Nucleotide Global Alignment

Description

Query:
ccsbBroad304_08581
Subject:
XR_001753716.2
Aligned Length:
3785
Identities:
1391
Gaps:
2390

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCAGACCAGGAAGCGGATCCCGTGGAGTGAAGGTCGCACCGCGGCGGATTGACTTCTAAAGACTTGGTACGTGA  74

Query    1  -------------------------------------------ATGGCTCTTCCTCAGGGTCTACTGACATTCA  31
                                                       ||||||||||.||||||||||||||||||||
Sbjct   75  GGAAAAAACACGGAAGAGGAAGAGGAAAGCAAAGGAGTCAGGGATGGCTCTTCTTCAGGGTCTACTGACATTCA  148

Query   32  GGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACAGAGAC  105
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACAGAGAC  222

Query  106  GTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATACCTCTTCCAAATGCATGATGAAGATGTTCTCATC  179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATACCTCTTCCAAATGCATGATGAAGATGTTCTCATC  296

Query  180  AACAGGACAAGGCAATACAGAAGTGGTCCACACAGGGACATTGCAAATACATGCAAGTCATCACATTGGAGATA  253
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  AACAGGACAAGGCAATACAGAAGTGGTCCACACAGGGACATTGCAAATACATGCAAGTCATCACATTGGAGATA  370

Query  254  CTTGCTTCCAGGAAATTGAGAAAGATATTCATGACTTTGTGTTTCAGTGGCAAGAAAATGAAACAAATGGCCAT  327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CTTGCTTCCAGGAAATTGAGAAAGATATTCATGACTTTGTGTTTCAGTGGCAAGAAAATGAAACAAATGGCCAT  444

Query  328  GAAGCACTCATGACAAAAATCAAAAAGTTGATGAGTAGTACAGAGCGACATGATCAAAGGCATGCTGGAAACAA  401
            |||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GAAGCACTCATGACAAAAACCAAAAAGTTGATGAGTAGTACAGAGCGACATGATCAAAGGCATGCTGGAAACAA  518

Query  402  ACCTATTAAAAATGAGCTTGGATCAAGCTTTCATTCGCATCTGCCTGAAGTGCACATATTTCACCCCGAAGGGA  475
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  ACCTATTAAAAATGAGCTTGGATCAAGCTTTCATTCGCATCTGCCTGAAGTGCACATATTTCACCCCGAAGGGA  592

Query  476  AAATTGGTAATCAAGTTGAGAAGGCTATCAACGATGCTTTCTCAGTTTCAGCATCCCAACGAATTTCCTGTAGG  549
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  AAATTGGTAATCAAGTTGAGAAGGCTATCAACGATGCTTTCTCAGTTTCAGCATCCCAACGAATTTCCTGTAGG  666

Query  550  CCAAAAACTCGTATTTCTAATAAGTATAGGAATAATTTCCTCCAGTCTTCATTACTCACACAAAAACGGGAAGT  623
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CCAAAAACTCGTATTTCTAATAAGTATAGGAATAATTTCCTCCAGTCTTCATTACTCACACAAAAACGGGAAGT  740

Query  624  ACACACAAGAGAAAAATCTTTCCAACGTAATGAGAGTGGCAAAGCCTTTAATGGTAGCTCACTCTTAAAAAAAC  697
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  ACACACAAGAGAAAAATCTTTCCAACGTAATGAGAGTGGCAAAGCCTTTAATGGTAGCTCACTCTTAAAAAAAC  814

Query  698  ATCAGATAATCCATTTAGGAGACAAACAGTATAAATGTGATGTATGCGGCAAGGACTTTCATCAGAAGCGATAC  771
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  ATCAGATAATCCATTTAGGAGACAAACAGTATAAATGTGATGTATGCGGCAAGGACTTTCATCAGAAGCGATAC  888

Query  772  CTTGCATGCCATAGATGTCACACTGGTGAGAATCCTTACAAGTGTAATGAGTGTGGCAAGACATTCAGTCACAA  845
            ||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||
Sbjct  889  CTTGCATGCCATAGATGTCACACTGGTGAGAATCCTTACACGTGTAATGAGTGTGGCAAGACATTCAGTCACAA  962

Query  846  TTCAGCCCTGTTAGTTCACAAGGCAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTT  919
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TTCAGCCCTGTTAGTTCACAAGGCAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTT  1036

Query  920  TTAATCAACAATCAAACCTTGCACGTCATCATAGAGTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGT  993
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TTAATCAACAATCAAACCTTGCACGTCATCATAGAGTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGT  1110

Query  994  GACAAAGTTTTCAGTCGCAAATCACACCTTGAAAGACATAGGAGAATTCACACTGGAGAGAAACCATACAAATG  1067
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GACAAAGTTTTCAGTCGCAAATCACACCTTGAAAGACATAGGAGAATTCACACTGGAGAGAAACCATACAAATG  1184

Query 1068  TAAGGTTTGTGACAAGGCTTTCAGACGTGATTCACACCTGGCACAACATACTGTAATTCACACTGGAGAGAAAC  1141
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TAAGGTTTGTGACAAGGCTTTCAGACGTGATTCACACCTGGCACAACATACTGTAATTCACACTGGAGAGAAAC  1258

Query 1142  CTTACAAGTGTAATGAGTGTGGCAAGACCTTCGTTCAAAATTCATCTCTTGTAATGCATAAGGTCATTCATACT  1215
            |||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  CTTACAAGTGTAATGAGTGTGGCAAGACCTTTGTTCAAAATTCATCTCTTGTAATGCATAAGGTCATTCATACT  1332

Query 1216  GGAGAGAAACGTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCACAAATCAAACCTTGCATGTCATCGTAG  1289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  GGAGAGAAACGTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCACAAATCAAACCTTGCATGTCATCGTAG  1406

Query 1290  ACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCGAAAATCAAACCTTGAAC  1363
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  ACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCGAAAATCAAACCTTGAAC  1480

Query 1364  GTCATCATAGACTTCATACTGGAAAGAAATCT------------------------------------------  1395
            ||||||||||||||||||||||||||||||||                                          
Sbjct 1481  GTCATCATAGACTTCATACTGGAAAGAAATCTTAGAAGTGTAAATTTGCAAGGTTTTTAGGCAACAGTCAAACC  1554

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1555  TTGCATGTCATCATAGACTTTATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAAGTTTTCAATTT  1628

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1629  CAAATCACTCCTTGAAATACATAGGAGAGTTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGG  1702

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1703  ATTTCGGGTGTGATTCACACCTGGCCCAACATACTGGAATTCACACTGGAAAGGAACTGTACAAGTGTAATGAG  1776

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1777  TGTGGCAGAGCCTTTGGTGGTCAGTCAACACTTACTCACCATCAAGCAATCCATGGTATAGGGAAACTTGACTA  1850

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1851  ATGTAATGATTGTCACAAAGTCTTCAGTAATATTACAGCCATTGCAAAACATTGGAGAATCCATAATGAAGGAG  1924

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1925  GTCTTACAAGTGTAATAAATGTGGCAAGTTTTTCAGACATCATTCATAACTTGCAGTTCATTGGCGATCTTATA  1998

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1999  CAGGAGAGAAATCTTACAAATGTGATGATTGTGGCAAGGTCTTCAGTCAAGCTTCATCTTTTGCAAAACGGGAG  2072

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2073  AATTCATACAGGAGAGAAACCTCACAAGTGTGATGATTGTGAGCAAAGCCTTTACTTCACGTTCACACCACATT  2146

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2147  AGATATCAGAGGATCCATACTGGACAGAAATCTTACAAACGTCCTATGTGTGGCAAGGTCTTCAGTCCGAGGTT  2220

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2221  ACTCCTTGCAGAATATCATAACGTTCATTTTTGAGGTAATAGTTACAAATGCGGTGAGCACAGCAAACCATCAA  2294

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2295  GGATTGACAGTAGAGTCAATTCAGAATTGACTTGAGTTTGAGTTGACTTAAAACATTCAGTTGAAGCATTAATT  2368

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2369  GACATTAAAGTGTTTATGTTAAGAGGATTGGGCCAGGCGTGTGGCTCACGCCTGTAAATCCAGCACTTTAGGAG  2442

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2443  CCCAAGGTGGATAGATCACTTGAGGTCATGAGTTTGAGATCAGCCTGGCCAACAGACGATTGATTTCCAAAGAC  2516

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2517  TCATGCTATGTAAGGAAGCCACCAAGAAGGGCAAAGAAAAGGAGCCAGGGACGGCTCTTCCTCAGGGACACTAG  2590

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2591  ACTTTCAGGGATGTGGCTATAGATTTCTCTTTGGAGGAGTGGAAATGCCTGAACCCTGCACAGAGGGCTTTATA  2664

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2665  CAGGGAAGTGATGTTGGAGAACTACAGGAACCTGGAGTTTGTGGGCTTGAGTGCAAGCCACGATCTCGCCTCAC  2738

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2739  CACAACCTCCGTCTCCCGAGTTCAAGCGATTCTCCTGCCTCAGCTTCCCGAGTAGCTGGGATTACAGGTATGAA  2812

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2813  CCACTATGCCCGGCTAACTTTGTTTTTTTTTTTTAGAAATTAAACCTTTTTTCAGCTTAATGACCCAGGGGTGT  2886

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2887  ATTTTTGAAGGACTTGGGAGCTCTCTTTGAAAGGCAAACAACAAGGGAAACAGTACCTTTATCTCAGTAGGAAA  2960

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2961  TTAAATAATTCAAACATCAAATAACTTCAATTTAAGGCTATGGACTTTGAGATAATTCTGAGCCTTGAGAGGAA  3034

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3035  TGTGGTCAGGCAACCTGAGTCCAGTGGAATGCAGGTGCAACTTCTAAGAGTTTTCCTGTAAGTAATTAAGAAGA  3108

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3109  CTAAGTAGCCCCAGAGATAAGACCTCCTCGGATCATTGTCCCTTCTTATGTAGTGATAAAGTAACCTTCCTTGA  3182

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3183  AGTGTATCTATCCGTAATCAATCAAGTTGCTGCAGCCTATGCACTGGCCCAGAATAAAAAACGTGGTGATTCTG  3256

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3257  CTAAAGCTTCTCTGTCTTTCCCTGTGTGTGAAATCTTAACGTCTCTACTTGGGAACGCTGATCCCATTCATTTA  3330

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3331  GAGTTGATGTTTCCACGTGGCTATTTCCAAGCTTTGCCTTCAAATAAATTCTGTACTTAATCATATATTCTAAA  3404

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3405  TTTTATTATTTACTGCTGACATCAGTTTCTGTCGGATTGTAGGAGCCTCACCAGAGAGGGCCCCTGTCGCCATG  3478

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3479  TTGTAAAACTCACACTTGCCAAAAGTTGTGGGTTAGGGTTTCTCCCCCTCCCTCAGGATGACGCTAGTTAGCTG  3552

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3553  ACACAGATGGTCACCTCCATTACCAAGTAGAGTCAGGATGAACTATGTGTGACTGTTCAACTATGTGTCCTCTT  3626

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3627  CCCTGAGGACTGATTAGTGTTTATCTTGAAAACATGTCCTTAATGGGTTGTATAGAACACTGAAGCATCTGATT  3700

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3701  TCAAACTCTTAGCTCTTTTCCTCTATTTCCCATCACATTCTGGTCTAAGGCTTATTTATTAATAAAATGATTTT  3774

Query 1396  -----------  1395
                       
Sbjct 3775  TATTTCTTTAT  3785

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.