Nucleotide Global Alignment

Description

Query:
ccsbBroad304_07959
Subject:
NM_178632.6
Aligned Length:
2902
Identities:
2494
Gaps:
20

Alignment

Query    1  ATGGCGTCAAACTCAACTAAGTCTTTCCTGGCAGATGCCGGCTATGGCGAACAGGAACTGGATGCCAACTCTGC  74
            |||||||||||||||||.|||||.||||||||.|||||||||||||||||||||||.|||||.||.||.||.||
Sbjct    1  ATGGCGTCAAACTCAACCAAGTCGTTCCTGGCCGATGCCGGCTATGGCGAACAGGAGCTGGACGCTAATTCCGC  74

Query   75  CCTTATGGAATTGGACAAAGGCCTAAGATCTGGCAAACTTGGTGAACAGTGTGAAGCAGTTGTTCGCTTTCCCA  148
            .|||||||||.||||||||||.||.||.|||||||||||.||.||.||||||||.|||||.||.||||||||||
Sbjct   75  TCTTATGGAACTGGACAAAGGACTGAGGTCTGGCAAACTCGGGGAGCAGTGTGAGGCAGTCGTGCGCTTTCCCA  148

Query  149  GACTTTTTCAGAAGTATCCATTCCCTATTCTTATCAATTCTGCATTCCTAAAGTTAGCTGATGTTTTCAGAGTT  222
            |.|||||.||||||||.||.||||||||.||.|||||.||.|||||||||||||||||||||||||||||||||
Sbjct  149  GGCTTTTCCAGAAGTACCCGTTCCCTATCCTCATCAACTCAGCATTCCTAAAGTTAGCTGATGTTTTCAGAGTT  222

Query  223  GGAAATAATTTCCTGAGGCTATGTGTTCTTAAAGTTACCCAACAAAGTGAGAAACATTTGGAGAAGATTCTAAA  296
            |||||.||.||||||.||||.||||||||.|||||.||.||.|||||||||||.||..||||||||||||||||
Sbjct  223  GGAAACAACTTCCTGCGGCTGTGTGTTCTCAAAGTGACGCAGCAAAGTGAGAAGCACCTGGAGAAGATTCTAAA  296

Query  297  TGTGGATGAATTTGTGAAGAGAATTTTTTCTGTGATTCATAGTAATGATCCTGTGGCAAGAGCCATCACCCTCC  370
            |||||||||.|||||||||||..|.||.||.|||||.||.|||||.||.||.|||||.|||||||||||.||||
Sbjct  297  TGTGGATGAGTTTGTGAAGAGGGTGTTCTCAGTGATCCACAGTAACGACCCCGTGGCCAGAGCCATCACTCTCC  370

Query  371  GGATGTTGGGAAGTCTGGCATCAATAATTCCTGAGAGGAAGAATGCTCATCATAGTATTCGTCAGAGTTTAGAT  444
            |||||||||||||||||||.||.||.||.|||||||||||||||||.|||||.|||||.||.||||||.|.|||
Sbjct  371  GGATGTTGGGAAGTCTGGCGTCCATCATCCCTGAGAGGAAGAATGCCCATCACAGTATCCGCCAGAGTCTGGAT  444

Query  445  TCACATGATAATGTAGAAGTTGAAGCTGCTGTTTTTGCTGCTGCAAACTTCTCTGCACAGTCAAAGGATTTTGC  518
            ||.|||||||||||||||||.|||||||||||||||||.||.||||||||||||||||||||.|||||||||||
Sbjct  445  TCCCATGATAATGTAGAAGTCGAAGCTGCTGTTTTTGCAGCCGCAAACTTCTCTGCACAGTCGAAGGATTTTGC  518

Query  519  TGTAGGAATCTGTAACAAAATCAGTGAAATGATTCAAGGTTTAGCGACACCAGTAGACTTGAAGCTAAAATTGA  592
            |||.||.||||||||||||||||||||||||||||||||.|||||.|||||.||.|||.|||||||.||..|||
Sbjct  519  TGTGGGGATCTGTAACAAAATCAGTGAAATGATTCAAGGCTTAGCTACACCGGTGGACCTGAAGCTGAAGCTGA  592

Query  593  TACCCATTCTACAGCACATGCACCATGATGCAATCTTGGCTTCCAGTGCTCGTCAGCTTTTACAACAGCTGGTC  666
            |.||.||.||.||||||||||||||.|||||..||.||||.|||||.||.||.|||||..|.||.|||||||||
Sbjct  593  TCCCGATCCTGCAGCACATGCACCACGATGCCCTCCTGGCCTCCAGCGCCCGCCAGCTCCTGCAGCAGCTGGTC  666

Query  667  ACATCCTATCCGTCCACCAAAATGGTGATTGTGTCTTTGCACACTTTCACTCTGCTTGCAGCGTCATCTTTGGT  740
            ||.|||||.||.||||||||.|||||.||.||||||.|||||||||||||||||||.|||||.||.||||||||
Sbjct  667  ACGTCCTACCCCTCCACCAAGATGGTCATCGTGTCTCTGCACACTTTCACTCTGCTGGCAGCCTCCTCTTTGGT  740

Query  741  TGATACACCTAAGCAGATTCAGCTTCTGTTGCAGTATTTGAAGAATGATCCCAGGAAGGCAGTAAAGAGACTTG  814
            |||.|||||.||||||||||||||||||.|||||||||||||||||||.||||||||.||.||.||||||||||
Sbjct  741  TGACACACCCAAGCAGATTCAGCTTCTGCTGCAGTATTTGAAGAATGACCCCAGGAAAGCCGTGAAGAGACTTG  814

Query  815  CTATTCAAGATCTGAAATTACTTGCTAATAAAACACCACATACTTGGAGTAGGGAGAATATTCAGGCACTTTGT  888
            ||.||||.||||||||..|.|||||||.|||.||||||||.||.|||||||.||||||||||||||||||.|||
Sbjct  815  CTGTTCAGGATCTGAAGCTGCTTGCTAGTAAGACACCACACACGTGGAGTAAGGAGAATATTCAGGCACTCTGT  888

Query  889  GAGTGTGCCCTCCAGACTCCTTATGACAGCTTAAAACTAGGGATGTTGTCTGTCCTTTCCACACTATCAGGGAC  962
            ||||||||.||.||.|||||||||||||||||.|||||.|||||||||||||||||.||.||.||.|||||.||
Sbjct  889  GAGTGTGCACTGCACACTCCTTATGACAGCTTGAAACTCGGGATGTTGTCTGTCCTCTCTACGCTGTCAGGAAC  962

Query  963  CATCGCCATCAAACATTACTTCAGTATAGTTCCAGGAAATGTGAGTTCTTCTCCCAGATCTTCTGATTTAGTCA  1036
            |||.|||||.|||||||||||||||.|||||||.||||||||..|.|||||.||||||||||||||||||||||
Sbjct  963  CATTGCCATTAAACATTACTTCAGTGTAGTTCCCGGAAATGTAGGCTCTTCCCCCAGATCTTCTGATTTAGTCA  1036

Query 1037  AATTAGCCCAAGAGTGCTGTTACCATAATAACAGGGGCATTGCAGCTCATGGAGTTAGAGTCCTAACTAATATA  1110
            |||||||.|||||.|||||||||||||..|||||||||||.||||||||||||||.|||||.||||||||||||
Sbjct 1037  AATTAGCTCAAGAATGCTGTTACCATAGCAACAGGGGCATCGCAGCTCATGGAGTGAGAGTGCTAACTAATATA  1110

Query 1111  ACTGTTTCTTGTCAAGAAAAGGATCTTTTGGCACTGGAACAAGATGCTGTCTTTGGCCTGGAATCCCTACTGGT  1184
            ||.||.||||||||||||||.|||||.|||.|||||||.||||||||||||||.||||||||||||||.|||||
Sbjct 1111  ACAGTGTCTTGTCAAGAAAAAGATCTCTTGTCACTGGAGCAAGATGCTGTCTTCGGCCTGGAATCCCTTCTGGT  1184

Query 1185  ACTTTGTAGTCAAGATGATAGTCCAGGTGCTCAGGCCACTTTAAAGATTGCTCTAAACTGTATGGTGAAGTTGG  1258
            .|||||||||||||||||.||||||||||||||..|||||.|.||||.||||||.|.|||||||||||||.|||
Sbjct 1185  GCTTTGTAGTCAAGATGACAGTCCAGGTGCTCAATCCACTGTGAAGAGTGCTCTCAGCTGTATGGTGAAGCTGG  1258

Query 1259  CCAAGGGCAGGCCCCGTCTTAGCCAGTCAGTAGTTGAGACCTTGTTGACTCAATTGCACAGTGCTCAAGACGCT  1332
            ||||||||.||||||.|||.|||..||||||.|||||.||..||.|.|||||..|||||||..||||.||.|||
Sbjct 1259  CCAAGGGCCGGCCCCATCTGAGCAGGTCAGTGGTTGACACTCTGCTAACTCAGCTGCACAGCTCTCAGGATGCT  1332

Query 1333  GCCCGGATTTTGATGTGCCATTGCCTGGCAGCCATTGCCATGCAACTGCCGGTGCTGGGTGATGGGATGCTTGG  1406
            ||||||||..|.||||||||.|||||||||||||||||||||||.||.|||||.|||||.|||||.||||||||
Sbjct 1333  GCCCGGATCCTCATGTGCCACTGCCTGGCAGCCATTGCCATGCAGCTCCCGGTACTGGGCGATGGAATGCTTGG  1406

Query 1407  TGACCTCATGGAGCTGTACAAGGTGATTGGACGATCAGCCACAGACAAGCAACAAGAACTTCTGGTGAGTTTGG  1480
            .||||||.|||||||.||||||||||||||||||||||||||||||||||||||.|||||||||||.|||||||
Sbjct 1407  GGACCTCGTGGAGCTCTACAAGGTGATTGGACGATCAGCCACAGACAAGCAACAGGAACTTCTGGTAAGTTTGG  1480

Query 1481  CTACTGTGATTTTTGTTGCAAGTCAGAAGGCATTGTCTGTGGAAAGT-AAGGCAGTAATTAAGCAGCAGCTTGA  1553
            |||||||||||||.||.||.||.|||||.||||||||||..| |||| |||||.|||||.||||||||||||||
Sbjct 1481  CTACTGTGATTTTCGTAGCCAGCCAGAAAGCATTGTCTGCAG-AAGTGAAGGCGGTAATCAAGCAGCAGCTTGA  1553

Query 1554  AAGTGTCTCCAATGGATGGACTGTATACCGTATTGCCAGACAGGCTTCCAGAATGGGTAATCATGACATGGCCA  1627
            |||.|||||||.|||.|||||.||.|||||.||||||||.|||||||||||||||||.||.||.||||||||..
Sbjct 1554  AAGCGTCTCCAGTGGGTGGACCGTGTACCGGATTGCCAGGCAGGCTTCCAGAATGGGCAACCACGACATGGCTC  1627

Query 1628  AAGAGCTTTATCAGAGTTTGCTGACTCAGGTTGCCTCAGAACATTTCTACTTCTGGCTAAATAGTTTGAAGGAG  1701
            .|||||||||.||||||||||||||.||||||||.||||||||.||||||||||||||.||.|||.||||||||
Sbjct 1628  GAGAGCTTTACCAGAGTTTGCTGACGCAGGTTGCATCAGAACACTTCTACTTCTGGCTGAACAGTCTGAAGGAG  1701

Query 1702  TTTTCACATGCAGAACAGTGTCTCACTGGGTTGCAAGAGGAAAATTATAGTTCAGCACTTTCTTGCATTGCTGA  1775
            ||.||.|||||.||.||||||||.||||||.||||.|||||.|..|..||.|||||||||||.|||||||||||
Sbjct 1702  TTCTCCCATGCGGAGCAGTGTCTGACTGGGCTGCAGGAGGATAGCTTCAGCTCAGCACTTTCCTGCATTGCTGA  1775

Query 1776  ATCTTTAAAATTCTATCACAAAGGGATTGCTTCCTTAACAGCAGCTAGTACACCACTGAATCCTTTAAGCTTTC  1849
            .|||||.||.|||||.|||||||||||.||.|||.||||.||.||.||.|||||.|||||||||||.|||||||
Sbjct 1776  GTCTTTGAAGTTCTACCACAAAGGGATCGCCTCCCTAACGGCCGCCAGCACACCGCTGAATCCTTTGAGCTTTC  1849

Query 1850  AGTGTGAATTTGTAAAACTCAGGATTGACCTTTTACAAGCCTTCTCTCAACTTATCTGTACTTGTAATAGCCTG  1923
            |||||||.||||||||.|||.||||.||.||..|.|||||||||||.||.||.||.||.||.|||||.||||||
Sbjct 1850  AGTGTGAGTTTGTAAAGCTCCGGATCGATCTCCTCCAAGCCTTCTCGCAGCTCATTTGCACGTGTAACAGCCTG  1923

Query 1924  AAGACAAGCCCACCACCTGCAATTGCCACAACAATTGCCATGACCTTAGGAAATGACCTCCAGAGGTGTGGTCG  1997
            |||||||||||.||.|||||.||.|||||.||.||.|||||||||||||||||.||.||.||||||||.||.||
Sbjct 1924  AAGACAAGCCCTCCCCCTGCCATCGCCACCACCATCGCCATGACCTTAGGAAACGATCTTCAGAGGTGCGGCCG  1997

Query 1998  CATCTCCAATCAGATGAAACAGTCCATGGAAGAATTTCGAAGCCTTGCTTCTCGATATGGAGATCTTTACCAGG  2071
            .|||||||||||||||||.|||||||||||||||||.||||||||||||||.||.||..|||||||.||.||||
Sbjct 1998  GATCTCCAATCAGATGAAGCAGTCCATGGAAGAATTCCGAAGCCTTGCTTCCCGGTACAGAGATCTCTATCAGG  2071

Query 2072  CATCTTTTGATGCTGACTCAGCAACTTTGAGGAATGTTGAACTACAGCAGCAGAGCTGTTTACTGATATCTCAT  2145
            ||||.||||||||.||.||.||.|||.||||||||||.|||||.||||||||||||||.|||||||||.|||||
Sbjct 2072  CATCCTTTGATGCAGATTCGGCCACTCTGAGGAATGTAGAACTCCAGCAGCAGAGCTGCTTACTGATAGCTCAT  2145

Query 2146  GCAATAGAAGCCCTGATTTTGGATCCAGAATCAGCAAGTTTCCAGGAATATGGATCTACTGGAACAGCCCATGC  2219
            ||.||||||||||||.||||||||||.|||||||||||.||||||||.|||||.||.||.||..|.|||||.||
Sbjct 2146  GCCATAGAAGCCCTGGTTTTGGATCCTGAATCAGCAAGCTTCCAGGAGTATGGGTCCACGGGCGCTGCCCACGC  2219

Query 2220  TGATAGTGAATATGAAAGAAGAATGATGTCTGTATATAATCATGTCTTGGAGGAGGTAGAATCACTCAATCGGA  2293
            .||.|||||.|||||.||||||||||||||.||.||.|.||..|||.|.||||||||.||.||.||.||.||||
Sbjct 2220  CGACAGTGAGTATGAGAGAAGAATGATGTCCGTGTACAGTCGCGTCCTAGAGGAGGTGGAGTCGCTTAACCGGA  2293

Query 2294  AATATACCCCTGTTTCTTATATGCACACAGCATGCCTCTGCAATGCCATCATTGCTTTGCTGAAAGTTCCCCTT  2367
            |.|||.||||.|||||.||.||||||||||||||||||||||||||||||||.|||.|||||||||||||.|||
Sbjct 2294  AGTATGCCCCAGTTTCCTACATGCACACAGCATGCCTCTGCAATGCCATCATCGCTCTGCTGAAAGTTCCTCTT  2367

Query 2368  TCTTTCCAGAGATATTTTTTCCAGAAACTACAGTCTACCAGCATCAAGCTTGCTCTGTCACCATCGCCCCGGAA  2441
            ||.||.||||||||.|||||||||||||||||||||||||||||||||||||||||||||||.||.|||||||.
Sbjct 2368  TCATTTCAGAGATACTTTTTCCAGAAACTACAGTCTACCAGCATCAAGCTTGCTCTGTCACCTTCTCCCCGGAG  2441

Query 2442  TCCTGCAGAGCCCATTGCTGTCCAGAATAACCAGCAGCTGGCGCTAAAGGTAGAGGGAGTGGTTCAGCACGGAT  2515
            .||||||||||||||||||||.||||||||||||||||||||.|||||||||||.||.||.|||||||||||||
Sbjct 2442  CCCTGCAGAGCCCATTGCTGTGCAGAATAACCAGCAGCTGGCACTAAAGGTAGAAGGCGTTGTTCAGCACGGAT  2515

Query 2516  CTAAACCAGGACTCTTCCGCAAAATTCAGTCTGTCTGTCTGAATGTTTCTTCCACACTGCAGAGTAAATCTGGA  2589
            ||||||||||.||||||||||.|.||||||||||.||||||||||||||.|||||||||||||||||||||||.
Sbjct 2516  CTAAACCAGGCCTCTTCCGCAGAGTTCAGTCTGTGTGTCTGAATGTTTCCTCCACACTGCAGAGTAAATCTGGC  2589

Query 2590  CAAGACTACAAGATACCCATTGACAACATGACCAATGAGATGGAGCAAAGGGTTGAACCTCATAATGATTACTT  2663
            ||||||||||||||.||||||||.|.|||||||||||||||||||||.||||||||.||.||||||||||||||
Sbjct 2590  CAAGACTACAAGATTCCCATTGATAGCATGACCAATGAGATGGAGCAGAGGGTTGAGCCACATAATGATTACTT  2663

Query 2664  CAGTACTCAATTTCTGTTGAACTTTGCTATCCTTGGAACACACAACATTACAGTGGAATCTTCTGTGAAAGATG  2737
            |||.||.||.||.|||||||||||||||.||||||||||.||||.|||.||||||||.||.||.||||.|||||
Sbjct 2664  CAGCACCCAGTTCCTGTTGAACTTTGCTGTCCTTGGAACGCACAGCATCACAGTGGAGTCATCGGTGAGAGATG  2737

Query 2738  CCAATGGTATAGTATGGAAGACTGGTCCCAGAACTACCATATTTGTAAAATCCCTGGAAGACCCTTATTCCCAG  2811
            |||||||.||.||.|||||||||||.|||||||||||.||.|||||.|||||||||||||||||.||.||||||
Sbjct 2738  CCAATGGCATCGTCTGGAAGACTGGCCCCAGAACTACTATGTTTGTCAAATCCCTGGAAGACCCCTACTCCCAG  2811

Query 2812  CAAATTCGCTTACAACAGCAGCAAGCCCAGCAGCCATTACA---------------GCAGCAGCAGCAACGCAA  2870
            ||.||||||   |.|||||||||.|||||||||||.||.||               |||||.|||||..||||.
Sbjct 2812  CAGATTCGC---CTACAGCAGCAGGCCCAGCAGCCTTTGCAGCCACAGCCACAGCCGCAGCCGCAGCCTCGCAG  2882

Query 2871  TGCCTACACACGGTTT  2886
            |||||||||.||||||
Sbjct 2883  TGCCTACACCCGGTTT  2898

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