Nucleotide Global Alignment

Description

Query:
ccsbBroad304_07959
Subject:
NM_001306204.1
Aligned Length:
2902
Identities:
2173
Gaps:
392

Alignment

Query    1  ATGGCGTCAAACTCAACTAAGTCTTTCCTGGCAGATGCCGGCTATGGCGAACAGGAACTGGATGCCAACTCTGC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CCTTATGGAATTGGACAAAGGCCTAAGATCTGGCAAACTTGGTGAACAGTGTGAAGCAGTTGTTCGCTTTCCCA  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  GACTTTTTCAGAAGTATCCATTCCCTATTCTTATCAATTCTGCATTCCTAAAGTTAGCTGATGTTTTCAGAGTT  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  GGAAATAATTTCCTGAGGCTATGTGTTCTTAAAGTTACCCAACAAAGTGAGAAACATTTGGAGAAGATTCTAAA  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  TGTGGATGAATTTGTGAAGAGAATTTTTTCTGTGATTCATAGTAATGATCCTGTGGCAAGAGCCATCACCCTCC  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  GGATGTTGGGAAGTCTGGCATCAATAATTCCTGAGAGGAAGAATGCTCATCATAGTATTCGTCAGAGTTTAGAT  444
              |||||||||||||||||.||.||.||.|||||||||||||||||.|||||.|||||.||.||||||.|.|||
Sbjct    1  --ATGTTGGGAAGTCTGGCGTCCATCATCCCTGAGAGGAAGAATGCCCATCACAGTATCCGCCAGAGTCTGGAT  72

Query  445  TCACATGATAATGTAGAAGTTGAAGCTGCTGTTTTTGCTGCTGCAAACTTCTCTGCACAGTCAAAGGATTTTGC  518
            ||.|||||||||||||||||.|||||||||||||||||.||.||||||||||||||||||||.|||||||||||
Sbjct   73  TCCCATGATAATGTAGAAGTCGAAGCTGCTGTTTTTGCAGCCGCAAACTTCTCTGCACAGTCGAAGGATTTTGC  146

Query  519  TGTAGGAATCTGTAACAAAATCAGTGAAATGATTCAAGGTTTAGCGACACCAGTAGACTTGAAGCTAAAATTGA  592
            |||.||.||||||||||||||||||||||||||||||||.|||||.|||||.||.|||.|||||||.||..|||
Sbjct  147  TGTGGGGATCTGTAACAAAATCAGTGAAATGATTCAAGGCTTAGCTACACCGGTGGACCTGAAGCTGAAGCTGA  220

Query  593  TACCCATTCTACAGCACATGCACCATGATGCAATCTTGGCTTCCAGTGCTCGTCAGCTTTTACAACAGCTGGTC  666
            |.||.||.||.||||||||||||||.|||||..||.||||.|||||.||.||.|||||..|.||.|||||||||
Sbjct  221  TCCCGATCCTGCAGCACATGCACCACGATGCCCTCCTGGCCTCCAGCGCCCGCCAGCTCCTGCAGCAGCTGGTC  294

Query  667  ACATCCTATCCGTCCACCAAAATGGTGATTGTGTCTTTGCACACTTTCACTCTGCTTGCAGCGTCATCTTTGGT  740
            ||.|||||.||.||||||||.|||||.||.||||||.|||||||||||||||||||.|||||.||.||||||||
Sbjct  295  ACGTCCTACCCCTCCACCAAGATGGTCATCGTGTCTCTGCACACTTTCACTCTGCTGGCAGCCTCCTCTTTGGT  368

Query  741  TGATACACCTAAGCAGATTCAGCTTCTGTTGCAGTATTTGAAGAATGATCCCAGGAAGGCAGTAAAGAGACTTG  814
            |||.|||||.||||||||||||||||||.|||||||||||||||||||.||||||||.||.||.||||||||||
Sbjct  369  TGACACACCCAAGCAGATTCAGCTTCTGCTGCAGTATTTGAAGAATGACCCCAGGAAAGCCGTGAAGAGACTTG  442

Query  815  CTATTCAAGATCTGAAATTACTTGCTAATAAAACACCACATACTTGGAGTAGGGAGAATATTCAGGCACTTTGT  888
            ||.||||.||||||||..|.|||||||.|||.||||||||.||.|||||||.||||||||||||||||||.|||
Sbjct  443  CTGTTCAGGATCTGAAGCTGCTTGCTAGTAAGACACCACACACGTGGAGTAAGGAGAATATTCAGGCACTCTGT  516

Query  889  GAGTGTGCCCTCCAGACTCCTTATGACAGCTTAAAACTAGGGATGTTGTCTGTCCTTTCCACACTATCAGGGAC  962
            ||||||||.||.||.|||||||||||||||||.|||||.|||||||||||||||||.||.||.||.|||||.||
Sbjct  517  GAGTGTGCACTGCACACTCCTTATGACAGCTTGAAACTCGGGATGTTGTCTGTCCTCTCTACGCTGTCAGGAAC  590

Query  963  CATCGCCATCAAACATTACTTCAGTATAGTTCCAGGAAATGTGAGTTCTTCTCCCAGATCTTCTGATTTAGTCA  1036
            |||.|||||.|||||||||||||||.|||||||.||||||||..|.|||||.||||||||||||||||||||||
Sbjct  591  CATTGCCATTAAACATTACTTCAGTGTAGTTCCCGGAAATGTAGGCTCTTCCCCCAGATCTTCTGATTTAGTCA  664

Query 1037  AATTAGCCCAAGAGTGCTGTTACCATAATAACAGGGGCATTGCAGCTCATGGAGTTAGAGTCCTAACTAATATA  1110
            |||||||.|||||.|||||||||||||..|||||||||||.||||||||||||||.|||||.||||||||||||
Sbjct  665  AATTAGCTCAAGAATGCTGTTACCATAGCAACAGGGGCATCGCAGCTCATGGAGTGAGAGTGCTAACTAATATA  738

Query 1111  ACTGTTTCTTGTCAAGAAAAGGATCTTTTGGCACTGGAACAAGATGCTGTCTTTGGCCTGGAATCCCTACTGGT  1184
            ||.||.||||||||||||||.|||||.|||.|||||||.||||||||||||||.||||||||||||||.|||||
Sbjct  739  ACAGTGTCTTGTCAAGAAAAAGATCTCTTGTCACTGGAGCAAGATGCTGTCTTCGGCCTGGAATCCCTTCTGGT  812

Query 1185  ACTTTGTAGTCAAGATGATAGTCCAGGTGCTCAGGCCACTTTAAAGATTGCTCTAAACTGTATGGTGAAGTTGG  1258
            .|||||||||||||||||.||||||||||||||..|||||.|.||||.||||||.|.|||||||||||||.|||
Sbjct  813  GCTTTGTAGTCAAGATGACAGTCCAGGTGCTCAATCCACTGTGAAGAGTGCTCTCAGCTGTATGGTGAAGCTGG  886

Query 1259  CCAAGGGCAGGCCCCGTCTTAGCCAGTCAGTAGTTGAGACCTTGTTGACTCAATTGCACAGTGCTCAAGACGCT  1332
            ||||||||.||||||.|||.|||..||||||.|||||.||..||.|.|||||..|||||||..||||.||.|||
Sbjct  887  CCAAGGGCCGGCCCCATCTGAGCAGGTCAGTGGTTGACACTCTGCTAACTCAGCTGCACAGCTCTCAGGATGCT  960

Query 1333  GCCCGGATTTTGATGTGCCATTGCCTGGCAGCCATTGCCATGCAACTGCCGGTGCTGGGTGATGGGATGCTTGG  1406
            ||||||||..|.||||||||.|||||||||||||||||||||||.||.|||||.|||||.|||||.||||||||
Sbjct  961  GCCCGGATCCTCATGTGCCACTGCCTGGCAGCCATTGCCATGCAGCTCCCGGTACTGGGCGATGGAATGCTTGG  1034

Query 1407  TGACCTCATGGAGCTGTACAAGGTGATTGGACGATCAGCCACAGACAAGCAACAAGAACTTCTGGTGAGTTTGG  1480
            .||||||.|||||||.||||||||||||||||||||||||||||||||||||||.|||||||||||.|||||||
Sbjct 1035  GGACCTCGTGGAGCTCTACAAGGTGATTGGACGATCAGCCACAGACAAGCAACAGGAACTTCTGGTAAGTTTGG  1108

Query 1481  CTACTGTGATTTTTGTTGCAAGTCAGAAGGCATTGTCTGTGGAAAGT-AAGGCAGTAATTAAGCAGCAGCTTGA  1553
            |||||||||||||.||.||.||.|||||.||||||||||..| |||| |||||.|||||.||||||||||||||
Sbjct 1109  CTACTGTGATTTTCGTAGCCAGCCAGAAAGCATTGTCTGCAG-AAGTGAAGGCGGTAATCAAGCAGCAGCTTGA  1181

Query 1554  AAGTGTCTCCAATGGATGGACTGTATACCGTATTGCCAGACAGGCTTCCAGAATGGGTAATCATGACATGGCCA  1627
            |||.|||||||.|||.|||||.||.|||||.||||||||.|||||||||||||||||.||.||.||||||||..
Sbjct 1182  AAGCGTCTCCAGTGGGTGGACCGTGTACCGGATTGCCAGGCAGGCTTCCAGAATGGGCAACCACGACATGGCTC  1255

Query 1628  AAGAGCTTTATCAGAGTTTGCTGACTCAGGTTGCCTCAGAACATTTCTACTTCTGGCTAAATAGTTTGAAGGAG  1701
            .|||||||||.||||||||||||||.||||||||.||||||||.||||||||||||||.||.|||.||||||||
Sbjct 1256  GAGAGCTTTACCAGAGTTTGCTGACGCAGGTTGCATCAGAACACTTCTACTTCTGGCTGAACAGTCTGAAGGAG  1329

Query 1702  TTTTCACATGCAGAACAGTGTCTCACTGGGTTGCAAGAGGAAAATTATAGTTCAGCACTTTCTTGCATTGCTGA  1775
            ||.||.|||||.||.||||||||.||||||.||||.|||||.|..|..||.|||||||||||.|||||||||||
Sbjct 1330  TTCTCCCATGCGGAGCAGTGTCTGACTGGGCTGCAGGAGGATAGCTTCAGCTCAGCACTTTCCTGCATTGCTGA  1403

Query 1776  ATCTTTAAAATTCTATCACAAAGGGATTGCTTCCTTAACAGCAGCTAGTACACCACTGAATCCTTTAAGCTTTC  1849
            .|||||.||.|||||.|||||||||||.||.|||.||||.||.||.||.|||||.|||||||||||.|||||||
Sbjct 1404  GTCTTTGAAGTTCTACCACAAAGGGATCGCCTCCCTAACGGCCGCCAGCACACCGCTGAATCCTTTGAGCTTTC  1477

Query 1850  AGTGTGAATTTGTAAAACTCAGGATTGACCTTTTACAAGCCTTCTCTCAACTTATCTGTACTTGTAATAGCCTG  1923
            |||||||.||||||||.|||.||||.||.||..|.|||||||||||.||.||.||.||.||.|||||.||||||
Sbjct 1478  AGTGTGAGTTTGTAAAGCTCCGGATCGATCTCCTCCAAGCCTTCTCGCAGCTCATTTGCACGTGTAACAGCCTG  1551

Query 1924  AAGACAAGCCCACCACCTGCAATTGCCACAACAATTGCCATGACCTTAGGAAATGACCTCCAGAGGTGTGGTCG  1997
            |||||||||||.||.|||||.||.|||||.||.||.|||||||||||||||||.||.||.||||||||.||.||
Sbjct 1552  AAGACAAGCCCTCCCCCTGCCATCGCCACCACCATCGCCATGACCTTAGGAAACGATCTTCAGAGGTGCGGCCG  1625

Query 1998  CATCTCCAATCAGATGAAACAGTCCATGGAAGAATTTCGAAGCCTTGCTTCTCGATATGGAGATCTTTACCAGG  2071
            .|||||||||||||||||.|||||||||||||||||.||||||||||||||.||.||..|||||||.||.||||
Sbjct 1626  GATCTCCAATCAGATGAAGCAGTCCATGGAAGAATTCCGAAGCCTTGCTTCCCGGTACAGAGATCTCTATCAGG  1699

Query 2072  CATCTTTTGATGCTGACTCAGCAACTTTGAGGAATGTTGAACTACAGCAGCAGAGCTGTTTACTGATATCTCAT  2145
            ||||.||||||||.||.||.||.|||.||||||||||.|||||.||||||||||||||.|||||||||.|||||
Sbjct 1700  CATCCTTTGATGCAGATTCGGCCACTCTGAGGAATGTAGAACTCCAGCAGCAGAGCTGCTTACTGATAGCTCAT  1773

Query 2146  GCAATAGAAGCCCTGATTTTGGATCCAGAATCAGCAAGTTTCCAGGAATATGGATCTACTGGAACAGCCCATGC  2219
            ||.||||||||||||.||||||||||.|||||||||||.||||||||.|||||.||.||.||..|.|||||.||
Sbjct 1774  GCCATAGAAGCCCTGGTTTTGGATCCTGAATCAGCAAGCTTCCAGGAGTATGGGTCCACGGGCGCTGCCCACGC  1847

Query 2220  TGATAGTGAATATGAAAGAAGAATGATGTCTGTATATAATCATGTCTTGGAGGAGGTAGAATCACTCAATCGGA  2293
            .||.|||||.|||||.||||||||||||||.||.||.|.||..|||.|.||||||||.||.||.||.||.||||
Sbjct 1848  CGACAGTGAGTATGAGAGAAGAATGATGTCCGTGTACAGTCGCGTCCTAGAGGAGGTGGAGTCGCTTAACCGGA  1921

Query 2294  AATATACCCCTGTTTCTTATATGCACACAGCATGCCTCTGCAATGCCATCATTGCTTTGCTGAAAGTTCCCCTT  2367
            |.|||.||||.|||||.||.||||||||||||||||||||||||||||||||.|||.|||||||||||||.|||
Sbjct 1922  AGTATGCCCCAGTTTCCTACATGCACACAGCATGCCTCTGCAATGCCATCATCGCTCTGCTGAAAGTTCCTCTT  1995

Query 2368  TCTTTCCAGAGATATTTTTTCCAGAAACTACAGTCTACCAGCATCAAGCTTGCTCTGTCACCATCGCCCCGGAA  2441
            ||.||.||||||||.|||||||||||||||||||||||||||||||||||||||||||||||.||.|||||||.
Sbjct 1996  TCATTTCAGAGATACTTTTTCCAGAAACTACAGTCTACCAGCATCAAGCTTGCTCTGTCACCTTCTCCCCGGAG  2069

Query 2442  TCCTGCAGAGCCCATTGCTGTCCAGAATAACCAGCAGCTGGCGCTAAAGGTAGAGGGAGTGGTTCAGCACGGAT  2515
            .||||||||||||||||||||.||||||||||||||||||||.|||||||||||.||.||.|||||||||||||
Sbjct 2070  CCCTGCAGAGCCCATTGCTGTGCAGAATAACCAGCAGCTGGCACTAAAGGTAGAAGGCGTTGTTCAGCACGGAT  2143

Query 2516  CTAAACCAGGACTCTTCCGCAAAATTCAGTCTGTCTGTCTGAATGTTTCTTCCACACTGCAGAGTAAATCTGGA  2589
            ||||||||||.||||||||||.|.||||||||||.||||||||||||||.|||||||||||||||||||||||.
Sbjct 2144  CTAAACCAGGCCTCTTCCGCAGAGTTCAGTCTGTGTGTCTGAATGTTTCCTCCACACTGCAGAGTAAATCTGGC  2217

Query 2590  CAAGACTACAAGATACCCATTGACAACATGACCAATGAGATGGAGCAAAGGGTTGAACCTCATAATGATTACTT  2663
            ||||||||||||||.||||||||.|.|||||||||||||||||||||.||||||||.||.||||||||||||||
Sbjct 2218  CAAGACTACAAGATTCCCATTGATAGCATGACCAATGAGATGGAGCAGAGGGTTGAGCCACATAATGATTACTT  2291

Query 2664  CAGTACTCAATTTCTGTTGAACTTTGCTATCCTTGGAACACACAACATTACAGTGGAATCTTCTGTGAAAGATG  2737
            |||.||.||.||.|||||||||||||||.||||||||||.||||.|||.||||||||.||.||.||||.|||||
Sbjct 2292  CAGCACCCAGTTCCTGTTGAACTTTGCTGTCCTTGGAACGCACAGCATCACAGTGGAGTCATCGGTGAGAGATG  2365

Query 2738  CCAATGGTATAGTATGGAAGACTGGTCCCAGAACTACCATATTTGTAAAATCCCTGGAAGACCCTTATTCCCAG  2811
            |||||||.||.||.|||||||||||.|||||||||||.||.|||||.|||||||||||||||||.||.||||||
Sbjct 2366  CCAATGGCATCGTCTGGAAGACTGGCCCCAGAACTACTATGTTTGTCAAATCCCTGGAAGACCCCTACTCCCAG  2439

Query 2812  CAAATTCGCTTACAACAGCAGCAAGCCCAGCAGCCATTACA---------------GCAGCAGCAGCAACGCAA  2870
            ||.||||||   |.|||||||||.|||||||||||.||.||               |||||.|||||..||||.
Sbjct 2440  CAGATTCGC---CTACAGCAGCAGGCCCAGCAGCCTTTGCAGCCACAGCCACAGCCGCAGCCGCAGCCTCGCAG  2510

Query 2871  TGCCTACACACGGTTT  2886
            |||||||||.||||||
Sbjct 2511  TGCCTACACCCGGTTT  2526

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.