Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_08342
- Subject:
- NM_001252497.1
- Aligned Length:
- 4517
- Identities:
- 1632
- Gaps:
- 2710
Alignment
Query 1 ATGAACTCACCCGTGGACCCTGGCGCTAGGCAGGCGTTGAGGAAGAAGCCACCCGAGCGGACTCCCGAGGACTT 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 AAATACTATTTATTCTTATCTTCATGGAATGGAAATATTATCAAATCTCAGGGAACATCAGCTTAGATTAATGT 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 CTGCAAGAGCACGCTATGAGAGATACAGTGGCAATCAGGTTCTCTTTTGTTCAGAAACGATTGCCAGATGTTGG 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 TATATCCTACTTTCTGGATCTGTGCTTGTAAAAGGCTCCATGGTCTTGCCTCCTTGCAGTTTTGGTAAGCAGTT 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 TGGAGGAAAAAGAGGATGTGATTGTCTTGTATTAGAGCCTTCAGAAATGATTGTGGTAGAGAATGCCAAAGATA 370
||| |.||.||||| ||.|| ||| .|.||||
Sbjct 1 ---------------ATG-GCTTTTCTTG--TTCGA---------------TGT-------TACGCCA------ 28
Query 371 ATGAAGATAGTATTCTACAAAGAGAAATTCCTGCCAGACAATCCCGAAGAAGATTTCGGAAAATTAACTATAAA 444
||.||.|||..|.|.|.| |||
Sbjct 29 ------ATTGTCTTCAGCCATGGG-----CCT------------------------------------------ 49
Query 445 GGAGAGCGCCAAACCATTACTGATGATGTGGAGGTTAACAGCTATCTTTCTCTTCCAGCTGATCTTACCAAGAT 518
||||| |||||||||||||||||||||||
Sbjct 50 --------CCAAA--------------------------------------CTTCCAGCTGATCTTACCAAGAT 77
Query 519 GCATCTCACAGAAAACCCTCATCCACAGGTGACTCATGTGTCTTCTAGTCAGTCTGGTTGTAGCATTGCCAGTG 592
|||.||||||||.||||||||||||||||||||.|||||||||||||||||||||||.||||||||||||||||
Sbjct 78 GCACCTCACAGACAACCCTCATCCACAGGTGACGCATGTGTCTTCTAGTCAGTCTGGCTGTAGCATTGCCAGTG 151
Query 593 ACTCTGGAAGCAGCAGTTTATCTGATATCTATCAGGCTACGGAGAGTGAGGTAGGAGATGTAGATTTGACACGT 666
|||||||.||||||||||||||.|||||||||||||||||.||||||||.|||||||||||||||||.|||||.
Sbjct 152 ACTCTGGGAGCAGCAGTTTATCCGATATCTATCAGGCTACAGAGAGTGAAGTAGGAGATGTAGATTTAACACGC 225
Query 667 CTTCCAGAAGGACCTGTTGATTCTGAGGATGACGAAGAGGAAGATGAAGAGATTGATCGAACAGATCCATTGCA 740
||||||||||||||||||||||||||||||||.||.|||||.||.||||||||||||.|||||||||||.||||
Sbjct 226 CTTCCAGAAGGACCTGTTGATTCTGAGGATGAAGAGGAGGAGGAAGAAGAGATTGATAGAACAGATCCACTGCA 299
Query 741 GGGGCGAGATCTTGTTCGAGAATGTCTTGAAAAAGAACCTGCAGACAAAACTGATGATGACATTGAACAATTGC 814
|||.||||||||||||||.||.|||||||||||.|||||.||||||||||||||||||||..|||||||.||.|
Sbjct 300 GGGTCGAGATCTTGTTCGGGAGTGTCTTGAAAAGGAACCCGCAGACAAAACTGATGATGATGTTGAACAGTTAC 373
Query 815 TGGAGTTTATGCACCAGCTCCCTGCATTTGCAAACATGACCATGTCTGTAAGGAGAGAACTCTGCTCAGTGATG 888
|.|||||.|||||||||||.|||||.|||||.|||||||||||||||||||||||||||||||||||.||.|||
Sbjct 374 TTGAGTTCATGCACCAGCTGCCTGCCTTTGCGAACATGACCATGTCTGTAAGGAGAGAACTCTGCTCCGTCATG 447
Query 889 ATTTTTGAAGTGGTAGAGCAGGCTGGAGCTATTATTCTTGAAGATGGGCAAGAGCTTGACTCATGGTATGTTAT 962
.||||||||||.||||||||||||||.|||.||||||||||||||||||||||||||||||||||||||||.||
Sbjct 448 GTTTTTGAAGTAGTAGAGCAGGCTGGGGCTGTTATTCTTGAAGATGGGCAAGAGCTTGACTCATGGTATGTCAT 521
Query 963 TTTAAACGGCACTGTGGAAATCAGTCATCCAGATGGAAAAGTTGAAAATTTGTTTATGGGAAATAGTTTTGGAA 1036
||||||.||||||||.|||||.||||||||||||||.|||.|.||||||.|.||.|||||||||||||||||.|
Sbjct 522 TTTAAATGGCACTGTAGAAATTAGTCATCCAGATGGGAAAATAGAAAATCTCTTCATGGGAAATAGTTTTGGGA 595
Query 1037 TTACTCCCACTCTGGATAAGCAGTACATGCATGGAATTGTCAGGACTAAAGTAGATGATTGTCAGTTTGTCTGC 1110
||...|||||.||||||||||||.|||||||||||..|||||||||.|||||.|||||||||||||||||||||
Sbjct 596 TTGTCCCCACGCTGGATAAGCAGCACATGCATGGAGCTGTCAGGACCAAAGTCGATGATTGTCAGTTTGTCTGC 669
Query 1111 ATAGCCCAGCAAGATTATTGGAGAATTTTAAACCATGTGGAAAAAAATACCCATAAAGTTGAGGAAGAGGGAGA 1184
|||||.||.|||||.|||||||||||||||||.|||||||||||||||||.||.||||||||||||||||||||
Sbjct 670 ATAGCTCAACAAGACTATTGGAGAATTTTAAATCATGTGGAAAAAAATACTCACAAAGTTGAGGAAGAGGGAGA 743
Query 1185 AATTGTTATGGTACATGAGCATCGGGAACTAGACCGGAGTGGAACCAGGAAAGGACACATTGTGATCAAGGCAA 1258
.|||||.||||||||||||||.||.||.|||||||||||.|||||||||||||||||||||||.||||||||||
Sbjct 744 GATTGTCATGGTACATGAGCACCGTGAGCTAGACCGGAGCGGAACCAGGAAAGGACACATTGTAATCAAGGCAA 817
Query 1259 CACCTGAGCGTCTCATAATGCATTTAATAGAAGAACATTCCATCGTGGATCCAACTTATATAGAAGATTTTCTA 1332
||||||||||||||||.||||||||.||||||||||||||.||.|||||.|||||.||.|||||||||||.||.
Sbjct 818 CACCTGAGCGTCTCATCATGCATTTGATAGAAGAACATTCTATTGTGGACCCAACATACATAGAAGATTTCCTC 891
Query 1333 TTAACTTACAGGACATTTCTTGAAAGTCCTTTGGATGTTGGGATCAAACTATTGGAATGGTTTAAGATCGACAG 1406
|||||||||||||||||||||||||.|||||||||||||||||||||.||.|||||||||||||||||.||||.
Sbjct 892 TTAACTTACAGGACATTTCTTGAAACTCCTTTGGATGTTGGGATCAAGCTTTTGGAATGGTTTAAGATTGACAA 965
Query 1407 CTTAAGAGATAAGGTGACACGGATTGTATTATTATGGGTAAATAATCATTTTAATGATTTTGAAGGTGACCCTG 1480
|.||||.|||||||||||||||||||||.|.||||||||||||||||||||||||||||||||||||||.||||
Sbjct 966 CCTAAGGGATAAGGTGACACGGATTGTACTCTTATGGGTAAATAATCATTTTAATGATTTTGAAGGTGATCCTG 1039
Query 1481 CTATGACTCGATTTCTAGAGGAATTTGAAAAAAATCTGGAAGATACAAAGATGAATGGTCATCTCCGGTTATTG 1554
|||||||||.|||||||||.||||||||||.||||.|||||||||||||.|||||||||||.|||.||||||||
Sbjct 1040 CTATGACTCAATTTCTAGAAGAATTTGAAAGAAATTTGGAAGATACAAAAATGAATGGTCACCTCAGGTTATTG 1113
Query 1555 AATATTGCCTGTGCTGCAAAGGCTAAGTGGAGACAGGTTGTGCTGCAAAAGGCTTCCCGCGAGTCCCCTCTACA 1628
||||||||||||||||||||||||||||||||.||.|||||.|||||.|||||.|||||.||||||||.||.||
Sbjct 1114 AATATTGCCTGTGCTGCAAAGGCTAAGTGGAGGCAAGTTGTACTGCAGAAGGCGTCCCGTGAGTCCCCGCTGCA 1187
Query 1629 ATTCAGCCTTAATGGAGGGAGTGAGAAGGGATTTGGTATTTTTGTTGAAGGAGTAGAACCTGGTAGCAAAGCTG 1702
.|||.||||||.|||.||.|||||||||||||||||..|.||||||||||.|||||||.|||||||||||||||
Sbjct 1188 CTTCTGCCTTACTGGGGGCAGTGAGAAGGGATTTGGAGTCTTTGTTGAAGAAGTAGAATCTGGTAGCAAAGCTG 1261
Query 1703 CTGATTCAGGACTGAAACGTGGTGATCAGATTATGGAAGTAAATGGACAAAACTTTGAGAATATTACATTTATG 1776
||||..|||||||||||.|.|||||||||.|.||||||||.|||||||||||||||||||||||||||.||...
Sbjct 1262 CTGACGCAGGACTGAAAAGGGGTGATCAGGTAATGGAAGTCAATGGACAAAACTTTGAGAATATTACACTTGCT 1335
Query 1777 AAAGCCGTTGAAATTTTGAGGAATAATACTCATCTTGCACTTACTGTGAAGACCAACATTTTTGTGTTCAAAGA 1850
||||||.|||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 AAAGCCCTTGAAATTTTGAGAAATAATACTCATCTTGCACTTACTGTGAAGACCAACATTTTTGTGTTCAAAGA 1409
Query 1851 GTTACTTTTTAGGACTGAACAAGAGAAATCTGGTGTTCCTCATATTCCCAAAATTGCTGAAAAAAAAAGTAATC 1924
.||.||...|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1410 ATTGCTCAGTAGGACTGAACAAGAGAAATCTGGTGTTCCTCATATTCCCAAAATTGCTGAAAAAAAAAGTAATC 1483
Query 1925 GCCATTCTATCCAGCATGTGCCAGGAGATATTGAACAGACATCACAGGAGAAAGGAAGTAAGAAAGTTAAAGCA 1998
|||||||.||.||..||||.|||||.|||||.||.|||.||.|||||||||||||||.|||||||.||||||||
Sbjct 1484 GCCATTCAATTCAAGATGTCCCAGGGGATATGGAGCAGGCACCACAGGAGAAAGGAAATAAGAAAATTAAAGCA 1557
Query 1999 AATACTGTTTCAGGTGGAAGAAACAAAATCAGGAAGATTTTGGATAAAACACGATTTAGTATCTTGCCTCCAAA 2072
|||||.|||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||
Sbjct 1558 AATACCGTTTCAGGTGGAAGAAACAAAATCAGGAAAATTTTGGATAAAACACGATTTAGTATCTTGCCTCCAAA 1631
Query 2073 GCTATTTAGTGATGGAGGCCTAAGCCAATCACAAGATGACAGCATTGTGGGAACAAGGCACTGTAGGCATAGTC 2146
.|||||||||||.||||||||.||.|||||||||||||||||||||||||||||.||||||||||||||.||.|
Sbjct 1632 ACTATTTAGTGACGGAGGCCTGAGTCAATCACAAGATGACAGCATTGTGGGAACCAGGCACTGTAGGCACAGCC 1705
Query 2147 TGGCTATAATGCCCATCCCTGGAACACTCTCATCCAGCAGCCCTGATCTCCTGCAGCCTACCACCAGTATGTTG 2220
|||||||||||||.||.||.||||||||.||||||||||||||.||||||.|.|||||||||||.||.||||||
Sbjct 1706 TGGCTATAATGCCAATTCCCGGAACACTTTCATCCAGCAGCCCAGATCTCTTACAGCCTACCACTAGCATGTTG 1779
Query 2221 GATTTTTCCAATCCTTCAGATA----TCCC-TGATCAAGTTATAAGAGTTTTCAAAGTGGATCAGCAAAGTTGC 2289
||.||||||||||||||||.|| |||| ||
Sbjct 1780 GACTTTTCCAATCCTTCAGGTAATGTTCCCATG----------------------------------------- 1812
Query 2290 TACATTATCATCAGTAAAGACACCACAGCTAAAGAAGTAGTTTTTCATGCTGTTCATGAATTTGGTTTGACCGG 2363
Sbjct 1813 -------------------------------------------------------------------------- 1812
Query 2364 TGCATCCGACACATATTCTCTCTGTGAAGTTTCTGTTACTCCTGAGGGTGTCATAAAACAGAGAAGACTTCCAG 2437
Sbjct 1813 -------------------------------------------------------------------------- 1812
Query 2438 ATCAGTTCTCCAAATTAGCTGATAGAATTCAACTCAATGGAAGGTATTACTTAAAAAATAACATGGAAACAGAA 2511
Sbjct 1813 -------------------------------------------------------------------------- 1812
Query 2512 ACCTTATGTTCAGATGAAGATGCTCAAGAACTAGTTAAGGAAAGCCAGCTATCCATGCTGCAGCTCAGTACCAT 2585
Sbjct 1813 -------------------------------------------------------------------------- 1812
Query 2586 TGAGGTGGCCACCCAGCTGTCAATGAGGGACTTTGATTTGTTTCGTAATATTGAACCGACTGAGTACATCGATG 2659
Sbjct 1813 -------------------------------------------------------------------------- 1812
Query 2660 ACCTTTTTAAGTTAAATTCCAAAACAGGAAATACTCATTTGAAGAGGTTTGAGGACATTGTAAACCAAGAGACA 2733
Sbjct 1813 -------------------------------------------------------------------------- 1812
Query 2734 TTCTGGGTTGCCTCAGAAATTTTAACTGAAGCAAATCAGCTCAAACGAATGAAGATTATTAAGCATTTTATTAA 2807
Sbjct 1813 -------------------------------------------------------------------------- 1812
Query 2808 AATTGCACTTCATTGTCGAGAATGTAAGAACTTCAATTCCATGTTTGCAATAATAAGTGGCTTGAACCTGGCAT 2881
Sbjct 1813 -------------------------------------------------------------------------- 1812
Query 2882 CTGTAGCAAGACTCAGAGGAACTTGGGAAAAGTTACCAAGCAAATACGAGAAACATCTTCAAGATCTACAAGAC 2955
Sbjct 1813 -------------------------------------------------------------------------- 1812
Query 2956 ATTTTTGATCCATCTAGAAACATGGCAAAGTATAGAAATATTCTTAGTAGTCAAAGTATGCAGCCTCCAATTAT 3029
Sbjct 1813 -------------------------------------------------------------------------- 1812
Query 3030 TCCACTCTTCCCTGTTGTCAAGAAAGATATGACATTTCTACATGAAGGAAATGACTCCAAAGTAGATGGTTTAG 3103
Sbjct 1813 -------------------------------------------------------------------------- 1812
Query 3104 TAAACTTTGAGAAGTTAAGAATGATTTCCAAGGAAATCCGCCAAGTTGTTCGAATGACTTCTGCTAACATGGAC 3177
Sbjct 1813 -------------------------------------------------------------------------- 1812
Query 3178 CCAGCTATGATGTTTCGACAGAGGAAGAAGAGGTGGCGGAGTCTGGGGTCACTGAGTCAAGGAAGCACAAATTC 3251
Sbjct 1813 -------------------------------------------------------------------------- 1812
Query 3252 AAACATGCTGGATGTTCAGGGAGGTGCTCACAAAAAAAGGGCACGCCGCAGCTCTCTGCTTAATGCCAAGAAGC 3325
Sbjct 1813 -------------------------------------------------------------------------- 1812
Query 3326 TATATGAGGATGCCCAAATGGCAAGGAAGGTGAAGCAGTATCTTTCCAGTCTCGATGTAGAGACAGATGAGGAG 3399
Sbjct 1813 -------------------------------------------------------------------------- 1812
Query 3400 AAGTTCCAGATGATGTCATTACAGTGGGAGCCTGCATATGGTACCTTGACCAAGAATTTAAGTGAGAAAAGATC 3473
Sbjct 1813 -------------------------------------------------------------------------- 1812
Query 3474 AGCCAAATCATCTGAAATGTCTCCAGTGCCTATGAGGTCAGCTGGCCAAACAACTAAAGCCCACTTGCATCAAC 3547
Sbjct 1813 -------------------------------------------------------------------------- 1812
Query 3548 CCCACAGAGTAAGCCAGGTGCTTCAGGTGCCAGCTGTTAATTTGCACCCCATCAGGAAGAAGGGACAAACAAAA 3621
Sbjct 1813 -------------------------------------------------------------------------- 1812
Query 3622 GACCCTGCACTGAATACAAGTTTACCTCAGAAAGTTTTAGGAACAACTGAAGAAATAAGTGGTAAGAAGCATAC 3695
Sbjct 1813 -------------------------------------------------------------------------- 1812
Query 3696 AGAAGACACTATTTCTGTGGCGTCATCTTTACATTCTAGTCCTCCTGCATCTCCTCAAGGCTCCCCTCACAAAG 3769
Sbjct 1813 -------------------------------------------------------------------------- 1812
Query 3770 GTTACACACTTATTCCATCAGCTAAATCTGACAACTTGTCTGACTCCAGCCATAGTGAGATTTCTTCACGGTCC 3843
Sbjct 1813 -------------------------------------------------------------------------- 1812
Query 3844 AGCATCGTGAGCAATTGTTCTGTTGACTCCATGTCTGCAGCTCTACAGGATGAACGGTGTTCCTCTCAGGCCCT 3917
Sbjct 1813 -------------------------------------------------------------------------- 1812
Query 3918 GGCAGTCCCTGAATCCACTGGGGCATTGGAAAAGACAGAGCACGCTTCAGGGATAGGAGATCATAGTCAACATG 3991
Sbjct 1813 -------------------------------------------------------------------------- 1812
Query 3992 GCCCTGGGTGGACACTCTTGAAGCCATCTCTAATCAAGTGTTTAGCTGTCTCATCGTCTGTGAGCAATGAAGAG 4065
Sbjct 1813 -------------------------------------------------------------------------- 1812
Query 4066 ATTTCTCAAGAGCATATCATTATAGAAGCAGCTGACAGTGGTCGTGGAAGTTGGACTTCGTGTTCAAGCAGCTC 4139
Sbjct 1813 -------------------------------------------------------------------------- 1812
Query 4140 CCATGACAACTTCCAAAGCCTTCCAAACCCAAAAAGCTGGGATTTTTTGAACTCTTACAGACATACCCATTTGG 4213
Sbjct 1813 -------------------------------------------------------------------------- 1812
Query 4214 ATGACCCCATTGCTGAAGTTGAACCCACTGACTCTGAGCCCTATTCCTGTTCTAAAAGCTGCTCTAGAACTTGT 4287
Sbjct 1813 -------------------------------------------------------------------------- 1812
Query 4288 GGGCAGTGTAAAGGAAGCCTAGAGAGAAAGAGTTGGACCTCCTCCAGTTCTCTGTCTGACACGTATGAACCAAA 4361
Sbjct 1813 -------------------------------------------------------------------------- 1812
Query 4362 CTATGGGACAGTTAAACAGAGAGTATTGGAGAGCACCCCAGCTGAGTCATCTGAAGGCTTGGACCCCAAGGATG 4435
Sbjct 1813 -------------------------------------------------------------------------- 1812
Query 4436 CCACTGACCCAGTTTATAAAACTGTCACTTCAAGTACAGAAAAGGGCTTGATTGAAAATGAACAAGTTTCAGCA 4509
Sbjct 1813 -------------------------------------------------------------------------- 1812
Query 4510 GTC 4512
Sbjct 1813 --- 1812
