Nucleotide Global Alignment

Description

Query:
ccsbBroad304_07481
Subject:
NM_001286101.1
Aligned Length:
1846
Identities:
1490
Gaps:
104

Alignment

Query    1  ATGTTGGTAGGATCCCAGTCTTTTTCGCCTGGAGGGCCCAATGGGATCATTAGAAGCCAGTCCTTTGCGGGTTT  74
            |||.||||.|||||||||||.||.||.|||||.|||||||||||.|||||..|.|||||||||||.||.|||||
Sbjct    1  ATGCTGGTGGGATCCCAGTCCTTCTCTCCTGGCGGGCCCAATGGCATCATCCGGAGCCAGTCCTTCGCAGGTTT  74

Query   75  CAGCGGCCTCCAGGAAAGGCGATCCAGGTGTAACTCCTTCATTGAAAATTCCTCCGCTCTCAAGAAGCCTCAGG  148
            |||.||.||.|||||||||||.|||||||||||||||||||||||||||.||||.|||||||||||||||||||
Sbjct   75  CAGTGGGCTGCAGGAAAGGCGGTCCAGGTGTAACTCCTTCATTGAAAATGCCTCGGCTCTCAAGAAGCCTCAGG  148

Query  149  CCAAACTGAAGAAAATGCACAATTTAGGCCACAAAAACAACAATCCCCCCAAAGAGCCTCAGCCTAAAAGGGTG  222
            ||||.||||||||||||||.|||.|.||.||||||||.|||||..|.|||||.|||||||||||.||.||.|||
Sbjct  149  CCAAGCTGAAGAAAATGCATAATCTTGGACACAAAAATAACAACACTCCCAAGGAGCCTCAGCCGAAGAGAGTG  222

Query  223  GAAGAAGTCTACAGGGCCTTGAAAAATGGACTTGATGAATATCTGGAGGTTCACCAGACGGAGCTGGACAAGTT  296
            ||.||.||||||.||||||||||.||.||.||||||||.||.||||||.||||||||||||||||||||||.||
Sbjct  223  GAGGAGGTCTACCGGGCCTTGAAGAACGGGCTTGATGAGTACCTGGAGTTTCACCAGACGGAGCTGGACAAATT  296

Query  297  GACAGCTCAGTTAAAAGATATGAAAAGAAACTCTCGCCTGGGTGTACTGTATGACCTAGACAAGCAAATTAAAA  370
            |||.|||||.||||||||||||||.||||||||||||||||||||.||||||||||||||||||||||||||||
Sbjct  297  GACTGCTCAATTAAAAGATATGAAGAGAAACTCTCGCCTGGGTGTGCTGTATGACCTAGACAAGCAAATTAAAA  370

Query  371  CAATTGAAAGATACATGAGACGCCTGGAGTTTCATATAAGTAAGGTAGATGAACTCTATGAAGCTTATTGTATC  444
            |.|||||.|||||||||.||||||||||||||||.||.|||||||||||.||.|||||||||||.|||||||||
Sbjct  371  CGATTGAGAGATACATGCGACGCCTGGAGTTTCACATTAGTAAGGTAGACGAGCTCTATGAAGCCTATTGTATC  444

Query  445  CAGCGACGCCTCCAGGATGGTGCCAGCAAAATGAAGCAAGCCTTCGCAACATCCCCTGCCAGCAAAGCTGCCCG  518
            ||.||.||.|||||.||||||||||||||||||||||||||||||||.||.||||||||||||||.||||||||
Sbjct  445  CAACGGCGTCTCCAAGATGGTGCCAGCAAAATGAAGCAAGCCTTCGCGACGTCCCCTGCCAGCAAGGCTGCCCG  518

Query  519  GGAGAGTCTGACAGAGATCAATCGGAGCTTCAAGGAGTACACAGAGAATATGTGCACCATTGAAGTGGAGCTAG  592
            ||||||||||.|.||||||||.||.||||.||||||.|||||.|||||.|||||..|||||||||.||||.|.|
Sbjct  519  GGAGAGTCTGTCTGAGATCAACCGCAGCTACAAGGAATACACGGAGAACATGTGTGCCATTGAAGCGGAGTTGG  592

Query  593  AGAATCTGCTGGGAGAATTCTCCATCAAGATGAAAGGTCTGGCTGGCTTTGCACGCCTCTGTCCTGGAGATCAA  666
            |||.||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct  593  AGAGTCTGCTGGGAGAATTCTCCATCAAGATGAAAGGTCTGGCTGGCTTTGCCCGCCTCTGTCCTGGAGATCAA  666

Query  667  TATGAAATTTTCATGAAGTATGGCCGGCAGCGGTGGAAACTGAAAGGCAAAATAGAAGTAAATGGCAAGCAGAG  740
            |||||||||||||||||||||||.||||||.|||||||||||||.||||||||||||||.|||||.||.|||||
Sbjct  667  TATGAAATTTTCATGAAGTATGGTCGGCAGAGGTGGAAACTGAAGGGCAAAATAGAAGTGAATGGTAAACAGAG  740

Query  741  CTGGGATGGAGAAGAAACAGTTTTTCTGCCCCTGATAGTTGGGTTCATCTCCATCAAGGTCACGGAGCTCAAAG  814
            |||||||||||.||||||.||.||.||||||||.||||||||||||||.||.|||||||||||.||.|||||||
Sbjct  741  CTGGGATGGAGCAGAAACCGTCTTCCTGCCCCTCATAGTTGGGTTCATTTCAATCAAGGTCACAGAACTCAAAG  814

Query  815  GGCTAGCAACTCACATCCTGGTAGGTAGCGTGACCTGTGAGACCAAAGAGCTGTTTGCAGCCCGACCTCAGGTA  888
            |.||.||.|||||||||||||||||.||.||||||||.|||||||||||||||||||||||||||||.|||||.
Sbjct  815  GACTGGCGACTCACATCCTGGTAGGCAGTGTGACCTGCGAGACCAAAGAGCTGTTTGCAGCCCGACCCCAGGTG  888

Query  889  GTGGCTGTCGACATCAATGACCTTGGTACCATCAAACTGAACCTGGAAATCACCTGGTATCCATTTGACGTGGA  962
            ||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct  889  GTGGCTGTTGACATCAATGACCTTGGTACCATCAAACTGAACCTGGAAATCACCTGGTATCCCTTTGACGTGGA  962

Query  963  GGACATGACCGCATCCTCAGGCGCTGGGAACAAGGCAGCAGCCCTTCAGAGGAGAATGTCCATGTACAGCCAGG  1036
            |||||..|||.||||.||.|||.|||||||||||.||||.||.||.|||.|.||.|||||||||||||||||||
Sbjct  963  GGACACAACCCCATCGTCGGGCCCTGGGAACAAGACAGCTGCTCTCCAGCGAAGGATGTCCATGTACAGCCAGG  1036

Query 1037  GTACCCCGGAAACGCCCACCTTCAAAGACCACTCCTTCTTTTCAAATCTACCTGATGACATCTTTGAAAATGGA  1110
            |.|||||.|||||.||.||||||||||||||.|||||||||||||||||.||.||||||||||||||.|.||||
Sbjct 1037  GCACCCCAGAAACACCTACCTTCAAAGACCAGTCCTTCTTTTCAAATCTGCCAGATGACATCTTTGAGAGTGGA  1110

Query 1111  AAGGCAGCCGAGGAGAAAATGCCACTGTCGCTCAGCTTCAGTGACCTGCCCAACGGGGACTGCGCCCTCACCTC  1184
            |||||.||.||||||||||.|||||||||.|||||||||||||||||||...|.||.|||||.|.|.|||||||
Sbjct 1111  AAGGCTGCAGAGGAGAAAAGGCCACTGTCCCTCAGCTTCAGTGACCTGCAGGATGGAGACTGTGTCTTCACCTC  1184

Query 1185  CCACTCAACAGGCTCCCCTTCCA------ACTCAACAAATCCAGAAATTACCATCACCCCTGCGGAGTTTAACC  1252
            |..||||.|...||||||.||||      |||||.|..|||||||.||||||||||||||.||.|||.|||.||
Sbjct 1185  CAGCTCAGCCACCTCCCCCTCCAGTTCACACTCAGCCCATCCAGAGATTACCATCACCCCCGCAGAGCTTACCC  1258

Query 1253  TCAGCAGCTTGGCCTCCCAGAATGAGGGTATGGATGACACCAGCTCAGCATCTTCCAGGAACTCCCTGGGAGAA  1326
            .|||||||.||.||||.||.||||||||.|..||.||||.|||||||||.|||||||||||.|||.||||.||.
Sbjct 1259  ACAGCAGCCTGTCCTCACAAAATGAGGGCACCGAGGACAGCAGCTCAGCGTCTTCCAGGAATTCCTTGGGTGAG  1332

Query 1327  GGCCAAGAGCCAAAGTCACACCTGAAGGAGGAAGACCCAGAGGAGCCCAGAAAACCTGCCTCGGCCCCATCTGA  1400
            |.|||.|||||.|||||.|||| .||.|||  .||..|.|..||||||.|.||.||.|            .||.
Sbjct 1333  GACCATGAGCCCAAGTCCCACC-CAAAGAG--TGATACGGTAGAGCCCGGGAAGCCGG------------GTGT  1391

Query 1401  GGCTTGCCGCCGACAGTCCTCAGGTGCTGGGGCTGAGCACCTGTTCCTTGAGAATGATGTTGCAGAAGCACTTC  1474
            ||||        |||      |||| ||||..|.|||..||||||.||.||||.|..|||.||.||.||.||.|
Sbjct 1392  GGCT--------ACA------AGGT-CTGGTACCGAGAGCCTGTTTCTGGAGAGTAGTGTGGCCGAGGCTCTCC  1450

Query 1475  TGCAAGAGTCTGAGGAGGCCTCTGAGCTCAAGCCTGTGGAACTGGACACTTCGGAAGGAAACATCACAAAGCAG  1548
            ||||.||.||.||.||||||||||||||||||||.||||||||||||||||..||||||||||||||||||||.
Sbjct 1451  TGCAGGAATCGGATGAGGCCTCTGAGCTCAAGCCCGTGGAACTGGACACTTTTGAAGGAAACATCACAAAGCAA  1524

Query 1549  CTGGTCAAGAGGCTCACATCTGCAGAGGTGCCAATGGCCACAGACAGGCTGCTCTCTGAGGGTTCTGTTGGTGG  1622
            |||||.|||||||||||.||.||.||||.|||..|..|.||.||||.|||..|||.|||.||.|||||||||.|
Sbjct 1525  CTGGTGAAGAGGCTCACCTCGGCTGAGGGGCCCGTCACTACTGACAAGCTTTTCTTTGAAGGCTCTGTTGGTAG  1598

Query 1623  AGAATCTGAAGGCT-GCAGATCCTTTCTAGATGGAAGCTTAGAGGATGCTTTTAATGGGCTTTTACTTGCATTA  1695
            .||.|||| ||||| ||.|.||||||||.|||||.|||.|.||.|||||.||.|||||.||.||.|||||||||
Sbjct 1599  CGAGTCTG-AGGCTGGCCGGTCCTTTCTGGATGGCAGCCTGGAAGATGCCTTCAATGGACTCTTCCTTGCATTA  1671

Query 1696  GAACCACATAAAGAGCAGTATAAAGAGTTTCAGGATCTGAACCAAGAAGTCATGAATTTGGANGATATTCTAAA  1769
            ||.|||||.||..|||||||.||||||||.||||||||||||||||||||||...|.|||||.|||.||||.||
Sbjct 1672  GACCCACACAAGAAGCAGTACAAAGAGTTCCAGGATCTGAACCAAGAAGTCACTCACTTGGATGATGTTCTCAA  1745

Query 1770  AAAG------------------------------------------------------------------  1773
            |.|.                                                                  
Sbjct 1746  AGATGCTAAACATCTTGAGGATCAGAGACTCAATGATGCTGCTTCCCGGATGGAGATCACAGAGGGTGAA  1815

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