Nucleotide Global Alignment

Description

Query:
ccsbBroad304_08581
Subject:
NM_001008801.2
Aligned Length:
1581
Identities:
1206
Gaps:
201

Alignment

Query    1  ATGGCTCTTCCTCAGGGTCTACTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCT  74
            |||||||||||||||||||||.|||||||||||||.||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGCTCTTCCTCAGGGTCTATTGACATTCAGGGACGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCT  74

Query   75  GGACCCTGCTCAGAGGACTCTATACAGAGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATACCT  148
            |||||||||||||||||||.|||||||.|||||||||||||||||||||||||||||.|||||||||||||.||
Sbjct   75  GGACCCTGCTCAGAGGACTTTATACAGGGACGTGATGCTGGAGAATTATAGGAACCTCGTCTCCCTGGATATCT  148

Query  149  CTTCCAAATGCATGATGAAGATGTTCTCATCAACAGGACAAGGCAATACAGAAGTGGTCCACACAGGGACATTG  222
            ||||||||||||||.||||||.|||.||.||||||||.||||||||||||||||||.|||||||||||||||||
Sbjct  149  CTTCCAAATGCATGTTGAAGACGTTGTCGTCAACAGGGCAAGGCAATACAGAAGTGATCCACACAGGGACATTG  222

Query  223  CAAATACATGCAAGTCATCACATTGGAGATACTTGCTTCCAGGAAATTGAGAAAGATATTCATGACTTTGTGTT  296
            ||.|.|||.||||||||||||||||||||...|||.|||||.||||||||||||||.|||||||.|||.|.|||
Sbjct  223  CACAGACAAGCAAGTCATCACATTGGAGAATTTTGTTTCCATGAAATTGAGAAAGACATTCATGGCTTCGAGTT  296

Query  297  TCAGTGGCAAGAAAATGAAACAAATGGCCATGAAGCACTCATGACAAAAATCAAAAAGTT-GATGAGTAGTACA  369
            |||||||.|||||.||||||||||||||||||.|||||.|||||||.||||||||.|||| |.|| ||||||||
Sbjct  297  TCAGTGGAAAGAAGATGAAACAAATGGCCATGCAGCACCCATGACAGAAATCAAAGAGTTGGCTG-GTAGTACA  369

Query  370  GAGCGACATGATCAAAGGCATGCTGGAAACAAACCTATTAAAAATGAGCTTGGATCAAGCTTTCATTCGCATCT  443
            |..|.|||||||||||||||||||||||||||.|.|||||||.||.|||||||||||||||||||||.||||||
Sbjct  370  GGCCAACATGATCAAAGGCATGCTGGAAACAAGCGTATTAAAGATCAGCTTGGATCAAGCTTTCATTTGCATCT  443

Query  444  GCCTGAAGTGCACATATTTCACCCCGAAGGGAAAATTGGTAATCAAGTTGAGAAGGCTATCAACGATGCTTTCT  517
            |||||||..||||||||||||..|.||||||||||||||||||||||||||||||.||||||||.||||||.||
Sbjct  444  GCCTGAACCGCACATATTTCAGTCTGAAGGGAAAATTGGTAATCAAGTTGAGAAGTCTATCAACAATGCTTCCT  517

Query  518  CAGTTTCAGCATCCCAACGAATTTCCTGTAGGCCAAAAACTCGTATTTCTAATAAGTATAGGAATAATTTCCTC  591
            ||||||||.||||||||.||||||..||||||||.|||||.|.||||||||||||||||.|.|||||||.||||
Sbjct  518  CAGTTTCAACATCCCAAAGAATTTGTTGTAGGCCCAAAACCCATATTTCTAATAAGTATGGAAATAATTCCCTC  591

Query  592  CAGTCTTCATTACTCACACAAAAACGGGAAGTACACACAAGAGAAAAATCTTTCCAACGTAATGAGAGTGGCAA  665
            ||.|||||||||||||||||||||.||||||||||||..||||||||||||||..||.|||...||||...|||
Sbjct  592  CATTCTTCATTACTCACACAAAAATGGGAAGTACACATGAGAGAAAAATCTTTTGAATGTATACAGAGCTTCAA  665

Query  666  AGCCTTTAATGGTAGCTCACTCTTAAAAAAACATCAGATAATCCATTTAGGAGACAAACAGTATAAATGTGATG  739
            |.||||||||.|.|||||||||||||||||||||||||||||.||.||||.|||.|||||.|.|||||||||||
Sbjct  666  ATCCTTTAATTGCAGCTCACTCTTAAAAAAACATCAGATAATTCACTTAGAAGAGAAACAATGTAAATGTGATG  739

Query  740  TATGCGGCAAGGACTTTCATCAGAAGCGATACCTTGCATGCCA---TAGATGTCACACTGGTGAGAATCCTTAC  810
            ||||.|||||||.||||.|||||||||||||||||||.|||||   |||||||||||||||||||||.||||||
Sbjct  740  TATGTGGCAAGGTCTTTAATCAGAAGCGATACCTTGCCTGCCATCGTAGATGTCACACTGGTGAGAAACCTTAC  813

Query  811  AAGTGTAATGAGTGTGGCAAGACATTCAGTCACAATTCAGCCCTGTTAGTTCACAA------------------  866
            |||||||||||||||||||||||.||..||||.||||||.||||.||..|||||||                  
Sbjct  814  AAGTGTAATGAGTGTGGCAAGACCTTTGGTCATAATTCATCCCTCTTCATTCACAAAGCGCTTCATACTGGAGA  887

Query  867  --------------------------------------------------------------------------  866
                                                                                      
Sbjct  888  GAAACCTTATGAATGTGAAGAATGTGACAAAGTTTTCAGTCGCAAATCACACCTTGAAAGACATAAGAGGATTC  961

Query  867  ----------------------------------------------------------------GGCAA-----  871
                                                                            |||||     
Sbjct  962  ATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGATGAGGCTTTCGCATATAATTCATATCTGGCAAAACAT  1035

Query  872  -------TTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAACAATCAAACCT  938
                   ||||.|||||||||||||||||||..|||||||||||||||||.||||||||||.||.|||||.|||
Sbjct 1036  ACTATACTTCACACTGGAGAGAAACCTTACACATGTAATGAATGTGGCAAAGTTTTTAATCGACTATCAACCCT  1109

Query  939  TGCACGTCATCATAGAGTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCAGTCGCA  1012
            ||||||.|||||||||.||||||||||||||||||||||||||||||||||.||||||||||||||||||||||
Sbjct 1110  TGCACGCCATCATAGACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAGTGTGACAAAGTTTTCAGTCGCA  1183

Query 1013  AATCACACCTTGAAAGACATAGGAGAATTCACACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCT  1086
            |||||||||||||||||||||||||.|||||.|.||||||||||||.|||||||||.|.|..|||..|||.|.|
Sbjct 1184  AATCACACCTTGAAAGACATAGGAGGATTCATAGTGGAGAGAAACCTTACAAATGTGAAGAATGTTGCAAAGTT  1257

Query 1087  TTCAGACGTGATTCACACCTGGCACAACATACTGTA--ATTCACACTGGAGAGAAACCTTACAAGTGTAATGAG  1158
            |||||.||..|.|||.||||||  .||.|.||.|.|  |||||.||||||||||||||.|||||.|||||.|..
Sbjct 1258  TTCAGTCGCAAATCAAACCTGG--AAAGACACAGGAGGATTCATACTGGAGAGAAACCATACAAATGTAAGGTT  1329

Query 1159  TGTGGCAAGACCTTCGTTCAAA---ATTCATCTCTTGTAATGCATAAGGTCA-----TTCATACTGGAGAGAAA  1224
            ||||.||||.|.|||   ||.|   ||||| |.|.||    |||.||..|||     |||||||||||||||||
Sbjct 1330  TGTGACAAGGCTTTC---CAGAGGGATTCA-CACCTG----GCACAACATCAGAGAGTTCATACTGGAGAGAAA  1395

Query 1225  CGTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCACAAATCAAACCTTGCATGT----CATCGTAGACTTC  1294
            |.|||||||||||||||.|||||||||...||...|||.|.||||    |.||.|.|    ||||||||.||||
Sbjct 1396  CCTTACAAGTGTAATGAGTGTGGCAAGACCTTCGGTCAGACATCA----TCGCTTATAATCCATCGTAGGCTTC  1465

Query 1295  ATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCGAAAATCAAACCTTGAACGTCAT  1368
            |||||||||||||||||||||||||||||||.|||||||||...||.|.||..|..|||..|||||.|...|||
Sbjct 1466  ATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCAGTCAGATGTCATCCCTTGTATACCAT  1539

Query 1369  CATAGACTTCATACTGGAAAGAAATCT  1395
            |||||.|||||||.||||.||||..||
Sbjct 1540  CATAGGCTTCATAGTGGAGAGAAGCCT  1566

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.