Nucleotide Global Alignment

Description

Query:
ccsbBroad304_08581
Subject:
NM_001004301.4
Aligned Length:
1854
Identities:
1232
Gaps:
462

Alignment

Query    1  ATGGCTCTTCCTCAGGGTCTACTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCT  74
            |||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGCTCTTCCTCAGGGTCTATTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCT  74

Query   75  GGACCCTGCTCAGAGGACTCTATACAGAGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATACCT  148
            |||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||.||
Sbjct   75  GGACCCTGCTCAGAGGACTCTATACAGGGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATATCT  148

Query  149  CTTCCAAATGCATGATGAAGATGTTCTCATCAACAGGACAAGGCAATACAGAAGTGGTCCACACAGGGACATTG  222
            ||||||||||||||||||||..||||||||||||||.|||||||||||.|||||||.|||||||||||||||||
Sbjct  149  CTTCCAAATGCATGATGAAGGAGTTCTCATCAACAGCACAAGGCAATAGAGAAGTGATCCACACAGGGACATTG  222

Query  223  CAAATACATGCAAGTCATCACATTGGAGATACTT--GCTTCCAGGAAATTGAGAAAGATATTCATGACTTTGTG  294
            ||||.|||||.|||||||||||.|||||  ||||  ||||.|||||||||||.||||||||||||.||||.|.|
Sbjct  223  CAAAGACATGAAAGTCATCACACTGGAG--ACTTTCGCTTTCAGGAAATTGATAAAGATATTCATAACTTAGAG  294

Query  295  TTTCAGTGGCAAGAAAATGAAACAAATGGCCATGAAGCACTCATGACAAAAATCAAAAAGTTGA-TGAGTAGTA  367
            |||||||||||||||.||||||.||||.||||||||||||.|||||||.||||||||||||||| || |||||.
Sbjct  295  TTTCAGTGGCAAGAAGATGAAAGAAATAGCCATGAAGCACCCATGACAGAAATCAAAAAGTTGACTG-GTAGTG  367

Query  368  CAGAGCGACATGATCAAAGGCATGCTGGAAACAAACCTATTAAAAATGAGCTTGGATCAAGCTTTCATTCGCAT  441
            ||||.|||.|||||||||||||||||||||||||.|||||||||.||.||||||||||||||||||||||||||
Sbjct  368  CAGACCGATATGATCAAAGGCATGCTGGAAACAAGCCTATTAAAGATCAGCTTGGATCAAGCTTTCATTCGCAT  441

Query  442  CTGCCTGAAGTGCACATATTTCACCCCGAAGGGAAAATTGGTAATCAAGTTGAGAAGGCTATCAACGATGCTTT  515
            |||||||||.|.|||||.|||||..||.||||||||||||||||||||||.||||||.|||||||||||||||.
Sbjct  442  CTGCCTGAACTCCACATGTTTCAGACCCAAGGGAAAATTGGTAATCAAGTGGAGAAGTCTATCAACGATGCTTC  515

Query  516  CTCAGTTTCAGCATCCCAACGAATTTCCTGTAGGCCAAAAACTCGTATTTCTAATAAGTATAGGAATAATTTCC  589
            ||||.|||||.||||||||.|||||||.||||||||.|||||.|.||||||||||||.|||.||||||||||||
Sbjct  516  CTCAATTTCAACATCCCAAAGAATTTCTTGTAGGCCCAAAACCCATATTTCTAATAACTATGGGAATAATTTCC  589

Query  590  TCCAGTCTTCATTACTCACACAAAAACGGGAAGTACACACAAGAGAAAAATCTTTCCAACGTAATGAGAGTGGC  663
            ...|.|||||.||||||||||||||||.|||.|||||||..||||||||.|||||||||.||||||||||||||
Sbjct  590  GGAATTCTTCGTTACTCACACAAAAACAGGAGGTACACATGAGAGAAAAGTCTTTCCAATGTAATGAGAGTGGC  663

Query  664  AAAGCCTTTAATGGTAGCTCACTCTTAAAAAAACATCAGATAATCCATTTAGGAGACAAACAGTATAAATGTGA  737
            ||||||||||||..||||||||||||||..||||||||.|||||||||||||||||.|||||.|||||||||||
Sbjct  664  AAAGCCTTTAATTATAGCTCACTCTTAAGGAAACATCAAATAATCCATTTAGGAGAGAAACAATATAAATGTGA  737

Query  738  TGTATGCGGCAAGGACTTTCATCAGAAGCGATACCTTGCATGCCA---TAGATGTCACACTGGTGAGAATCCTT  808
            ||||||.|||||||.||||.|||.|||||||.||||.|..|||||   |||||||||||||||.|||||.||||
Sbjct  738  TGTATGTGGCAAGGTCTTTAATCGGAAGCGAAACCTAGTGTGCCATCGTAGATGTCACACTGGGGAGAAACCTT  811

Query  809  ACAAGTGTAATGAGTGTGGCAAGACATTCAGTCACA---ATTC-------AGCCCTGTTAG--TTC--------  862
            |||.|||||||||||||||||||||.||||||||.|   ||||       .|||.|..|||  |||        
Sbjct  812  ACAGGTGTAATGAGTGTGGCAAGACTTTCAGTCAGACGTATTCCCTTACATGCCATCGTAGACTTCATACTGGA  885

Query  863  ----------------------------ACAAGGC------------------------------------AAT  872
                                        ||||.||                                    |||
Sbjct  886  GAGAAACCTTACAAATGTGAAGAATGTGACAAAGCTTTCAGTTTCAAATCAAACCTTAAAAGACATAGGAGAAT  959

Query  873  TCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCA-------------ACA----  929
            ||||.|||||||.|||||.||||||||||||||||||||||||...||||.|||             |||    
Sbjct  960  TCATGCTGGAGAAAAACCATACAAGTGTAATGAATGTGGCAAGACCTTTAGTCAGACGTCATCCCTTACATGCC  1033

Query  930  ATC--------------------AAACCTTGCACGT--------------------------------------  945
            |||                    |||||||.||.||                                      
Sbjct 1034  ATCGTAGACTTCATACTGGAGAGAAACCTTTCAAGTGTAATGAGTGTGGCAAGACCTTTAGTCGGAAGTCATCC  1107

Query  946  ---------CATCATAGAGTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAA------------  998
                     |||||||||.|||||||.||||||||||||||.||.|||.|.|||||||.|||            
Sbjct 1108  CTTACATGCCATCATAGACTTCATACGGGAGAGAAACCTTATAAGTGTAATGAATGTGGCAAGACCTTCAGTCA  1181

Query  999  --AGTT-----------------------TTCA--------------------------------GTCGCA---  1012
              ||||                       ||||                                ||.|||   
Sbjct 1182  GGAGTTAACCCTTAAATGCCATCGTAGACTTCATACCGGAGAGAAGCCTTACAAGTGTAATGAATGTGGCAAGG  1255

Query 1013  -----AAT-------CACACCTTGAAAGACATAGGAGAATTCACACTGGAGAGAAACCATACAAATGTAAGGTT  1074
                 |||       ||.||||||.|.|.|||...|||.||||.|.||||||||||||.|||||.||||..|..
Sbjct 1256  TTTTTAATAAAAAGGCAAACCTTGCACGTCATCATAGACTTCATAGTGGAGAGAAACCCTACAAGTGTACTGAG  1329

Query 1075  TGTGACAAGGCTTTCAGACGTGATTCACACCTGGCACAACATACTGTAATTCACACTGGAGAGAAACCTTACAA  1148
            ||||.||||.|.|||||.||..|||||..|||.|.|...||||..|..|||||.|.|||||||||||.||||||
Sbjct 1330  TGTGTCAAGACGTTCAGTCGAAATTCAGCCCTTGTAATTCATAAGGCTATTCATATTGGAGAGAAACGTTACAA  1403

Query 1149  GTGTAATGAGTGTGGCAAGACCTTCGTTCAAAATTCATCTCTTGTAATGCATAAGGTCATTCATACTGGAGAGA  1222
            |||||||||||||||||||||.|||..||.||.||||.|.||.|||||.||||.||..||||||||||||||||
Sbjct 1404  GTGTAATGAGTGTGGCAAGACGTTCAGTCGAATTTCAGCCCTCGTAATTCATACGGCAATTCATACTGGAGAGA  1477

Query 1223  AACGTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCACAAATCAAACCTTGCATGTCATCGTAGACTTCAT  1296
            |||.||||||||||||||||||||||||||.||||||||..|||.||.|||||||||||||||.||||||||||
Sbjct 1478  AACCTTACAAGTGTAATGAATGTGGCAAGGGTTTTAATCGGAAAACACACCTTGCATGTCATCATAGACTTCAT  1551

Query 1297  ACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCGAAAATCAAACCTTGAACGTCATCA  1370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||.||.||||||.||.||||||
Sbjct 1552  ACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCGAAAAACACACCTTGCACATCATCA  1625

Query 1371  TAGACTTCATACTGGAAAGAAATCT-------------------------------------------------  1395
            ||||||||||||||||.|.|||.||                                                 
Sbjct 1626  TAGACTTCATACTGGAGATAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAAAAAGCACACCTTG  1699

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1700  CACGTCACCATAGACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAAAAA  1773

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1774  GCAAACCTTGCACGTCATCATAGACTTCATACTGGAGAGAAACCTTACAAGTTTAATGAGTGTGGCAAAGCTTT  1847

Query 1396  ----  1395
                
Sbjct 1848  TAAT  1851

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.