Nucleotide Global Alignment

Description

Query:
ccsbBroad304_08581
Subject:
NM_001369765.1
Aligned Length:
2165
Identities:
1132
Gaps:
889

Alignment

Query    1  ATGGCTCTTCCTCAGGGTCTACTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GGACCCTGCTCAGAGGACTCTATACAGAGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATACCT  148
                                              |||||||||||||||||||||||||||||||||||||.||
Sbjct    1  ----------------------------------ATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATATCT  40

Query  149  CTTCCAAATGCATGATGAAGATGTTCTCATCAACAGGACAAGGCAATACAGAAGTGGTCCACACAGGGACATTG  222
            |||||||||||||||||||||..||||..||||||||.||||||||||||||||.|.|||||||||||||||||
Sbjct   41  CTTCCAAATGCATGATGAAGACATTCTTCTCAACAGGGCAAGGCAATACAGAAGCGTTCCACACAGGGACATTG  114

Query  223  CAAATACATGCAAGTCATCACATTGGAGATACTTGCTTCCAGGAAATTGAGAAAGATATTCATGACTTTGTGTT  296
            ||||.|||.|||||||||||||||||||||..||||||||||.|||||||||||||.|||||||.|||...|||
Sbjct  115  CAAAGACAAGCAAGTCATCACATTGGAGATTTTTGCTTCCAGAAAATTGAGAAAGACATTCATGGCTTCCAGTT  188

Query  297  TCAGTGGCAAGAAAATGAAACAAATGGCCATGAAGCACTCATGACAAAAATCAAAAAGTTGA-TGAGTAGTACA  369
            |||||||.|||||.||||||||||||.|||||.|||||.|||||||.||||||||.|||||| || ||||||||
Sbjct  189  TCAGTGGAAAGAAGATGAAACAAATGACCATGCAGCACCCATGACAGAAATCAAAGAGTTGACTG-GTAGTACA  261

Query  370  GAGCGACATGATCAAAGGCATGCTGGAAACAAACCTATTAAAAATGAGCTTGGATCAAGCTTTCATTCGCATCT  443
            |..|.|||||||||||||||||||||||||||.|.|||||||.||.|||||||||.||||||||||||||||||
Sbjct  262  GGCCAACATGATCAAAGGCATGCTGGAAACAAGCATATTAAAGATCAGCTTGGATTAAGCTTTCATTCGCATCT  335

Query  444  GCCTGAAGTGCACATATTTCACCCCGAAGGGAAAATTGGTAATCAAGTTGAGAAGGCTATCAACGATGCTTTCT  517
            |||||||.|||||||||||||.||.||||||||||||||||||||||||||||||.||||||||.||||||.||
Sbjct  336  GCCTGAACTGCACATATTTCAGCCTGAAGGGAAAATTGGTAATCAAGTTGAGAAGTCTATCAACAATGCTTCCT  409

Query  518  CAGTTTCAGCATCCCAACGAATTTCCTGTAGGCCAAAAACTCGTATTTCTAATAAGTATAGGAATAATTTCCTC  591
            ||||||||.||||||||.||||||..||||||||.|||||.|.||||||||||||||||.|.|||||||.||||
Sbjct  410  CAGTTTCAACATCCCAAAGAATTTGTTGTAGGCCCAAAACCCATATTTCTAATAAGTATGGAAATAATTCCCTC  483

Query  592  CAGTCTTCATTACTCACACAAAAACGGGAAGTACACACAAGAGAAAAATCTTTCCAACGTAATGAGAGTGGCAA  665
            ||.||||||||||||||||||||||||.|.|||||||..||||||||||||||||||.|||.||||||||||||
Sbjct  484  CATTCTTCATTACTCACACAAAAACGGAATGTACACATGAGAGAAAAATCTTTCCAATGTATTGAGAGTGGCAA  557

Query  666  AGCCTTTAATGGTAGCTCACTCTTAAAAAAACATCAGATAATCCATTTAGGAGACAAACAGTATAAATGTGATG  739
            |.||||||||.||||||||||.|||||||||||||||||||.|||.||||.|||.|||||.|.|||||||||||
Sbjct  558  ATCCTTTAATTGTAGCTCACTTTTAAAAAAACATCAGATAACCCACTTAGAAGAGAAACAATGTAAATGTGATG  631

Query  740  TATGCGGCAAGGACTTTCATCAGAAGCGATACCTTGCATGCCA---TAGATGTCACACTGGTGAGAATCCTTAC  810
            |||..|||||||..|||.|||||||||||||||||||||||||   |||||.|||||.||.||||||.||||||
Sbjct  632  TATATGGCAAGGTATTTAATCAGAAGCGATACCTTGCATGCCATCGTAGATCTCACATTGATGAGAAACCTTAC  705

Query  811  AAGTGTAATGAGTGTGGCAAGACATTCAGTCACAATTCAGCCCTGTTAGTTCACAAGGC---------------  869
            ||||||||||||||||||||||..||..||||||||.||.||||.||..||||||||||               
Sbjct  706  AAGTGTAATGAGTGTGGCAAGATCTTTGGTCACAATACATCCCTCTTCCTTCACAAGGCGCTTCATACTGCAGA  779

Query  870  --------------------------------------------------------------------------  869
                                                                                      
Sbjct  780  CAAACCTTATGAATGTGAAGAATGTGACAAAGTTTTCAGTCGCAAATCACACCTTGAAACACATAAGATAATTT  853

Query  870  --------------------------------------------------------------------------  869
                                                                                      
Sbjct  854  ATACTGGAGGGAAACCATACAAATGTAAGGTTTGTGACAAAGCTTTCACATGTAATTCATACCTAGCAAAACAT  927

Query  870  -----AATTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAACAATCAAACCT  938
                 ||||||.|||||||||||||||||||||||||||||||||||||||||||||||||.||..||||.|||
Sbjct  928  ACTATAATTCACACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCGACTGTCAACCCT  1001

Query  939  TGCACGTCATCATAGAGTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCAGTCGCA  1012
            ||||||.||||.|||..||||||||||||||||||||||..||||||||||||||||.||||||||||||||||
Sbjct 1002  TGCACGCCATCGTAGGCTTCATACTGGAGAGAAACCTTATGAATGTGAAGAATGTGAAAAAGTTTTCAGTCGCA  1075

Query 1013  AATCACACCTTGAAAGACATAGGAGAATTCACACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCT  1086
            |||||||.|||||||||||||.|||.|||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076  AATCACATCTTGAAAGACATAAGAGGATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCT  1149

Query 1087  TT--CAGACGTGATTCACACCTGGCACAACATACTGTAATTCACACTGGAGAGAAACCTTACAAGTGTAATGAG  1158
            ||  ||.|  |.|||||.||||||||.||||||.|.|||||||||||||||||||.|||||||||||||||||.
Sbjct 1150  TTTGCATA--TAATTCATACCTGGCAAAACATAGTATAATTCACACTGGAGAGAAGCCTTACAAGTGTAATGAA  1221

Query 1159  TGTGGCAAGACCTTCGTTCAAAATTCATCTCTTGTA----ATGCATAAGGTCATTCATACTGGAGAGAAACGTT  1228
            |||||||||...||...||||.|.|||.||||||.|    || ||||  |.| |||||||||.||||||||..|
Sbjct 1222  TGTGGCAAGGTTTTTAATCAACAATCAACTCTTGCACGCCAT-CATA--GAC-TTCATACTGCAGAGAAACCAT  1291

Query 1229  ACAAGTGTAATGAATGTGGCAAGGTTTTTAATCA----CAAATCAAACCTTG----------------------  1276
            ||||.|||.|.|||||||.|||.||||    |||    |||||||.||||||                      
Sbjct 1292  ACAAATGTGAAGAATGTGACAAAGTTT----TCAGGTGCAAATCACACCTTGAAAGACATAGGAGGATTCATAC  1361

Query 1277  -----------------------------------------------------CATG---------TCATCGTA  1288
                                                                 ||||         .||||..|
Sbjct 1362  TGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCCGGAGTGATTCATGCCTTACAGAACATCAGA  1435

Query 1289  GACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCGAAAATCAAACCTTGAA  1362
            ||.|||||||||||||||||||.||||.||||||||||||||||||||||||||.|..||||.|||||||||.|
Sbjct 1436  GAGTTCATACTGGAGAGAAACCATACATGTGTAATGAATGTGGCAAGGTTTTTAGTACAAAAGCAAACCTTGCA  1509

Query 1363  CGTCATCATAGACTTCATACTGGAAAGAAATCT-----------------------------------------  1395
            .|||||||||.|||||||||||.|.|||||.|.                                         
Sbjct 1510  TGTCATCATAAACTTCATACTGCAGAGAAACCGTACAAATGTGAAGAATGTGAGAAAGTTTTCAGTCGCAAATC  1583

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1584  ACACATGGAAAGACATAGGAGGATTCATACTGGAGAGAAACCGTACAAATGTAAGGTTTGTGACAAGGCTTTCC  1657

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1658  GGAGGGATTCACACCTGGCACAACATCAGAGAGTTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGC  1731

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1732  AAGACCTTCCGTCAGACATCATCGCTTATAATCCATCGTAGGCTTCATACTGGAGAGAAACCTTACAAGTGTAA  1805

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1806  TGAGTGTGGCAAGACCTTCAGTCAGATGTCATCCCTCGTATACCATCATAGGCTTCATAGTGGAGAGAAACCTT  1879

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1880  ACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAACAAGCACACCTTGCACAGCATCAGAGAGTTCATACTGGA  1953

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1954  GAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCAGTCAGATGTCAAACCTTGTATACCATCATAGACT  2027

Query 1396  -------------------  1395
                               
Sbjct 2028  TCATAGTGGAGAGAAACCT  2046

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