Nucleotide Global Alignment

Description

Query:
ccsbBroad304_08581
Subject:
NR_003578.1
Aligned Length:
3050
Identities:
1220
Gaps:
1690

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGTTTAGCGTAAACCGGGAAGCGGATCGCGTGGAGTGAAAGTCACCGCAGCGGAGATGGACAAACCATGTGGGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCCCTCCAGGTGTGTGCGACCATGAAATGGGAGACTAGCAGGACCCACGTTGGCCAACCGTGGACCTGGTCCCT  148

Query    1  -----------------------------------------------ATGGCTCTTCCTCAGG-GTC-TACTGA  25
                                                           |.|||    |..|.|| ||| .|||||
Sbjct  149  CCAGTAGGAGTCGTGAGCCAGCTGAATTTGAATGCAAAGATGGAGCAAGGGC----CGACTGGAGTCACACTGA  218

Query   26  CATTCA-------GGGATGTGGCCA----TAGAATTCTCTCAGGAGGA----GTGGAAATGCCTGGA----CCC  80
            |||.||       ...|||.||.||    .||||  ..|..||.||||    |.|.||||| |||||    ||.
Sbjct  219  CATCCACCCCCATAACATGGGGACAGATCAAGAA--AACAAAGCAGGAAGCTGAGAAAATG-CTGGAGCATCCA  289

Query   81  TG--------------------------CTCAGAGGACT-CTATACAGAGACGTGATGCTG------GAG----  117
            ||                          ||..|||||.| .|.|.||.|.||    |.|||      |||    
Sbjct  290  TGTGCTTGGCCATGTTAGCAGTAGTGTCCTGTGAGGATTGATTTCCAAAAAC----TCCTGTTACATGAGGAAG  359

Query  118  ---------------AATTATAGGAACCTGG-----TCTCCCT-GGATACCTCTTCCAAATGCATGATGAAGAT  170
                           ||..|.||||.||.||     |||.||| .|.||.|||||||||||||||||..|.||.
Sbjct  360  ACACCAAGAAGAGCAAAGAAAAGGAGCCAGGGTGGCTCTTCCTCAGCTATCTCTTCCAAATGCATGACAAGGAA  433

Query  171  GTTCTCATCAACAGGACAAGGCAATACAGAAGTGGTCCACACAGGGACATTGCAAATACATGCAAGTCATCACA  244
            |||||||||||.|.|.||||||||||||||||||.|||||||||||||||||||||.|||.|||||||||||||
Sbjct  434  GTTCTCATCAAGAAGGCAAGGCAATACAGAAGTGTTCCACACAGGGACATTGCAAAGACAAGCAAGTCATCACA  507

Query  245  TTGGAGATACTTGCTTCCAGGAAATTGAGAAAGATATTCATGACTTTGTGTTTCAGTGGCAAGAAAATGAAACA  318
            .|||||||..||.||||||||||||||||||||||.||||.|||||||.||||||||||||||||.||||||.|
Sbjct  508  CTGGAGATTTTTCCTTCCAGGAAATTGAGAAAGATTTTCAGGACTTTGAGTTTCAGTGGCAAGAAGATGAAAGA  581

Query  319  AATGGCCATGAAGCACTCATGACAAAAATCAAAAAGTTGATGAGTAGTACAGAGCGACATGATCAAAGGCATGC  392
            ||||||||||||||||||||||||.|.||.||||||||||...|||.||||||..||.||||||||||||||||
Sbjct  582  AATGGCCATGAAGCACTCATGACAGAGATAAAAAAGTTGACAGGTAATACAGACTGATATGATCAAAGGCATGC  655

Query  393  TGGAAACAAACCTATTAAAAATGAGCTTGGATCAAGCTTTCATTCGCATCTGCCTGAAGTGCACATATTTCACC  466
            |||||||||||||||||||.||.||||||||||||||||||||||.||||||||||||.||||.|||||.||..
Sbjct  656  TGGAAACAAACCTATTAAAGATCAGCTTGGATCAAGCTTTCATTCACATCTGCCTGAACTGCATATATTGCAGA  729

Query  467  CCGAAGGGAAAATTGGTAATCAAGTTGAGAAGGCTATCAACGATGCTTTCTCAGTTTCAGCATCCCAACGAATT  540
            .|.||||||||||||.||.|||||.|||||||.||.||||.|||||||.|||||||||||||||||||.|||||
Sbjct  730  GCAAAGGGAAAATTGATAGTCAAGATGAGAAGTCTGTCAATGATGCTTCCTCAGTTTCAGCATCCCAAAGAATT  803

Query  541  TCCTGTAGGCCAAAAACTCGTATTTCTAATAAGTATAGGAATAATTTCCTCCAGTCTTCATTACTCACACAAAA  614
            ||.||||..||.|||||.|.||||||||||||||||.||||||||||||||||                     
Sbjct  804  TCTTGTATTCCTAAAACCCATATTTCTAATAAGTATGGGAATAATTTCCTCCA---------------------  856

Query  615  ACGGGAAGTACACACAAGAGAAAAATCTTTCCAACGTAATGAGAGTGGCAAAGCCTTTAATGGTAGCTCACTCT  688
               |||||.|||||..||||||||||||||||||.||||||||||||||||||||||||||.||||||||||.|
Sbjct  857  ---GGAAGCACACATGAGAGAAAAATCTTTCCAATGTAATGAGAGTGGCAAAGCCTTTAATTGTAGCTCACTGT  927

Query  689  TAAAAAAACATCAGATAATCCATTTAGGAGACAAACAGTATAAATGTGATGTATGCGGCAAGGACTTTCATCAG  762
            ||||||||..|||||||||||||||||||||.|||.|.||||||||||||.||||.|||||||.||||.|||||
Sbjct  928  TAAAAAAATGTCAGATAATCCATTTAGGAGAGAAAAAATATAAATGTGATATATGTGGCAAGGTCTTTAATCAG  1001

Query  763  AAGCGATACCTTGCATGC---CATAGATGTCACACTGGTGAGAATCCTTACAAGTGTAATGAGTGTGGCAAGAC  833
            ||||||||||||||||.|   |||||||||||||||||||||||.|||||||||||||||.|||||||||||||
Sbjct 1002  AAGCGATACCTTGCATACCATCATAGATGTCACACTGGTGAGAAACCTTACAAGTGTAATCAGTGTGGCAAGAC  1075

Query  834  ATTCAGTCACAATTCAGCCCTGTTAGTTCACAAGGCAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAAT  907
            .||||||.||||.|||.||||..||.||||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct 1076  CTTCAGTTACAAGTCATCCCTTGTAATTCACAAGGCAATTCATACTGGAGAGAAACCTCACAAGTGTAATGAAT  1149

Query  908  GTGGCAAGGTTTTTAATCAACAATCAAACCTTGCACGTCATCATAGAGTTCATACTGGAGAGAAACCTTACAAA  981
            ||||||||||||||||||||.||.||.|.||||||.|||||||||||.||||||||||||||||||||||||||
Sbjct 1150  GTGGCAAGGTTTTTAATCAAAAAGCATATCTTGCAAGTCATCATAGACTTCATACTGGAGAGAAACCTTACAAA  1223

Query  982  TGTGAAGAATGTGACAAAGTTTTCAGTCGCAAATCACACCTTGAAAGACATAGGAGAATTCACACTGGAGAGAA  1055
            |||||||||||||||||||||||.||||||.|||||||||||||||||||||||||||||||.|||||||||||
Sbjct 1224  TGTGAAGAATGTGACAAAGTTTTTAGTCGCTAATCACACCTTGAAAGACATAGGAGAATTCATACTGGAGAGAA  1297

Query 1056  ACCATACAAATGTAAGGTTTGTGACAAGGCTTTCAGACGTGATTCACACCTGGCACAACATACTGTAATTCACA  1129
            |||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct 1298  ACCGTACAAATGTAAGGTTTGTGACAAGGCTTTCAGACGTGATTCACACCTGGCACAACATATTGTAATTCACA  1371

Query 1130  CTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCGTTCAAAATTCATCTCTTGTAATGCATAAG  1203
            |||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 1372  CTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTTGTTCAAAATTCATCTCTTGTAATGCATAAG  1445

Query 1204  GTCATTCATACTGGAGAGAAACGTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCACAAATCAAACCTTGC  1277
            |||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1446  GTCATTCATACTGGAGAGAAATGTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCACAAATCAAACCTTGC  1519

Query 1278  ATGTCATCGTAGACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCGAAAAT  1351
            ||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct 1520  ATGTCATCATAGACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATTGAAAAT  1593

Query 1352  CAAACCTTGAACGTCATCATAGACTTCATACTGGAAAGAAATCT------------------------------  1395
            ||||||||||||.||||||||||.||||||..|||.|.|||.||                              
Sbjct 1594  CAAACCTTGAACATCATCATAGAGTTCATATCGGAGAAAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTC  1667

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1668  AATTTCAATTCACGCCTTGAAATACATAGGAGAGTTCATACTGGAGAGAAACCATAGAAATGTAAGGTTTGTGA  1741

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1742  CAAGGCATTCGGGTGTGATTCACACCTGGCACAACATACTAGAATTCACACTGGAGAGAAACCGTGCAAGTGTG  1815

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1816  ATGAGTGTGACAGAGCCTTCAGTGGTCAGTCAACACTTATTCACCATCAAGCAATCCATGTCATAGGGAAACTT  1889

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1890  TACTAATGTAATGATTGTCACAAAGTCCTCAGTAATGCTACAACCATTGCAAATTATTGGAGAATGCATAATGA  1963

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1964  AGTGAGAACTTACAAGTGTTATAAATGTGGCAAATTTTTCAGACTTCGTTCATACCTTGCAGTTTATCAGCGAA  2037

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2038  CTCATACTGGAGAGAAACCTTACAAATGTGATGATTGTGGCAAGGTCTTCAGTCAAGCTTCATCTTATGCAAAA  2111

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2112  CACAGGTGAATTCATACAAGAAAGAAACCTCACAAGGGTGATGATTGTGTCAAAGCCTTTATTTCAGGTTCATG  2185

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2186  CCTCATTACACATCAGAGAATCCATACTAGACAGAGATCTTACAAAAGTCATATGTGTGGCAAGATCTTTAGTC  2259

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2260  TGAGGTCACTCCTTGCAGGACATCAGGAAATTCATTTTTGAGGTAATAATTTCAAATGCAATGAGTATAGCAAA  2333

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2334  CCATCAAGCACAATTGATGTTAGATTCAAATCAGCATTGAGTTCAGTTTGAGTTGACTTAACATTGAGTTCAAG  2407

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2408  TATTTGTTGAGATTAAAGTGTTTATGTTAAGAGGATTAGGCCAGGTGCGGTGGCTCACACCTGTAATCCCAGCA  2481

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2482  CTTTGGGAGGCCAAGACAGGTAGATCACTTGAGATCAGGAGTTTGAGAGCAGCCTGGCCAACAGAGGTGAGCAC  2555

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2556  CTTTCCCAGTCTGTTTTTTGTTTCTTCAACAAAAACTGATAGAGATTTTTATGGGTATTGTGTTGAATCAAAAT  2629

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2630  CACATTGGGTTATGTAATCATTTAACAGTATTAATTTTTCCAAAACATCAATATGGGTTATATCTTTATATATG  2703

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2704  TTTTTAATCATTTTGATCAATGTTTGTAGATTTCAATGTATGAATTTCTCACTTCTTTCCATTTATTCCTATTT  2777

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2778  CTTACTTTAAGTTCTCTAGCAAATGGAAGTGTTTTTAAATTTTCATTTAAAATTGTTTATTGTTAATGTATGAA  2851

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2852  AATTCAACGAATTTTTGGTGCTGATATTGTATTGTGCAAATCTACTGATGTGTTTATTAGTCACAGTAGTATTT  2925

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2926  TGGTTGACTCTTTGTGATTTTCTACACAGAAGATCATGTCATCTACAAAAAATATAATTTTACTTTTTCTGAAA  2999

Query 1396  ----------------  1395
                            
Sbjct 3000  AAAAAAAAAAAAAAAA  3015

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