Nucleotide Global Alignment

Description

Query:
ccsbBroad304_08581
Subject:
NM_001310127.1
Aligned Length:
2157
Identities:
1303
Gaps:
765

Alignment

Query    1  ATGGCTCTTCCTCAGGGTCTACTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCT  74
            |||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGCTCTTCCTCAGGGTCTATTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCT  74

Query   75  GGACCCTGCTCAGAGGACTCTATACAGAGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATACCT  148
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct   75  GGACCCTGCTCAGAGGACTCTATACAGAGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATATCT  148

Query  149  CTTCCAAATGCATGATGAAGATGTTCTCATCAACAGGACAAGGCAATACAGAAGTGGTCCACACAGGGACATTG  222
            |||||||||||||||||.|   |||||||||||.|||..|||||||||||||||||.|||||||||||||||||
Sbjct  149  CTTCCAAATGCATGATGGA---GTTCTCATCAATAGGGAAAGGCAATACAGAAGTGATCCACACAGGGACATTG  219

Query  223  CAAATACATGCAAGTCATCACATTGGAGATACTTGCTTCCAGGAAATTGAGAAAGATATTCATGACTTTGTGTT  296
            ||||.||..||||||||||||||||||||...||||||||||||||||||||||||.|||||||||||||||||
Sbjct  220  CAAAGACTGGCAAGTCATCACATTGGAGAATGTTGCTTCCAGGAAATTGAGAAAGACATTCATGACTTTGTGTT  293

Query  297  TCAGTGGCAAGAAAATGAAACAAATGGCCATGAAGCACTCATGACAAAAATCAAAAAGTTGATGAGTAGTACAG  370
            |||||||||||||.||||||||||||||||||||||||.|||||||.||||||||.||||||.|.|||||||||
Sbjct  294  TCAGTGGCAAGAAGATGAAACAAATGGCCATGAAGCACCCATGACAGAAATCAAAGAGTTGACGGGTAGTACAG  367

Query  371  AGCGACATGATCAAAGGCATGCTGGAAACAAACCTATTAAAAATGAGCTTGGATCAAGCTTTCATTCGCATCTG  444
            |.|.|.|||||||||||||||||||||||||.|||||||||.||.||||||||||||||||||||||.||||||
Sbjct  368  ACCAATATGATCAAAGGCATGCTGGAAACAAGCCTATTAAATATCAGCTTGGATCAAGCTTTCATTCACATCTG  441

Query  445  CCTGAAGTGCACATATTTCACCCCGAAGGGAAAATTGGTAATCAAGTTGAGAAGGCTATCAACGATGCTTTCTC  518
            ||||||.|||||||||||||.||||||||||||||||||||||||.||||||||.||||||||.||||||.|||
Sbjct  442  CCTGAACTGCACATATTTCAGCCCGAAGGGAAAATTGGTAATCAACTTGAGAAGTCTATCAACAATGCTTCCTC  515

Query  519  AGTTTCAGCATCCCAACGAATTTCCTGTAGGCCAAAAACTCGTATTTCTAATAAGTATAGGAATAATTTCCTCC  592
            |||||||.||||||||.|||||||.||||||||.|||||.|.||||||||||||.|||.|||||||||||.|||
Sbjct  516  AGTTTCAACATCCCAAAGAATTTCTTGTAGGCCCAAAACCCATATTTCTAATAACTATGGGAATAATTTCTTCC  589

Query  593  AGTCTTCATTACTCACACAAAAACGGGAAGTACACACAAGAGAAAAATCTTTCCAACGTAATGAGAGTGGCAAA  666
            |.|||||||||||||||||.||||.|||.|||||||..|.||||||||||||||||..||||||||||||||||
Sbjct  590  ATTCTTCATTACTCACACAGAAACAGGATGTACACAGGAAAGAAAAATCTTTCCAATTTAATGAGAGTGGCAAA  663

Query  667  GCCTTTAATGGTAGCTCACTCTTAAAAAAACATCAGATAATCCATTTAGGAGACAAACAGTATAAATGTGATGT  740
            .||||||||.|||||||||||||.|||||||||||||||||.|||.|||||||.|||||.||||||||||||||
Sbjct  664  TCCTTTAATTGTAGCTCACTCTTTAAAAAACATCAGATAATTCATCTAGGAGAGAAACAATATAAATGTGATGT  737

Query  741  ATGCGGCAAGGACTTTCATCAGAAGCGATACCTTGCATGCCA---TAGATGTCACACTGGTGAG----------  801
            |||.|||||.||||||.||||||||||||||||||||..|||   |||||||||||||||||||          
Sbjct  738  ATGTGGCAAAGACTTTAATCAGAAGCGATACCTTGCACACCATCGTAGATGTCACACTGGTGAGAAACCTTACA  811

Query  802  --------------------------------------------------------------------------  801
                                                                                      
Sbjct  812  TGTGTAATAAATGTGGCAAGGTTTTTAATAAAAAAGCATACCTTGCACGTCATTATAGACGTCATACTGGAGAA  885

Query  802  AATCCTTACAAGTGTAATGAGTGTGGCAAGACATTCAGTCACAATTCAGCCCTGTTAGTTCACAAGGCAATTCA  875
            ||.|||||||||||||||||||||||||||||.||||||.||||.||||||||.||||||||||||.|||||||
Sbjct  886  AAACCTTACAAGTGTAATGAGTGTGGCAAGACGTTCAGTGACAAGTCAGCCCTCTTAGTTCACAAGACAATTCA  959

Query  876  TACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAACAATCAAACCTTGCACGTCATC  949
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  960  TACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAACAATCAAACCTTGCACGTCATC  1033

Query  950  ATAGAG--------------------------------------------------------------------  955
            ||||||                                                                    
Sbjct 1034  ATAGAGTTCATACTGGAGAGAAACCTTACCAATGTAAAGAATGTGACAAAGTTTTCAGTCGCAAATCATACCTT  1107

Query  956  --------------------------------------------------------------------------  955
                                                                                      
Sbjct 1108  GAAAGACATAGGAGAATTCACACTGGTGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCAGACATGA  1181

Query  956  --------------------------------------------------------------------------  955
                                                                                      
Sbjct 1182  TTCACACCTGGCACAGCATATTGTAATTCACACTAGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAAACGT  1255

Query  956  --------------------------------------------------------------------------  955
                                                                                      
Sbjct 1256  TTGGTGAAAATTCAGCCCTCTTAGTTCACAAGACAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGT  1329

Query  956  ----------------------------------------------TTCATACTGGAGAGAAACCTTACAAATG  983
                                                          ||||||||||||||||||||||||||||
Sbjct 1330  GGCAAGGTTTTCAATCAACAATCAAACCTTGCACGTCATCATAGACTTCATACTGGAGAGAAACCTTACAAATG  1403

Query  984  TGAAGAATGTGACAAAGTTTTCAGTCGCAAATCACACCTTGAAAGACATAGGAGAATTCACACTGGAGAGAAAC  1057
            |.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||
Sbjct 1404  TAAAGAATGTGACAAAGTTTTCAGTCGCAAATCACACCTTGAAAGACATAGGAGAATTCACACTGGTGAGAAAC  1477

Query 1058  CATACAAATGTAAGGTTTGTGACAAGGCTTTCAGACGTGATTCACACCTGGCACAACATACTGTAATTCACACT  1131
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478  CATACAAATGTAAGGTTTGTGACAAGGCTTTCAGACGTGATTCACACCTGGCACAACATACTGTAATTCACACT  1551

Query 1132  GGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCGTTCAAAATTCATCTCTTGTAATGCATAAGGT  1205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552  GGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCGTTCAAAATTCATCTCTTGTAATGCATAAGGT  1625

Query 1206  CATTCATACTGGAGAGAAACGTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCACAAATCAAACCTTGCAT  1279
            |||||||||||||||||||||||||||||||||||||||||||||...|||||||||||||||||.||||||||
Sbjct 1626  CATTCATACTGGAGAGAAACGTTACAAGTGTAATGAATGTGGCAAAAGTTTTAATCACAAATCAAGCCTTGCAT  1699

Query 1280  GTCATCGTAGACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCGAAAATCA  1353
            .|||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||....|.|.|||
Sbjct 1700  ATCATCATAGACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAGGACACAGTCA  1773

Query 1354  AACCTTGAACGTCATCATAGACTTCATACTGGAAAGAAATCT--------------------------------  1395
            .|.||||.|.|||||||||||||||||||||||.|||||.||                                
Sbjct 1774  CAACTTGCATGTCATCATAGACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCAA  1847

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1848  TATCAAATCACACCTTGAAATACATAGGAGAGTTCATACTGGAGAGAAACCATACAAATGTAGGGTTTGCGACA  1921

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1922  AGGCTTTTGGGCGTGATTCATACCTTGCACAACATCAGAGAGTTCACACTGGAGAGAAACCATACAAATGTAAG  1995

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1996  GTTTGTGACAAGGCTTTCAAGTGTTACTCACACCTGGCACAACATACTAGAATTCATACTGGAGAGAAACCTTT  2069

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2070  CAAGTGTAGTGAGTGTGGCAAAGCCTTTCGTGCACAGTCAACACTTATTCACCATCAGGCAATCCATGGTGTAG  2143

Query 1396  -----------  1395
                       
Sbjct 2144  GGAAACTTGAC  2154

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