003

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 3004  TGTCAGTCTGACACTGAAGAAATCAGAACCGTGGCCTCGGAAACCCTCCTCTCTCTTGGAGAAGACGGGCGACT  3077

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 3078  GGCGTACGAGCAATTAGACAAATTCCCTCGAGATTGTGTTAAAGTGGGAGGTCGTCATGGAACCGAAGTTGCCA  3151

Query 1774  --------  1773
                    
Sbjct 3152  CAGCCTTT  3159

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