Nucleotide Global Alignment

Description

Query:
ccsbBroad304_08581
Subject:
NR_145445.2
Aligned Length:
5229
Identities:
1210
Gaps:
3843

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGACGCGCGCAAACCCGGAAGCAGATCGCGTGGAGTGAAGGTCCCTCAGCGGCGCGATTGACATCTAAAGACTC  74

Query    1  ------------------------------------------------ATGGCTCTTCCTCAGGGTCTACTGAC  26
                                                            |||||||||||||||||||||.||||
Sbjct   75  TTGGTACATGAGGAAGAAACCCGGAAAAGGAAAGCAGAGGAGTCAGGGATGGCTCTTCCTCAGGGTCTATTGAC  148

Query   27  ATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACA  100
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  ATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACA  222

Query  101  GAGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATACCTCTTCCAAATGCATGATGAAGATGTTC  174
            |.||||||||||||||||||||||||||||||||||||||||.||.||||||||||||||..||||||..||||
Sbjct  223  GGGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGGTATCTCTTCCAAATGCACAATGAAGGAGTTC  296

Query  175  TCATCAACAGGACAAGGCAATACAGAAGTGGTCCACACAGGGACATTGCAAATACATGCAAGTCATCACATTGG  248
            ||||||||||.|||||||||||||||||||.|||||||||||||||||||||.|||||.|.|||||||||||||
Sbjct  297  TCATCAACAGCACAAGGCAATACAGAAGTGATCCACACAGGGACATTGCAAAGACATGAACGTCATCACATTGG  370

Query  249  AGATACTTGCTTCCAGGAAATTGAGAAAGATATTCATGACTTTGTGTTTCAGTGGCAAGAAAATGAAACAAATG  322
            ||||..||.||||||||||||||||||||||||||||.||||||.||||||||||||||||.||||||.|||||
Sbjct  371  AGATTTTTCCTTCCAGGAAATTGAGAAAGATATTCATAACTTTGAGTTTCAGTGGCAAGAAGATGAAAGAAATG  444

Query  323  GCCATGAAGCACTCATGACAAAAATCAAAAAGTTGATGAGTAGTACAGAGCGACATGATCAAAGGCATGCTGGA  396
            ||||||||||||.||||||||||||||||||.||||||.||||||||||||.|.|||||||.||||||||||||
Sbjct  445  GCCATGAAGCACCCATGACAAAAATCAAAAAATTGATGGGTAGTACAGAGCAATATGATCACAGGCATGCTGGA  518

Query  397  AACAAACCTATTAAAAATGAGCTTGGATCAAGCTTTCATTCGCATCTGCCTGAAGTGCACATATTTCACCCCGA  470
            |||||.|||||||||.||.||||||||||||||||||||||.||||||.|||||.|.|||||||||||.|||.|
Sbjct  519  AACAAGCCTATTAAATATCAGCTTGGATCAAGCTTTCATTCACATCTGTCTGAACTCCACATATTTCAGCCCAA  592

Query  471  AGGGAAAATTGGTAATCAAGTTGAGAAGGCTATCAACGATGCTTTCTCAGTTTCAGCATCCCAACGAATTTCCT  544
            ||||||||||..|||||||||.||||||.|||||||||||||||.|||.||||||.||.|||||.|||||||.|
Sbjct  593  AGGGAAAATTAATAATCAAGTGGAGAAGTCTATCAACGATGCTTCCTCGGTTTCAACAGCCCAAAGAATTTCTT  666

Query  545  GTAGGCCAAAAACTCGTATTTCTAATAAGTATAGGAATAATTTCCTCCAGTCTTCATTACTCACACAAAAACGG  618
            |||||||.|||||.|.|||.||||||||.|||.||.|||||||.||..|.|.|||||||||||||||||.||.|
Sbjct  667  GTAGGCCCAAAACCCATATATCTAATAACTATGGGGATAATTTTCTGAATTATTCATTACTCACACAAAGACAG  740

Query  619  GAAGTACACACAAGAGAAAAATCTTTCCAACGTAATGAGAGTGGCAAAGCCTTTAATGGTAGCTCACTCTTAAA  692
            |||||||.||..||||||||||||||||||.|||.||||||||||||||||||||||..||||||||||||||.
Sbjct  741  GAAGTACGCATGAGAGAAAAATCTTTCCAATGTATTGAGAGTGGCAAAGCCTTTAATTATAGCTCACTCTTAAG  814

Query  693  AAAACATCAGATAATCCATTTAGGAGACAAACAGTATAAATGTGATGTATGCGGCAAGGACTTTCATCAGAAGC  766
            .|||||||||||.||.|||.|||||||.|||||.|||||||||||||||||.|.|||||.||||..||.|||||
Sbjct  815  GAAACATCAGATTATTCATCTAGGAGAGAAACAATATAAATGTGATGTATGTGACAAGGTCTTTATTCGGAAGC  888

Query  767  GATACCTTGCATGCCA---TAGATGTCACACTGGTGAGAATCCTTACAAGTGTAATGAGTGTGGCAAGACATTC  837
            |||||||||||.||||   |||||||||||||||||||||.|||||||||||||||||||||||||||.|.|||
Sbjct  889  GATACCTTGCACGCCATCGTAGATGTCACACTGGTGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGTCCTTC  962

Query  838  AGT-----------------------------------------------------------------------  840
            |||                                                                       
Sbjct  963  AGTCAGATGTCATCCCTTACATATCATCATCGACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGA  1036

Query  841  -------------CACAATTCAGCCCTGTTAGTTCACAAGGC-------AATTCATACTGGAGAGAAACCTTAC  894
                         |||||||||||||      |||| |||.|       |||||||||||||||||||||..|.
Sbjct 1037  CAAAGCTTTCAGACACAATTCAGCCC------TTCA-AAGACATAGGAGAATTCATACTGGAGAGAAACCACAT  1103

Query  895  AAGTGTAATGAATGTGGCAAGGTTTTTAATCAACAATCAAACCTTGCACGTCATCATAGAGTTCATACTGGAGA  968
            |||||||||||.|||||||||...||||.|||..|.|||.||||||||.|.||||.|||..|||||||||||.|
Sbjct 1104  AAGTGTAATGAGTGTGGCAAGACCTTTAGTCAGAAGTCATACCTTGCATGCCATCGTAGCATTCATACTGGAAA  1177

Query  969  GAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCAGTCGCAAATCACACCTTGAAAGACATAGGAGAATTC  1042
            ||||||||||.|||||||||||||||||||||.|||||||..|||||||.||||||||||.|||||||.||.||
Sbjct 1178  GAAACCTTACGAATGTGAAGAATGTGACAAAGCTTTCAGTTTCAAATCAAACCTTGAAAGTCATAGGATAACTC  1251

Query 1043  ACACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCAGACGTGAT-TCACACC------TGGC  1109
            |.||||||||||||||||||||.|||||.|.|||||.||||.|.|||||.|.| || ||| |||      ||.|
Sbjct 1252  ATACTGGAGAGAAACCATACAAGTGTAATGATTGTGGCAAGACCTTCAGTCAT-ATGTCA-ACCCTTACATGCC  1323

Query 1110  -------ACAACATACTG--------------------------------------------------------  1120
                   ||..|||||||                                                        
Sbjct 1324  ATCGTAGACTTCATACTGGAGAGAAACCTTACAAGTGTGAAGAATGTGATGAAGCTTTCCGTTTCAAATCAAGT  1397

Query 1121  ----------------TAATTCACACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCGTTCA  1178
                            .||||||.|.|||||||||||..|||||.||||||||||||||||||||||||..|||
Sbjct 1398  CTTGAAAGACATAGGAGAATTCATAATGGAGAGAAACTGTACAAATGTAATGAGTGTGGCAAGACCTTCAGTCA  1471

Query 1179  AAATTCATC-----------------------------------------------------------------  1187
            ..|.|.|||                                                                 
Sbjct 1472  GGAGTTATCCCTTACCTGCCATTGTAGACTTCATAGTGGAGAGAAACCTTGCAAGTGTGGAGAATGTGACAAGG  1545

Query 1188  -------------------TCTTGTAATGCATAAGGTCATTCATACTGGAGAGAAACGTTACAAGTGTAATGAA  1242
                               |||||.|||.|.|.||...||||||||||||||||||.||||.|||||||||||.
Sbjct 1546  CTTACAGTTTCAAATAAAATCTTGAAATACGTCAGAAAATTCATACTGGAGAGAAATGTTATAAGTGTAATGAT  1619

Query 1243  TGTGGCAAGGTTTTTAATCA------------------------------------------------------  1262
            |||||||||.|.||.|.|||                                                      
Sbjct 1620  TGTGGCAAGATCTTCAGTCATACGTCATCCATTGTATACCATCATAAATTTCATAGTGGAGAGAAACCTTACAA  1693

Query 1263  ------------------------------CAAATCAAACCTTGCATGTCATCGTAGACTTCATACTGGAGAGA  1306
                                          ||||||||||||||.|.|.|||.|.|||.||||.|||||.||||
Sbjct 1694  ATGTGAAGAATGTGATGAAGCTTTCAGTTTCAAATCAAACCTTGAAAGACATAGGAGAATTCACACTGGTGAGA  1767

Query 1307  AACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCGAAAATCAAACCTTGAACGTCATCATAGACTTCAT  1380
            |||||||||.|||||||...|||||||||...||.|.||..|.||||..||||..|.|.|||||||||||||||
Sbjct 1768  AACCTTACAGGTGTAATAGGTGTGGCAAGACCTTCAGTCATACATCATCCCTTACATGCCATCATAGACTTCAT  1841

Query 1381  ACTGGAAAGAAATCT-----------------------------------------------------------  1395
            ||||||.|||||.||                                                           
Sbjct 1842  ACTGGAGAGAAACCTTACAAATGTGAAGAATGTGATGAAACTTTCAGATACAAATCAAATCTTGAAAGACATAG  1915

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1916  GAGAATTCATAATGGAGAGAAACCGTACAAGTGTAATGAGTGTGGCAAGACCTTCAGTCAGAAGTCATGCCTTA  1989

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1990  CACGCCATCATAGACTTCATACTGGAAATAAATCTTATAAGTGTAATGAGTGTGGCAAGACCTTCAGTAAGGAG  2063

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2064  TTAACACATGCCATCATAGACGTCATACTGGAGAGAAACCTTAGAAGTGCAATGAGTGTGGCAAAACCTTTCAT  2137

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2138  AGGCAGTCAGCGCTTATTTACCATCAAGCAATCCATGGCAGAGGGAAACTTTACAAATGTAATGATTGTCACCA  2211

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2212  CGTCTTCAGTAATGCTACAACTATTGCAAATCATTGGAGAATCCATAATAAAGAGAGACCTTACAAGTGTGATA  2285

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2286  AATGTGACAAATTTTTCAGACATCGTTCATACCTTGCAGTTCACGGGCGAACTCATGCTGGAGAGAAACCTTAC  2359

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2360  AAATGTGAAGAATGTGATAAAGCTTTCAGATTCAAATCAAACCTTGAAAGTCATAGGAGAATTCATACTAGAGA  2433

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2434  GAAACCTTACAAGTGTAATGAGTGTGGTAAGATGTTCAGTCAAAATTCGGCCCTTGTAATTCATAAGGCAATTC  2507

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2508  ATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCGCAAAGCAAAGCTTGCATGTCAT  2581

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2582  CATAGACTTCATACTGGAGAGAACGCTTGCAAGTGTAATAAATGTGGCGAGGTTTTTAATCAACAAGCACACCT  2655

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2656  TGCACGTCATCATAGAACTCATACTGGAGAGAAACATTACAAGTGTAATGAGTGTGGCAAGACCTACTCTCACA  2729

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2730  ATTCAGTCCTTGTAATTCATAAGACAATTCACACTGGGGAGAAACCTTACAAGTGTAATGAGTGTGGCAAAACC  2803

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2804  TTCCATCACAATTCAGTCCTTGTAATTCATAAAACAATTCATACTGGAGAGAAACAAGCGTAATGAATGTGGCG  2877

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2878  AGGTTTTCAATCAACAAGCACACGTTGCACGTCATCATAGAATTCATACTGGAGAGAAACCTTAGAAATGTGAA  2951

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2952  GAATGTGACAAAGTTTACAGTCGCAAATCAAACCTCGAAAGACAGGAGAATTCATACTGGAGAGAAACCATAAA  3025

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3026  AATGTAAGAGTTTTTGACAAGGCTTTCGGACGTGATTCACACCTGGCACAACATCCCAGAGTTCACACTGGAGA  3099

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3100  GAAACCTTACAAGTGTAATGAGTGTGTCAAAGCCTTTAGTGGGCAGTCAACACTTATTCACCATCAGGCAATCC  3173

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3174  GTAGTGTAGGGAAACTTGACTAACGTAATGATTCTCACAACGTCTTCAGTAATGCTACAACCATTGTAAATCAC  3247

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3248  TGGAGAAGCCATAATGAAGAGAGATCTTACAAATGTAATAATTGTGGCAAATTTTTCAGACATCGTTCATACAT  3321

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3322  TGCCGTTCATTGGCGAACTCATGCTGGAGAGAAATCTTACAATGTCATGATTGTGGCAAGGTCTTCAGTCAAGC  3395

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3396  TTCATCTTTTGCAAAACAGGAGAATTCATACAGGAGAGAAACCTCACAAGTGTGATGATCGTGGCAAAGCCTTT  3469

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3470  ACTTCACATTCTCACCTCATTAGACATCAGAGAATCCATACTGGACAGAAATCTTACAAATGTCATCAGTGTGG  3543

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3544  CAAGGTCTTCAGTCCGACTTCACTCCTTGCAGAATATCAGAAAATTCATTTTTCAGGATTTCTATGATGACTGG  3617

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3618  ATTTTGAATTTTGTGGAACGCTTTTTCTCCATCTACTAAGGTGATGTGGTTTTAATCTTTCATTCTGTTCTAGT  3691

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3692  GGTATATAACATTGATTTGCTTGAATATGTTGAACCATCCTTGCATCCCAGAAATAACTGGCACTTGAATATCT  3765

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3766  ACATTTTTTTAATATCCTCTTGAATACAGTTTTCTAGGACAAGGGATCTTCAAGAAGTTCTGGAAAAATACATA  3839

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3840  TTATGAGAAAATTGTGCATGAATTTCACAATTTTTGCACCAAAATAAACTAGTGCTAGTCTGTTATAACATGTC  3913

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3914  TGAACAGGCTCTAGTTTGATGCCCTCAAAAGGATAAGACATGAGTATAAAAAGAGACTCCATCAAAGCAATATA  3987

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3988  AATTCTGATGAAATTTAAACAAGAAGAAACATTAAATTTATGATGAGACCAGATGCAGTGGCTCAGGCCTGTAA  4061

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4062  TCCCAGCATTTTCAGAGGCTGAGACAGGTGGGCCACATGAGCCCAGGTATTCAAGACCAGCCTGGGAAACGTGG  4135

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4136  GGAAATCCCCTTTTCTACAAAAAATACAAAAATTAGCTGGGCATGGTGGCACATGCCTGCCGTCTCAGTTATTG  4209

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4210  TGAAGTCTGTGCAGGGAGGATGGCATGAACCTGGGAGGTCAAGATTGCAGTGAGCTATGATCATGCCACTGCAC  4283

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4284  TCCAGCATGGGTGATGGAGAGAGATACTGTCTTAAAAAAAGAATACTTGTGGTAACGTTTGGGTAGAGGAATAA  4357

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4358  TGAAATCATTGATGCTTTATAAAAAGGTTATGGGGACAATGCCCAAAAGAAATAAACAGTTTGTAAACGGATAA  4431

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4432  CTTATTTTGAGTTAGGGCAAGACAATGTTGACAGTGATGCATGAAGCAGCAGGCAGACCTTCCACATCATTTTT  4505

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4506  ACAGAAAAAAAAATTAATCTTGTTCATGCTGCAATGAAGAGGACTGACAGCAAACAGCAGAAACATAGTCAGAA  4579

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4580  TTTAGAGAACAGCCTGGTTAACATGGTGAAACACCATCTCTAGTAAAAATACAAAAATTAGCTCAGCATGGTGG  4653

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4654  CATGCGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGGGAATCTCTTGAACCCAGGAGGTGGAGGATGCA  4727

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4728  GTGAACTGAGATGGCAACATTACACTCTAGCCTGAGCAACAAGAGCAAAACTCCATCTCAAAAAAAAAAAAATT  4801

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4802  GTCAAGTTCCTTCTCTTCCATTCTTTGCCATCGTGGTGTGTGCTTGACTCTGCTTCTTGCCACATCTTCTCAGA  4875

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4876  AGACTTTCAGGATTAAGCGATTCCTGGCCAAGAAACAAAAGCAAAACCATCCCACTCCCCTGTGGATTCAGATC  4949

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4950  AAAACTGGTAATAAAATCAGGTACGACTCCAAAAGGAGACATTGGAGAAGAACCAAGCTGGGTCTATAAGGAAT  5023

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 5024  TGCATGTGAGATGGCACACATATTTATGCTGTCTGAGCATCACAATCACGTTACCATATCAAGCTGAAAATGTC  5097

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 5098  ACCACTATCTGGACAGTTGGACATGTTTTATTGGGAATATGTTTTTTCTCTGTAAATTTGTTATAAACGCATTG  5171

Query 1396  -------------------------------------------------  1395
                                                             
Sbjct 5172  GTTGGCTGTGTTCAGTAATAAACGTGAGACTTTTCATTTCAAAACAAAA  5220

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