Nucleotide Global Alignment

Description

Query:
ccsbBroad304_07481
Subject:
XM_006516588.1
Aligned Length:
3274
Identities:
1492
Gaps:
1532

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCAATTCCTTGACCCTGAGGATCTTCTGGATGAAGAGGATGACATTTTTGGCGAAGGACTGCCAACCAGACT  74

Query    1  ----------ATGTTGGTAGGATCCCAGTCTTTTTCGCCTGGAGGGCCCAATGGGATCATTAGAAGCCAGTCCT  64
                      |||.||||.|||||||||||.||.||.|||||.|||||||||||.|||||..|.||||||||||
Sbjct   75  CCCAGAAATCATGCTGGTGGGATCCCAGTCCTTCTCTCCTGGCGGGCCCAATGGCATCATCCGGAGCCAGTCCT  148

Query   65  TTGCGGGTTTCAGCGGCCTCCAGGAAAGGCGATCCAGGTGTAACTCCTTCATTGAAAATTCCTCCGCTCTCAAG  138
            |.||.||||||||.||.||.|||||||||||.|||||||||||||||||||||||||||.||||.|||||||||
Sbjct  149  TCGCAGGTTTCAGTGGGCTGCAGGAAAGGCGGTCCAGGTGTAACTCCTTCATTGAAAATGCCTCGGCTCTCAAG  222

Query  139  AAGCCTCAGGCCAAACTGAAGAAAATGCACAATTTAGGCCACAAAAACAACAATCCCCCCAAAGAGCCTCAGCC  212
            ||||||||||||||.||||||||||||||.|||.|.||.||||||||.|||||..|.|||||.|||||||||||
Sbjct  223  AAGCCTCAGGCCAAGCTGAAGAAAATGCATAATCTTGGACACAAAAATAACAACACTCCCAAGGAGCCTCAGCC  296

Query  213  TAAAAGGGTGGAAGAAGTCTACAGGGCCTTGAAAAATGGACTTGATGAATATCTGGAGGTTCACCAGACGGAGC  286
            .||.||.|||||.||.||||||.||||||||||.||.||.||||||||.||.||||||.|||||||||||||||
Sbjct  297  GAAGAGAGTGGAGGAGGTCTACCGGGCCTTGAAGAACGGGCTTGATGAGTACCTGGAGTTTCACCAGACGGAGC  370

Query  287  TGGACAAGTTGACAGCTCAGTTAAAAGATATGAAAAGAAACTCTCGCCTGGGTGTACTGTATGACCTAGACAAG  360
            |||||||.|||||.|||||.||||||||||||||.||||||||||||||||||||.||||||||||||||||||
Sbjct  371  TGGACAAATTGACTGCTCAATTAAAAGATATGAAGAGAAACTCTCGCCTGGGTGTGCTGTATGACCTAGACAAG  444

Query  361  CAAATTAAAACAATTGAAAGATACATGAGACGCCTGGAGTTTCATATAAGTAAGGTAGATGAACTCTATGAAGC  434
            |||||||||||.|||||.|||||||||.||||||||||||||||.||.|||||||||||.||.|||||||||||
Sbjct  445  CAAATTAAAACGATTGAGAGATACATGCGACGCCTGGAGTTTCACATTAGTAAGGTAGACGAGCTCTATGAAGC  518

Query  435  TTATTGTATCCAGCGACGCCTCCAGGATGGTGCCAGCAAAATGAAGCAAGCCTTCGCAACATCCCCTGCCAGCA  508
            .|||||||||||.||.||.|||||.||||||||||||||||||||||||||||||||.||.|||||||||||||
Sbjct  519  CTATTGTATCCAACGGCGTCTCCAAGATGGTGCCAGCAAAATGAAGCAAGCCTTCGCGACGTCCCCTGCCAGCA  592

Query  509  AAGCTGCCCGGGAGAGTCTGACAGAGATCAATCGGAGCTTCAAGGAGTACACAGAGAATATGTGCACCATTGAA  582
            |.||||||||||||||||||.|.||||||||.||.||||.||||||.|||||.|||||.|||||..||||||||
Sbjct  593  AGGCTGCCCGGGAGAGTCTGTCTGAGATCAACCGCAGCTACAAGGAATACACGGAGAACATGTGTGCCATTGAA  666

Query  583  GTGGAGCTAGAGAATCTGCTGGGAGAATTCTCCATCAAGATGAAAGGTCTGGCTGGCTTTGCACGCCTCTGTCC  656
            |.||||.|.||||.||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct  667  GCGGAGTTGGAGAGTCTGCTGGGAGAATTCTCCATCAAGATGAAAGGTCTGGCTGGCTTTGCCCGCCTCTGTCC  740

Query  657  TGGAGATCAATATGAAATTTTCATGAAGTATGGCCGGCAGCGGTGGAAACTGAAAGGCAAAATAGAAGTAAATG  730
            |||||||||||||||||||||||||||||||||.||||||.|||||||||||||.||||||||||||||.||||
Sbjct  741  TGGAGATCAATATGAAATTTTCATGAAGTATGGTCGGCAGAGGTGGAAACTGAAGGGCAAAATAGAAGTGAATG  814

Query  731  GCAAGCAGAGCTGGGATGGAGAAGAAACAGTTTTTCTGCCCCTGATAGTTGGGTTCATCTCCATCAAGGTCACG  804
            |.||.||||||||||||||||.||||||.||.||.||||||||.||||||||||||||.||.|||||||||||.
Sbjct  815  GTAAACAGAGCTGGGATGGAGCAGAAACCGTCTTCCTGCCCCTCATAGTTGGGTTCATTTCAATCAAGGTCACA  888

Query  805  GAGCTCAAAGGGCTAGCAACTCACATCCTGGTAGGTAGCGTGACCTGTGAGACCAAAGAGCTGTTTGCAGCCCG  878
            ||.||||||||.||.||.|||||||||||||||||.||.||||||||.||||||||||||||||||||||||||
Sbjct  889  GAACTCAAAGGACTGGCGACTCACATCCTGGTAGGCAGTGTGACCTGCGAGACCAAAGAGCTGTTTGCAGCCCG  962

Query  879  ACCTCAGGTAGTGGCTGTCGACATCAATGACCTTGGTACCATCAAACTGAACCTGGAAATCACCTGGTATCCAT  952
            |||.|||||.||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct  963  ACCCCAGGTGGTGGCTGTTGACATCAATGACCTTGGTACCATCAAACTGAACCTGGAAATCACCTGGTATCCCT  1036

Query  953  TTGACGTGGAGGACATGACCGCATCCTCAGGCGCTGGGAACAAGGCAGCAGCCCTTCAGAGGAGAATGTCCATG  1026
            |||||||||||||||..|||.||||.||.|||.|||||||||||.||||.||.||.|||.|.||.|||||||||
Sbjct 1037  TTGACGTGGAGGACACAACCCCATCGTCGGGCCCTGGGAACAAGACAGCTGCTCTCCAGCGAAGGATGTCCATG  1110

Query 1027  TACAGCCAGGGTACCCCGGAAACGCCCACCTTCAAAGACCACTCCTTCTT------------------------  1076
            |||||||||||.|||||.|||||.||.||||||||||||||.||||||||                        
Sbjct 1111  TACAGCCAGGGCACCCCAGAAACACCTACCTTCAAAGACCAGTCCTTCTTTAGATGGTTGCGGCTGTCTGTCTT  1184

Query 1077  --------------------------------------------------------------------------  1076
                                                                                      
Sbjct 1185  GAGTGCCTTGCGAGACACTTTCTTTGCCACGTTGCACCACAACCACTCTGTCGGTGACCTGCCTTCCCTCAGCC  1258

Query 1077  ----------------------------TTCAAATCTACCTGATGACATCTTTGAAAATGGAAAGGCAGCCGAG  1122
                                        |||||||||.||.||||||||||||||.|.|||||||||.||.|||
Sbjct 1259  TGAACCCCAAGGCCCTGCTAGAATTCTATTCAAATCTGCCAGATGACATCTTTGAGAGTGGAAAGGCTGCAGAG  1332

Query 1123  GAGAAAATGCCACTGTCGCTCAGCTTCAGTGACCTGCCCAACGGGGACTGCGCCCTCACCTCCCACTCAACAGG  1196
            |||||||.|||||||||.|||||||||||||||||||...|.||.|||||.|.|.||||||||..||||.|...
Sbjct 1333  GAGAAAAGGCCACTGTCCCTCAGCTTCAGTGACCTGCAGGATGGAGACTGTGTCTTCACCTCCAGCTCAGCCAC  1406

Query 1197  CTCCCCTTCCA------ACTCAACAAATCCAGAAATTACCATCACCCCTGCGGAGTTTAACCTCAGCAGCTTGG  1264
            ||||||.||||      |||||.|..|||||||.||||||||||||||.||.|||.|||.||.|||||||.||.
Sbjct 1407  CTCCCCCTCCAGTTCACACTCAGCCCATCCAGAGATTACCATCACCCCCGCAGAGCTTACCCACAGCAGCCTGT  1480

Query 1265  CCTCCCAGAATGAGGGTATGGATGACACCAGCTCAGCATCTTCCAGGAACTCCCTGGGAGAAGGCCAAGAGCCA  1338
            ||||.||.||||||||.|..||.||||.|||||||||.|||||||||||.|||.||||.||.|.|||.|||||.
Sbjct 1481  CCTCACAAAATGAGGGCACCGAGGACAGCAGCTCAGCGTCTTCCAGGAATTCCTTGGGTGAGGACCATGAGCCC  1554

Query 1339  AAGTCACACCTGAAGGAGGAAGACCCAGAGGAGCCCAGAAAACCTGCCTCGGCCCCATCTGAGGCTTGCCGCCG  1412
            |||||.|||| .||.|||  .||..|.|..||||||.|.||.||.|            .||.||||        
Sbjct 1555  AAGTCCCACC-CAAAGAG--TGATACGGTAGAGCCCGGGAAGCCGG------------GTGTGGCT--------  1605

Query 1413  ACAGTCCTCAGGTGCTGGGGCTGAGCACCTGTTCCTTGAGAATGATGTTGCAGAAGCACTTCTGCAAGAGTCTG  1486
            |||      |||| ||||..|.|||..||||||.||.||||.|..|||.||.||.||.||.|||||.||.||.|
Sbjct 1606  ACA------AGGT-CTGGTACCGAGAGCCTGTTTCTGGAGAGTAGTGTGGCCGAGGCTCTCCTGCAGGAATCGG  1672

Query 1487  AGGAGGCCTCTGAGCTCAAGCCTGTGGAACTGGACACTTCGGAAGGAAACATCACAAAGCAGCTGGTCAAGAGG  1560
            |.||||||||||||||||||||.||||||||||||||||..||||||||||||||||||||.|||||.||||||
Sbjct 1673  ATGAGGCCTCTGAGCTCAAGCCCGTGGAACTGGACACTTTTGAAGGAAACATCACAAAGCAACTGGTGAAGAGG  1746

Query 1561  CTCACATCTGCAGAGGTGCCAATGGCCACAGACAGGCTGCTCTCTGAGGGTTCTGTTGGTGGAGAATCTGAAGG  1634
            |||||.||.||.||||.|||..|..|.||.||||.|||..|||.|||.||.|||||||||.|.||.|||| |||
Sbjct 1747  CTCACCTCGGCTGAGGGGCCCGTCACTACTGACAAGCTTTTCTTTGAAGGCTCTGTTGGTAGCGAGTCTG-AGG  1819

Query 1635  CT-GCAGATCCTTTCTAGATGGAAGCTTAGAGGATGCTTTTAATGGGCTTTTACTTGCATTAGAACCACATAAA  1707
            || ||.|.||||||||.|||||.|||.|.||.|||||.||.|||||.||.||.|||||||||||.|||||.||.
Sbjct 1820  CTGGCCGGTCCTTTCTGGATGGCAGCCTGGAAGATGCCTTCAATGGACTCTTCCTTGCATTAGACCCACACAAG  1893

Query 1708  GAGCAGTATAAAGAGTTTCAGGATCTGAACCAAGAAGTCATGAATTTGGANGATATTCTAAAA---AAG-----  1773
            .|||||||.||||||||.||||||||||||||||||||||...|.|||||.|||.||||.|||   |||     
Sbjct 1894  AAGCAGTACAAAGAGTTCCAGGATCTGAACCAAGAAGTCACTCACTTGGATGATGTTCTCAAATGCAAGCCGGC  1967

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 1968  TGGCAGCCGCAGCAGGTCTTCCAGCCTAAGTCTGACGGTTGAGAGTGCTTTAGAAAGCTTTGATTTCCTCAACA  2041

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2042  CCTCTGACTTTGACGAAGAGGAAGAGGATGGCGATGACGTCTGCCACGTTGGAGGAGGCGCAGACTCCGTGTTT  2115

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2116  TCAGATACTGAGACTGAGAAGAGTGGTTACAGGTCAGTTCACCCGGAAGCCAGGGGTCACCTTAGCGAGGCTCT  2189

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2190  GACTGAAGACACAGGTGTAGGCACCAGTGTGGCAGGAAGCCCGCTCCCACTCACCACAGGAAATGAGAGCCTGG  2263

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2264  ACATCACCATAGTCAAACATCTACAATACTGCACCCAGCTCATCCAGCAAATCGTCTTCTCTAGCAAAACCCCC  2337

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2338  TTTGTGGCAAGAAGTCTCTTGGAGAAGCTGTCGAGGCAGGTCCTTGTGATGCAGAAGCTGGCAGCCGTGAGTGA  2411

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2412  CGAGAACCTCGGGAACATCACCTCTGTGGTGGAAGCCATACCAGAATTTCACAAAAAGCTCTCCTTGCTGGCCT  2485

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2486  TCTGGACCAAATGCTGCAGCCCCAGCGGGGTCTACCACAGCTCCGCTGCCCGCCTCATCAAGCAGCTGGAGGCC  2559

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2560  AGCTTCGCCAGAAGCATCAACAAAGACTATCCAGGACTGGCAGAGCCAGTGTTTAGAACCCTGGTGTCCCAAAT  2633

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2634  CCTGGACCGAGCTGAACCTCTCCTTTCCTCCAGCCTCTCGTCGGAAGTCATCACTGTCTTCCAGTACTACAGCT  2707

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2708  TCTTCACCAGCCACGGTGTGAGTGACCTGGAGACTTACCTGGGCCAGCTAACCAGGCAAGTTGCCATGGTTCAG  2781

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2782  ACTCTGCAGTCACTGAGAGATGAGAAACTGCTGCAGACTATGAGCGACCTTGCACCCAGCAACCTCCCCGCTCA  2855

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2856  ACAGGAAGTCCTCAGGACGCTGGCCCTGCTGCTCACCAGGGATGACAATGAGGTCAGCGAAGCTGTGACACTCT  2929

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2930  ACTTGGCAGCAGCCTCCAAAAATGAGCACTTCAGAGAAAAGGCCTTGCTCTATTATTGCGAAGCACTAACGAAG  3003

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 3004  GCCAATCTCCAGCTACAGAAGGCAGCATGTCTGGCCCTAAAGAGCCTGGAGGCCACCGAAAGCATTAAAATGCT  3077

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 3078  AGTGACGTTGTGTCAGTCTGACACTGAAGAAATCAGAACCGTGGCCTCGGAAACCCTCCTCTCTCTTGGAGAAG  3151

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 3152  ACGGGCGACTGGCGTACGAGCAATTAGACAAATTCCCTCGAGATTGTGTTAAAGTGGGAGGTCGTCATGGAACC  3225

Query 1774  ------------------  1773
                              
Sbjct 3226  GAAGTTGCCACAGCCTTT  3243

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