Nucleotide Global Alignment

Description

Query:
ccsbBroad304_07481
Subject:
NM_178658.5
Aligned Length:
1930
Identities:
1490
Gaps:
188

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCAATTCCTTGACCCTGAGGATCTTCTGGATGAAGAGGATGACATTTTTGGCGAAGGACTGCCAACCAGACT  74

Query    1  ----------ATGTTGGTAGGATCCCAGTCTTTTTCGCCTGGAGGGCCCAATGGGATCATTAGAAGCCAGTCCT  64
                      |||.||||.|||||||||||.||.||.|||||.|||||||||||.|||||..|.||||||||||
Sbjct   75  CCCAGAAATCATGCTGGTGGGATCCCAGTCCTTCTCTCCTGGCGGGCCCAATGGCATCATCCGGAGCCAGTCCT  148

Query   65  TTGCGGGTTTCAGCGGCCTCCAGGAAAGGCGATCCAGGTGTAACTCCTTCATTGAAAATTCCTCCGCTCTCAAG  138
            |.||.||||||||.||.||.|||||||||||.|||||||||||||||||||||||||||.||||.|||||||||
Sbjct  149  TCGCAGGTTTCAGTGGGCTGCAGGAAAGGCGGTCCAGGTGTAACTCCTTCATTGAAAATGCCTCGGCTCTCAAG  222

Query  139  AAGCCTCAGGCCAAACTGAAGAAAATGCACAATTTAGGCCACAAAAACAACAATCCCCCCAAAGAGCCTCAGCC  212
            ||||||||||||||.||||||||||||||.|||.|.||.||||||||.|||||..|.|||||.|||||||||||
Sbjct  223  AAGCCTCAGGCCAAGCTGAAGAAAATGCATAATCTTGGACACAAAAATAACAACACTCCCAAGGAGCCTCAGCC  296

Query  213  TAAAAGGGTGGAAGAAGTCTACAGGGCCTTGAAAAATGGACTTGATGAATATCTGGAGGTTCACCAGACGGAGC  286
            .||.||.|||||.||.||||||.||||||||||.||.||.||||||||.||.||||||.|||||||||||||||
Sbjct  297  GAAGAGAGTGGAGGAGGTCTACCGGGCCTTGAAGAACGGGCTTGATGAGTACCTGGAGTTTCACCAGACGGAGC  370

Query  287  TGGACAAGTTGACAGCTCAGTTAAAAGATATGAAAAGAAACTCTCGCCTGGGTGTACTGTATGACCTAGACAAG  360
            |||||||.|||||.|||||.||||||||||||||.||||||||||||||||||||.||||||||||||||||||
Sbjct  371  TGGACAAATTGACTGCTCAATTAAAAGATATGAAGAGAAACTCTCGCCTGGGTGTGCTGTATGACCTAGACAAG  444

Query  361  CAAATTAAAACAATTGAAAGATACATGAGACGCCTGGAGTTTCATATAAGTAAGGTAGATGAACTCTATGAAGC  434
            |||||||||||.|||||.|||||||||.||||||||||||||||.||.|||||||||||.||.|||||||||||
Sbjct  445  CAAATTAAAACGATTGAGAGATACATGCGACGCCTGGAGTTTCACATTAGTAAGGTAGACGAGCTCTATGAAGC  518

Query  435  TTATTGTATCCAGCGACGCCTCCAGGATGGTGCCAGCAAAATGAAGCAAGCCTTCGCAACATCCCCTGCCAGCA  508
            .|||||||||||.||.||.|||||.||||||||||||||||||||||||||||||||.||.|||||||||||||
Sbjct  519  CTATTGTATCCAACGGCGTCTCCAAGATGGTGCCAGCAAAATGAAGCAAGCCTTCGCGACGTCCCCTGCCAGCA  592

Query  509  AAGCTGCCCGGGAGAGTCTGACAGAGATCAATCGGAGCTTCAAGGAGTACACAGAGAATATGTGCACCATTGAA  582
            |.||||||||||||||||||.|.||||||||.||.||||.||||||.|||||.|||||.|||||..||||||||
Sbjct  593  AGGCTGCCCGGGAGAGTCTGTCTGAGATCAACCGCAGCTACAAGGAATACACGGAGAACATGTGTGCCATTGAA  666

Query  583  GTGGAGCTAGAGAATCTGCTGGGAGAATTCTCCATCAAGATGAAAGGTCTGGCTGGCTTTGCACGCCTCTGTCC  656
            |.||||.|.||||.||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct  667  GCGGAGTTGGAGAGTCTGCTGGGAGAATTCTCCATCAAGATGAAAGGTCTGGCTGGCTTTGCCCGCCTCTGTCC  740

Query  657  TGGAGATCAATATGAAATTTTCATGAAGTATGGCCGGCAGCGGTGGAAACTGAAAGGCAAAATAGAAGTAAATG  730
            |||||||||||||||||||||||||||||||||.||||||.|||||||||||||.||||||||||||||.||||
Sbjct  741  TGGAGATCAATATGAAATTTTCATGAAGTATGGTCGGCAGAGGTGGAAACTGAAGGGCAAAATAGAAGTGAATG  814

Query  731  GCAAGCAGAGCTGGGATGGAGAAGAAACAGTTTTTCTGCCCCTGATAGTTGGGTTCATCTCCATCAAGGTCACG  804
            |.||.||||||||||||||||.||||||.||.||.||||||||.||||||||||||||.||.|||||||||||.
Sbjct  815  GTAAACAGAGCTGGGATGGAGCAGAAACCGTCTTCCTGCCCCTCATAGTTGGGTTCATTTCAATCAAGGTCACA  888

Query  805  GAGCTCAAAGGGCTAGCAACTCACATCCTGGTAGGTAGCGTGACCTGTGAGACCAAAGAGCTGTTTGCAGCCCG  878
            ||.||||||||.||.||.|||||||||||||||||.||.||||||||.||||||||||||||||||||||||||
Sbjct  889  GAACTCAAAGGACTGGCGACTCACATCCTGGTAGGCAGTGTGACCTGCGAGACCAAAGAGCTGTTTGCAGCCCG  962

Query  879  ACCTCAGGTAGTGGCTGTCGACATCAATGACCTTGGTACCATCAAACTGAACCTGGAAATCACCTGGTATCCAT  952
            |||.|||||.||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct  963  ACCCCAGGTGGTGGCTGTTGACATCAATGACCTTGGTACCATCAAACTGAACCTGGAAATCACCTGGTATCCCT  1036

Query  953  TTGACGTGGAGGACATGACCGCATCCTCAGGCGCTGGGAACAAGGCAGCAGCCCTTCAGAGGAGAATGTCCATG  1026
            |||||||||||||||..|||.||||.||.|||.|||||||||||.||||.||.||.|||.|.||.|||||||||
Sbjct 1037  TTGACGTGGAGGACACAACCCCATCGTCGGGCCCTGGGAACAAGACAGCTGCTCTCCAGCGAAGGATGTCCATG  1110

Query 1027  TACAGCCAGGGTACCCCGGAAACGCCCACCTTCAAAGACCACTCCTTCTTTTCAAATCTACCTGATGACATCTT  1100
            |||||||||||.|||||.|||||.||.||||||||||||||.|||||||||||||||||.||.|||||||||||
Sbjct 1111  TACAGCCAGGGCACCCCAGAAACACCTACCTTCAAAGACCAGTCCTTCTTTTCAAATCTGCCAGATGACATCTT  1184

Query 1101  TGAAAATGGAAAGGCAGCCGAGGAGAAAATGCCACTGTCGCTCAGCTTCAGTGACCTGCCCAACGGGGACTGCG  1174
            |||.|.|||||||||.||.||||||||||.|||||||||.|||||||||||||||||||...|.||.|||||.|
Sbjct 1185  TGAGAGTGGAAAGGCTGCAGAGGAGAAAAGGCCACTGTCCCTCAGCTTCAGTGACCTGCAGGATGGAGACTGTG  1258

Query 1175  CCCTCACCTCCCACTCAACAGGCTCCCCTTCCA------ACTCAACAAATCCAGAAATTACCATCACCCCTGCG  1242
            .|.||||||||..||||.|...||||||.||||      |||||.|..|||||||.||||||||||||||.||.
Sbjct 1259  TCTTCACCTCCAGCTCAGCCACCTCCCCCTCCAGTTCACACTCAGCCCATCCAGAGATTACCATCACCCCCGCA  1332

Query 1243  GAGTTTAACCTCAGCAGCTTGGCCTCCCAGAATGAGGGTATGGATGACACCAGCTCAGCATCTTCCAGGAACTC  1316
            |||.|||.||.|||||||.||.||||.||.||||||||.|..||.||||.|||||||||.|||||||||||.||
Sbjct 1333  GAGCTTACCCACAGCAGCCTGTCCTCACAAAATGAGGGCACCGAGGACAGCAGCTCAGCGTCTTCCAGGAATTC  1406

Query 1317  CCTGGGAGAAGGCCAAGAGCCAAAGTCACACCTGAAGGAGGAAGACCCAGAGGAGCCCAGAAAACCTGCCTCGG  1390
            |.||||.||.|.|||.|||||.|||||.|||| .||.|||  .||..|.|..||||||.|.||.||.|      
Sbjct 1407  CTTGGGTGAGGACCATGAGCCCAAGTCCCACC-CAAAGAG--TGATACGGTAGAGCCCGGGAAGCCGG------  1471

Query 1391  CCCCATCTGAGGCTTGCCGCCGACAGTCCTCAGGTGCTGGGGCTGAGCACCTGTTCCTTGAGAATGATGTTGCA  1464
                  .||.||||        |||      |||| ||||..|.|||..||||||.||.||||.|..|||.||.
Sbjct 1472  ------GTGTGGCT--------ACA------AGGT-CTGGTACCGAGAGCCTGTTTCTGGAGAGTAGTGTGGCC  1524

Query 1465  GAAGCACTTCTGCAAGAGTCTGAGGAGGCCTCTGAGCTCAAGCCTGTGGAACTGGACACTTCGGAAGGAAACAT  1538
            ||.||.||.|||||.||.||.||.||||||||||||||||||||.||||||||||||||||..|||||||||||
Sbjct 1525  GAGGCTCTCCTGCAGGAATCGGATGAGGCCTCTGAGCTCAAGCCCGTGGAACTGGACACTTTTGAAGGAAACAT  1598

Query 1539  CACAAAGCAGCTGGTCAAGAGGCTCACATCTGCAGAGGTGCCAATGGCCACAGACAGGCTGCTCTCTGAGGGTT  1612
            |||||||||.|||||.|||||||||||.||.||.||||.|||..|..|.||.||||.|||..|||.|||.||.|
Sbjct 1599  CACAAAGCAACTGGTGAAGAGGCTCACCTCGGCTGAGGGGCCCGTCACTACTGACAAGCTTTTCTTTGAAGGCT  1672

Query 1613  CTGTTGGTGGAGAATCTGAAGGCT-GCAGATCCTTTCTAGATGGAAGCTTAGAGGATGCTTTTAATGGGCTTTT  1685
            ||||||||.|.||.|||| ||||| ||.|.||||||||.|||||.|||.|.||.|||||.||.|||||.||.||
Sbjct 1673  CTGTTGGTAGCGAGTCTG-AGGCTGGCCGGTCCTTTCTGGATGGCAGCCTGGAAGATGCCTTCAATGGACTCTT  1745

Query 1686  ACTTGCATTAGAACCACATAAAGAGCAGTATAAAGAGTTTCAGGATCTGAACCAAGAAGTCATGAATTTGGANG  1759
            .|||||||||||.|||||.||..|||||||.||||||||.||||||||||||||||||||||...|.|||||.|
Sbjct 1746  CCTTGCATTAGACCCACACAAGAAGCAGTACAAAGAGTTCCAGGATCTGAACCAAGAAGTCACTCACTTGGATG  1819

Query 1760  ATATTCTAAAAAAG------------------------------------------------------------  1773
            ||.||||.|||.|.                                                            
Sbjct 1820  ATGTTCTCAAAGATGCTAAACATCTTGAGGATCAGAGACTCAATGATGCTGCTTCCCGGATGGAGATCACAGAG  1893

Query 1774  ------  1773
                  
Sbjct 1894  GGTGAA  1899

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