Nucleotide Global Alignment

Description

Query:
ccsbBroad304_07481
Subject:
XM_006516589.3
Aligned Length:
3292
Identities:
1443
Gaps:
1604

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGTGTTGCCTTCGCGATTGCACTGGATCAGAAACAGGCCATGGAGGGACAGGATCCGGAGGCGGCGGCTCCA  74

Query    1  ----------------------------ATGTTGGTAGGATCCCAGTCTTTTTCGCCTGGAGGGCCCAATGGGA  46
                                        |||.||||.|||||||||||.||.||.|||||.|||||||||||.|
Sbjct   75  CCGACTGCCAACCAGACTCCCAGAAATCATGCTGGTGGGATCCCAGTCCTTCTCTCCTGGCGGGCCCAATGGCA  148

Query   47  TCATTAGAAGCCAGTCCTTTGCGGGTTTCAGCGGCCTCCAGGAAAGGCGATCCAGGTGTAACTCCTTCATTGAA  120
            ||||..|.|||||||||||.||.||||||||.||.||.|||||||||||.||||||||||||||||||||||||
Sbjct  149  TCATCCGGAGCCAGTCCTTCGCAGGTTTCAGTGGGCTGCAGGAAAGGCGGTCCAGGTGTAACTCCTTCATTGAA  222

Query  121  AATTCCTCCGCTCTCAAGAAGCCTCAGGCCAAACTGAAGAAAATGCACAATTTAGGCCACAAAAACAACAATCC  194
            |||.||||.|||||||||||||||||||||||.||||||||||||||.|||.|.||.||||||||.|||||..|
Sbjct  223  AATGCCTCGGCTCTCAAGAAGCCTCAGGCCAAGCTGAAGAAAATGCATAATCTTGGACACAAAAATAACAACAC  296

Query  195  CCCCAAAGAGCCTCAGCCTAAAAGGGTGGAAGAAGTCTACAGGGCCTTGAAAAATGGACTTGATGAATATCTGG  268
            .|||||.|||||||||||.||.||.|||||.||.||||||.||||||||||.||.||.||||||||.||.||||
Sbjct  297  TCCCAAGGAGCCTCAGCCGAAGAGAGTGGAGGAGGTCTACCGGGCCTTGAAGAACGGGCTTGATGAGTACCTGG  370

Query  269  AGGTTCACCAGACGGAGCTGGACAAGTTGACAGCTCAGTTAAAAGATATGAAAAGAAACTCTCGCCTGGGTGTA  342
            ||.||||||||||||||||||||||.|||||.|||||.||||||||||||||.||||||||||||||||||||.
Sbjct  371  AGTTTCACCAGACGGAGCTGGACAAATTGACTGCTCAATTAAAAGATATGAAGAGAAACTCTCGCCTGGGTGTG  444

Query  343  CTGTATGACCTAGACAAGCAAATTAAAACAATTGAAAGATACATGAGACGCCTGGAGTTTCATATAAGTAAGGT  416
            |||||||||||||||                                                      |||||
Sbjct  445  CTGTATGACCTAGAC------------------------------------------------------AAGGT  464

Query  417  AGATGAACTCTATGAAGCTTATTGTATCCAGCGACGCCTCCAGGATGGTGCCAGCAAAATGAAGCAAGCCTTCG  490
            |||.||.|||||||||||.|||||||||||.||.||.|||||.|||||||||||||||||||||||||||||||
Sbjct  465  AGACGAGCTCTATGAAGCCTATTGTATCCAACGGCGTCTCCAAGATGGTGCCAGCAAAATGAAGCAAGCCTTCG  538

Query  491  CAACATCCCCTGCCAGCAAAGCTGCCCGGGAGAGTCTGACAGAGATCAATCGGAGCTTCAAGGAGTACACAGAG  564
            |.||.||||||||||||||.||||||||||||||||||.|.||||||||.||.||||.||||||.|||||.|||
Sbjct  539  CGACGTCCCCTGCCAGCAAGGCTGCCCGGGAGAGTCTGTCTGAGATCAACCGCAGCTACAAGGAATACACGGAG  612

Query  565  AATATGTGCACCATTGAAGTGGAGCTAGAGAATCTGCTGGGAGAATTCTCCATCAAGATGAAAGGTCTGGCTGG  638
            ||.|||||..|||||||||.||||.|.||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct  613  AACATGTGTGCCATTGAAGCGGAGTTGGAGAGTCTGCTGGGAGAATTCTCCATCAAGATGAAAGGTCTGGCTGG  686

Query  639  CTTTGCACGCCTCTGTCCTGGAGATCAATATGAAATTTTCATGAAGTATGGCCGGCAGCGGTGGAAACTGAAAG  712
            ||||||.||||||||||||||||||||||||||||||||||||||||||||.||||||.|||||||||||||.|
Sbjct  687  CTTTGCCCGCCTCTGTCCTGGAGATCAATATGAAATTTTCATGAAGTATGGTCGGCAGAGGTGGAAACTGAAGG  760

Query  713  GCAAAATAGAAGTAAATGGCAAGCAGAGCTGGGATGGAGAAGAAACAGTTTTTCTGCCCCTGATAGTTGGGTTC  786
            |||||||||||||.|||||.||.||||||||||||||||.||||||.||.||.||||||||.||||||||||||
Sbjct  761  GCAAAATAGAAGTGAATGGTAAACAGAGCTGGGATGGAGCAGAAACCGTCTTCCTGCCCCTCATAGTTGGGTTC  834

Query  787  ATCTCCATCAAGGTCACGGAGCTCAAAGGGCTAGCAACTCACATCCTGGTAGGTAGCGTGACCTGTGAGACCAA  860
            ||.||.|||||||||||.||.||||||||.||.||.|||||||||||||||||.||.||||||||.||||||||
Sbjct  835  ATTTCAATCAAGGTCACAGAACTCAAAGGACTGGCGACTCACATCCTGGTAGGCAGTGTGACCTGCGAGACCAA  908

Query  861  AGAGCTGTTTGCAGCCCGACCTCAGGTAGTGGCTGTCGACATCAATGACCTTGGTACCATCAAACTGAACCTGG  934
            |||||||||||||||||||||.|||||.||||||||.|||||||||||||||||||||||||||||||||||||
Sbjct  909  AGAGCTGTTTGCAGCCCGACCCCAGGTGGTGGCTGTTGACATCAATGACCTTGGTACCATCAAACTGAACCTGG  982

Query  935  AAATCACCTGGTATCCATTTGACGTGGAGGACATGACCGCATCCTCAGGCGCTGGGAACAAGGCAGCAGCCCTT  1008
            ||||||||||||||||.||||||||||||||||..|||.||||.||.|||.|||||||||||.||||.||.||.
Sbjct  983  AAATCACCTGGTATCCCTTTGACGTGGAGGACACAACCCCATCGTCGGGCCCTGGGAACAAGACAGCTGCTCTC  1056

Query 1009  CAGAGGAGAATGTCCATGTACAGCCAGGGTACCCCGGAAACGCCCACCTTCAAAGACCACTCCTTCTT------  1076
            |||.|.||.||||||||||||||||||||.|||||.|||||.||.||||||||||||||.||||||||      
Sbjct 1057  CAGCGAAGGATGTCCATGTACAGCCAGGGCACCCCAGAAACACCTACCTTCAAAGACCAGTCCTTCTTTAGATG  1130

Query 1077  --------------------------------------------------------------------------  1076
                                                                                      
Sbjct 1131  GTTGCGGCTGTCTGTCTTGAGTGCCTTGCGAGACACTTTCTTTGCCACGTTGCACCACAACCACTCTGTCGGTG  1204

Query 1077  ----------------------------------------------TTCAAATCTACCTGATGACATCTTTGAA  1104
                                                          |||||||||.||.||||||||||||||.
Sbjct 1205  ACCTGCCTTCCCTCAGCCTGAACCCCAAGGCCCTGCTAGAATTCTATTCAAATCTGCCAGATGACATCTTTGAG  1278

Query 1105  AATGGAAAGGCAGCCGAGGAGAAAATGCCACTGTCGCTCAGCTTCAGTGACCTGCCCAACGGGGACTGCGCCCT  1178
            |.|||||||||.||.||||||||||.|||||||||.|||||||||||||||||||...|.||.|||||.|.|.|
Sbjct 1279  AGTGGAAAGGCTGCAGAGGAGAAAAGGCCACTGTCCCTCAGCTTCAGTGACCTGCAGGATGGAGACTGTGTCTT  1352

Query 1179  CACCTCCCACTCAACAGGCTCCCCTTCCA------ACTCAACAAATCCAGAAATTACCATCACCCCTGCGGAGT  1246
            |||||||..||||.|...||||||.||||      |||||.|..|||||||.||||||||||||||.||.|||.
Sbjct 1353  CACCTCCAGCTCAGCCACCTCCCCCTCCAGTTCACACTCAGCCCATCCAGAGATTACCATCACCCCCGCAGAGC  1426

Query 1247  TTAACCTCAGCAGCTTGGCCTCCCAGAATGAGGGTATGGATGACACCAGCTCAGCATCTTCCAGGAACTCCCTG  1320
            |||.||.|||||||.||.||||.||.||||||||.|..||.||||.|||||||||.|||||||||||.|||.||
Sbjct 1427  TTACCCACAGCAGCCTGTCCTCACAAAATGAGGGCACCGAGGACAGCAGCTCAGCGTCTTCCAGGAATTCCTTG  1500

Query 1321  GGAGAAGGCCAAGAGCCAAAGTCACACCTGAAGGAGGAAGACCCAGAGGAGCCCAGAAAACCTGCCTCGGCCCC  1394
            ||.||.|.|||.|||||.|||||.|||| .||.|||  .||..|.|..||||||.|.||.||.|          
Sbjct 1501  GGTGAGGACCATGAGCCCAAGTCCCACC-CAAAGAG--TGATACGGTAGAGCCCGGGAAGCCGG----------  1561

Query 1395  ATCTGAGGCTTGCCGCCGACAGTCCTCAGGTGCTGGGGCTGAGCACCTGTTCCTTGAGAATGATGTTGCAGAAG  1468
              .||.||||        |||      |||| ||||..|.|||..||||||.||.||||.|..|||.||.||.|
Sbjct 1562  --GTGTGGCT--------ACA------AGGT-CTGGTACCGAGAGCCTGTTTCTGGAGAGTAGTGTGGCCGAGG  1618

Query 1469  CACTTCTGCAAGAGTCTGAGGAGGCCTCTGAGCTCAAGCCTGTGGAACTGGACACTTCGGAAGGAAACATCACA  1542
            |.||.|||||.||.||.||.||||||||||||||||||||.||||||||||||||||..|||||||||||||||
Sbjct 1619  CTCTCCTGCAGGAATCGGATGAGGCCTCTGAGCTCAAGCCCGTGGAACTGGACACTTTTGAAGGAAACATCACA  1692

Query 1543  AAGCAGCTGGTCAAGAGGCTCACATCTGCAGAGGTGCCAATGGCCACAGACAGGCTGCTCTCTGAGGGTTCTGT  1616
            |||||.|||||.|||||||||||.||.||.||||.|||..|..|.||.||||.|||..|||.|||.||.|||||
Sbjct 1693  AAGCAACTGGTGAAGAGGCTCACCTCGGCTGAGGGGCCCGTCACTACTGACAAGCTTTTCTTTGAAGGCTCTGT  1766

Query 1617  TGGTGGAGAATCTGAAGGCT-GCAGATCCTTTCTAGATGGAAGCTTAGAGGATGCTTTTAATGGGCTTTTACTT  1689
            ||||.|.||.|||| ||||| ||.|.||||||||.|||||.|||.|.||.|||||.||.|||||.||.||.|||
Sbjct 1767  TGGTAGCGAGTCTG-AGGCTGGCCGGTCCTTTCTGGATGGCAGCCTGGAAGATGCCTTCAATGGACTCTTCCTT  1839

Query 1690  GCATTAGAACCACATAAAGAGCAGTATAAAGAGTTTCAGGATCTGAACCAAGAAGTCATGAATTTGGANGATAT  1763
            ||||||||.|||||.||..|||||||.||||||||.||||||||||||||||||||||...|.|||||.|||.|
Sbjct 1840  GCATTAGACCCACACAAGAAGCAGTACAAAGAGTTCCAGGATCTGAACCAAGAAGTCACTCACTTGGATGATGT  1913

Query 1764  TCTAAAA---AAG-------------------------------------------------------------  1773
            |||.|||   |||                                                             
Sbjct 1914  TCTCAAATGCAAGCCGGCTGGCAGCCGCAGCAGGTCTTCCAGCCTAAGTCTGACGGTTGAGAGTGCTTTAGAAA  1987

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 1988  GCTTTGATTTCCTCAACACCTCTGACTTTGACGAAGAGGAAGAGGATGGCGATGACGTCTGCCACGTTGGAGGA  2061

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2062  GGCGCAGACTCCGTGTTTTCAGATACTGAGACTGAGAAGAGTGGTTACAGGTCAGTTCACCCGGAAGCCAGGGG  2135

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2136  TCACCTTAGCGAGGCTCTGACTGAAGACACAGGTGTAGGCACCAGTGTGGCAGGAAGCCCGCTCCCACTCACCA  2209

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2210  CAGGAAATGAGAGCCTGGACATCACCATAGTCAAACATCTACAATACTGCACCCAGCTCATCCAGCAAATCGTC  2283

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2284  TTCTCTAGCAAAACCCCCTTTGTGGCAAGAAGTCTCTTGGAGAAGCTGTCGAGGCAGGTCCTTGTGATGCAGAA  2357

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2358  GCTGGCAGCCGTGAGTGACGAGAACCTCGGGAACATCACCTCTGTGGTGGAAGCCATACCAGAATTTCACAAAA  2431

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2432  AGCTCTCCTTGCTGGCCTTCTGGACCAAATGCTGCAGCCCCAGCGGGGTCTACCACAGCTCCGCTGCCCGCCTC  2505

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2506  ATCAAGCAGCTGGAGGCCAGCTTCGCCAGAAGCATCAACAAAGACTATCCAGGACTGGCAGAGCCAGTGTTTAG  2579

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2580  AACCCTGGTGTCCCAAATCCTGGACCGAGCTGAACCTCTCCTTTCCTCCAGCCTCTCGTCGGAAGTCATCACTG  2653

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2654  TCTTCCAGTACTACAGCTTCTTCACCAGCCACGGTGTGAGTGACCTGGAGACTTACCTGGGCCAGCTAACCAGG  2727

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2728  CAAGTTGCCATGGTTCAGACTCTGCAGTCACTGAGAGATGAGAAACTGCTGCAGACTATGAGCGACCTTGCACC  2801

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2802  CAGCAACCTCCCCGCTCAACAGGAAGTCCTCAGGACGCTGGCCCTGCTGCTCACCAGGGATGACAATGAGGTCA  2875

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2876  GCGAAGCTGTGACACTCTACTTGGCAGCAGCCTCCAAAAATGAGCACTTCAGAGAAAAGGCCTTGCTCTATTAT  2949

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2950  TGCGAAGCACTAACGAAGGCCAATCTCCAGCTACAGAAGGCAGCATGTCTGGCCCTAAAGAGCCTGGAGGCCAC  3023

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 3024  CGAAAGCATTAAAATGCTAGTGACGTTGTGTCAGTCTGACACTGAAGAAATCAGAACCGTGGCCTCGGAAACCC  3097

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 3098  TCCTCTCTCTTGGAGAAGACGGGCGACTGGCGTACGAGCAATTAGACAAATTCCCTCGAGATTGTGTTAAAGTG  3171

Query 1774  ------------------------------------  1773
                                                
Sbjct 3172  GGAGGTCGTCATGGAACCGAAGTTGCCACAGCCTTT  3207

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.