Nucleotide Global Alignment

Description

Query:
ccsbBroad304_08821
Subject:
XM_011541941.3
Aligned Length:
4017
Identities:
3657
Gaps:
354

Alignment

Query    1  ATGACAGGCGAGGTGGGTTCTGAGGTTCACCTAGAAATCAATGACCCAAACGTCATTTCACAAGAGGAAGCAGA  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGACAGGCGAGGTGGGTTCTGAGGTTCACCTAGAAATCAATGACCCAAACGTCATTTCACAAGAGGAAGCAGA  74

Query   75  TAGTCCTTCAGATAGTGGACAGGGCGGCTATGAAACAATTGGACCCTTGAGTGAAGGAGATTCAGATGAAGAGA  148
            |||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  TAGTCCTTCAGATAGTGGACAGGGCAGCTATGAAACAATTGGACCCTTGAGTGAAGGAGATTCAGATGAAGAGA  148

Query  149  TATTTGTAAGTAAGAAGTTGAAAAACAGGAAGGTTCTACAAGACAGTGATTCCGAAACAGAGGACACAAATGCC  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  TATTTGTAAGTAAGAAGTTGAAAAACAGGAAGGTTCTACAAGACAGTGATTCCGAAACAGAGGACACAAATGCC  222

Query  223  TCTCCAGAGAAAACTACCTATGACAGTGCCGAGGAGGAAAATAAAGAGAATTTATATGCTGGGAAAAATACAAA  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TCTCCAGAGAAAACTACCTATGACAGTGCCGAGGAGGAAAATAAAGAGAATTTATATGCTGGGAAAAATACAAA  296

Query  297  AATCAAAAGGATTTACAAAACTGTGGCAGACAGTGATGAAAGTTACATGGAAAAGTCTTTGTATCAGGAAAATC  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  AATCAAAAGGATTTACAAAACTGTGGCAGACAGTGATGAAAGTTACATGGAAAAGTCTTTGTATCAGGAAAATC  370

Query  371  TTGAAGCGCAAGTGAAACCTTGCTTAGAGCTGAGTCTTCAGTCTGGAAACTCTACAGACTTTACCACTGACAGA  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TTGAAGCGCAAGTGAAACCTTGCTTAGAGCTGAGTCTTCAGTCTGGAAACTCTACAGACTTTACCACTGACAGA  444

Query  445  AAGAGTTCCAAAAAGCACATACATGATAAAGAAGGAACTGCAGGAAAAGCAAAAGTAAAATCAAAAAGAAGACT  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  AAGAGTTCCAAAAAGCACATACATGATAAAGAAGGAACTGCAGGAAAAGCAAAAGTAAAATCAAAAAGAAGACT  518

Query  519  TGAGAAAGAGGAGAGAAAAATGGAAAAAATTAGACAGCTAAAAAAGAAGGAAACAAAAAACCAGGAAGATGATG  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
Sbjct  519  TGAGAAAGAGGAGAGAAAAATGGAAAAAATTAGACAGCTAAAAAAGAAGGAAACAAAAAACC------------  580

Query  593  TAGAACAGCCATTTAATGACAGTGGCTGTCTTCTTGTGGATAAAGACCTTTTTGAAACTGGGTTGGAGGATGAA  666
                                                                                      
Sbjct  581  --------------------------------------------------------------------------  580

Query  667  AATAACTCTCCATTGGAAGATGAAGAGTCATTAGAATCAATAAGAGCAGCTGTAAAAAACAAAGTAAAAAAGCA  740
                                                                                      
Sbjct  581  --------------------------------------------------------------------------  580

Query  741  CAAGAAAAAAGAACCATCTTTGGAGAGTGGGGTCCATTCATTTGAGGAAGGAAGTGAGTTATCAAAAGGAACCA  814
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  581  --AGAAAAAAGAACCATCTTTGGAGAGTGGGGTCCATTCATTTGAGGAAGGAAGTGAGTTATCAAAAGGAACCA  652

Query  815  CGAGGAAGGAAAGAAAGGCAGCCAGATTAAGTAAAGAAGCATTAAAACAACTGCATAGTGAGACTCAGCGCCTT  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  653  CGAGGAAGGAAAGAAAGGCAGCCAGATTAAGTAAAGAAGCATTAAAACAACTGCATAGTGAGACTCAGCGCCTT  726

Query  889  ATTCGAGAGTCTGCACTGAACCTTCCATATCATATGCCTGAGAATAAAACCATTCATGATTTCTTCAAACGTAA  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  727  ATTCGAGAGTCTGCACTGAACCTTCCATATCATATGCCTGAGAATAAAACCATTCATGATTTCTTCAAACGTAA  800

Query  963  ACCCCGGCCCACTTGCCACGGAAATGCCATGGCACTATTGAAGTCATCTAAATATCAGTCAAGCCATCACAAAG  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  801  ACCCCGGCCCACTTGCCACGGAAATGCCATGGCACTATTGAAGTCATCTAAATATCAGTCAAGCCATCACAAAG  874

Query 1037  AAATCATAGACACTGCAAATACTACTGAAATGAACAGTGATCACCATAGTAAAGGTTCTGAGCAGACAACAGGT  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  875  AAATCATAGACACTGCAAATACTACTGAAATGAACAGTGATCACCATAGTAAAGGTTCTGAGCAGACAACAGGT  948

Query 1111  GCAGAAAATGAAGTGGAAACTAATGCACTCCCTGTAGTTTCAAAGGAAACCCAGATCATTACTGGATCAGATGA  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  949  GCAGAAAATGAAGTGGAAACTAATGCACTCCCTGTAGTTTCAAAGGAAACCCAGATCATTACTGGATCAGATGA  1022

Query 1185  GTCTTGCAGGAAGGATTTGGTAAAAAATGAAGAGCTAGAAATTCAGGAGAAACAGAAGCAGAGTGACATTAGAC  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023  GTCTTGCAGGAAGGATTTGGTAAAAAATGAAGAGCTAGAAATTCAGGAGAAACAGAAGCAGAGTGACATTAGAC  1096

Query 1259  CTTCACCTGGGGACAGCTCAGTGTTGCAACAGGAATCCAACTTCCTCGGGAACAATCACAGTGAGGAATGTCAG  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1097  CTTCACCTGGGGACAGCTCAGTGTTGCAACAGGAATCCAACTTCCTCGGGAACAATCACAGTGAGGAATGTCAG  1170

Query 1333  GTTGAAGGGCTTGTAGCATTTGAACCTCATGCCCTGGAGGGTGAAGGCCCCCAAAATCCAGAAGAAACAGATGA  1406
            ||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1171  GTTGGAGGGCTTGTAGCATTTGAACCTCATGCCCTGGAGGGTGAAGGCCCCCAAAATCCAGAAGAAACAGATGA  1244

Query 1407  GAAAGTGGAAGAGCCTGAGCAGCAAAATAAATCATCAGCAGTTGGGCCACCTGAAAAAGTGAGACGGTTTACTC  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245  GAAAGTGGAAGAGCCTGAGCAGCAAAATAAATCATCAGCAGTTGGGCCACCTGAAAAAGTGAGACGGTTTACTC  1318

Query 1481  TGGATAGACTTAAGCAACTGGGAGTAGATGTTTCCATTAAACCACGGCTAGGTGCTGATGAAGATTCCTTTGTG  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319  TGGATAGACTTAAGCAACTGGGAGTAGATGTTTCCATTAAACCACGGCTAGGTGCTGATGAAGATTCCTTTGTG  1392

Query 1555  ATACTTGAACCTGAAACCAACAG---------------------------------------------------  1577
            |||||||||||||||||||||||                                                   
Sbjct 1393  ATACTTGAACCTGAAACCAACAGAGAACTGGAAGCCTTGAAGCAGCGTTTCTGGAAGCATGCTAATCCAGCAGC  1466

Query 1578  --------------------------------------------------------------------------  1577
                                                                                      
Sbjct 1467  CAAACCCAGGGCTGGTCAGACAGTGAATGTGAACGTCATAGTGAAAGACATGGGCACTGATGGAAAGGAAGAGC  1540

Query 1578  -------------------------------------------------------------------AGGTGAA  1584
                                                                               |||||||
Sbjct 1541  TAAAAGCAGATGTGGTACCTGTGACTTTAGCACCTAAGAAGTTGGATGGAGCAAGCCACACAAAACCAGGTGAA  1614

Query 1585  AAGCTTCAGGTGTTAAAAGCTAAACTGCAAGAAGCAATGAAACTCCGAAGGTTTGAGGAGCGCCAGAAGCGCCA  1658
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615  AAGCTTCAGGTGTTAAAAGCTAAACTGCAAGAAGCAATGAAACTCCGAAGGTTTGAGGAGCGCCAGAAGCGCCA  1688

Query 1659  AGCACTGTTTAAATTAGATAATGAAGATGGGTTTGAGGAAGAGGAGGAGGAAGAGGAAGAAATGACAGATGAGT  1732
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1689  AGCACTGTTTAAATTAGATAATGAAGATGGGTTTGAGGAAGAGGAGGAGGAAGAGGAAGAAATGACAGATGAGT  1762

Query 1733  CTGAGGAAGATGGAGAAGAGAAGGTAGAGAAAGAAGAGAAAGAGGAAGAACTAGAGGAAGAGGAGGAGAAAGAA  1806
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1763  CTGAGGAAGATGGAGAAGAGAAGGTAGAGAAAGAAGAGAAAGAGGAAGAACTAGAGGAAGAGGAGGAGAAAGAA  1836

Query 1807  GAGGAGGAGGAAGAAGAAGGAAATCAGGAGACTGCAGAATTCCTTCTTAGTAGTGAAGAAATAGAAACAAAAGA  1880
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1837  GAGGAGGAGGAAGAAGAAGGAAATCAGGAGACTGCAGAATTCCTTCTTAGTAGTGAAGAAATAGAAACAAAAGA  1910

Query 1881  TGAAAAAGAAATGGATAAAGAAAATAATGATGGCAGTAGTGAAATTGGCAAGGCAGTTGGCTTCCTCTCTGTTC  1954
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1911  TGAAAAAGAAATGGATAAAGAAAATAATGATGGCAGTAGTGAAATTGGCAAGGCAGTTGGCTTCCTCTCTGTTC  1984

Query 1955  CCAAGTCTCTCTCATCAGATTCTACTTTACTTCTGTTTAAGGACAGCTCTTCCAAGATGGGTTACTTTCCTACT  2028
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1985  CCAAGTCTCTCTCATCAGATTCTACTTTACTTCTGTTTAAGGACAGCTCTTCCAAGATGGGTTACTTTCCTACT  2058

Query 2029  GAAGAAAAATCAGAAACAGATGAAAACTCAGGCAAGCAGCCTAGCAAACTGGATGAGGATGATTCATGTTCATT  2102
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2059  GAAGAAAAATCAGAAACAGATGAAAACTCAGGCAAGCAGCCTAGCAAACTGGATGAGGATGATTCATGTTCATT  2132

Query 2103  GCTAACAAAGGAGAGCAGCCACAATAGCAGCTTTGAGCTGATTGGCTCCACGATTCCATCCTATCAGCCTTGCA  2176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2133  GCTAACAAAGGAGAGCAGCCACAATAGCAGCTTTGAGCTGATTGGCTCCACGATTCCATCCTATCAGCCTTGCA  2206

Query 2177  ACAGACAAACAGGCCGTGGGACCAGTTTTTTCCCTACAGCAGGAGGATTCAGATCTCCTTCCCCTGGGCTATTT  2250
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2207  ACAGACAAACAGGCCGTGGGACCAGTTTTTTCCCTACAGCAGGAGGATTCAGATCTCCTTCCCCTGGGCTATTT  2280

Query 2251  CGAGCCAGTTTGGTCAGCTCAGCTTCTAAGAGTTCAGGGAAACTGTCTGAGCCTTCACTTCCCATAGAGGATTC  2324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2281  CGAGCCAGTTTGGTCAGCTCAGCTTCTAAGAGTTCAGGGAAACTGTCTGAGCCTTCACTTCCCATAGAGGATTC  2354

Query 2325  CCAGGATCTGTATAACGCCTCCCCAGAGCCTAAGACACTTTTCCTAGGAGCAGGAGACTTCCAGTTCTGTTTAG  2398
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2355  CCAGGATCTGTATAACGCCTCCCCAGAGCCTAAGACACTTTTCCTAGGAGCAGGAGACTTCCAGTTCTGTTTAG  2428

Query 2399  AAGATGACACTCAGAGCCAACTGTTGGATGCAGATGGGTTCTTAAATGTTAGAAACCACAGGAATCAGTACCAA  2472
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2429  AAGATGACACTCAGAGCCAACTGTTGGATGCAGATGGGTTCTTAAATGTTAGAAACCACAGGAATCAGTACCAA  2502

Query 2473  GCTTTGAAGCCTCGATTGCCATTGGCCAGTATGGATGAGAATGCCATGGATGCCAACATGGATGAGCTGTTGGA  2546
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2503  GCTTTGAAGCCTCGATTGCCATTGGCCAGTATGGATGAGAATGCCATGGATGCCAACATGGATGAGCTGTTGGA  2576

Query 2547  TTTGTGTACTGGAAAGTTCACATCTCAGGCTGAAAAACATCTACCCAGGAAGGGTGACGAGAAAGAGAACATGG  2620
            ||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.|||||||||||||||
Sbjct 2577  TTTGTGTACTGGAAAGTTCACATCTCAGGCTGAAAAACATCTACCCAGGAAGAGTGACAAGAAAGAGAACATGG  2650

Query 2621  AGGAACTTCTGAACCTTTGTTCAGGAAAATTCACTTCTCAGGATGCCTCCACTCCAGCCTCATCAGAGTTAAAT  2694
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2651  AGGAACTTCTGAACCTTTGTTCAGGAAAATTCACTTCTCAGGATGCCTCCACTCCAGCCTCATCAGAGTTAAAT  2724

Query 2695  AAACAGGAGAAGGAGAGCAGCATGGGTGATCCAATGGAAGAAGCACTTGCTCTTTGCTCAGGCTCTTTTCCCAC  2768
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2725  AAACAGGAGAAGGAGAGCAGCATGGGTGATCCAATGGAAGAAGCACTTGCTCTTTGCTCAGGCTCTTTTCCCAC  2798

Query 2769  AGACAAGGAAGAGGAAGACGAGGAGGAGGAATTTGGAGACTTTCGGCTTGTTTCAAATGATAATGAGTTTGATA  2842
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2799  AGACAAGGAAGAGGAAGACGAGGAGGAGGAATTTGGAGACTTTCGGCTTGTTTCAAATGATAATGAGTTTGATA  2872

Query 2843  GTGATGAGGATGAACACAGTGACTCTGGTAATGATCTGGCACTGGAAGACCATGAAGATGATGATGAAGAAGAA  2916
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2873  GTGATGAGGATGAACACAGTGACTCTGGTAATGATCTGGCACTGGAAGACCATGAAGATGATGATGAAGAAGAA  2946

Query 2917  CTCCTGAAGCGATCTGAGAAGTTGAAAAGGCAAATGAGGTTGAGGAAATACCTGGAGGATGAGGCAGAGGTGTC  2990
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2947  CTCCTGAAGCGATCTGAGAAGTTGAAAAGGCAAATGAGGTTGAGGAAATACCTGGAGGATGAGGCAGAGGTGTC  3020

Query 2991  AGGAAGTGATGTGGGAAGCGAAGATGAGTATGATGGGGAAGAAATTGATGAATATGAAGAGGACGTAATTGATG  3064
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3021  AGGAAGTGATGTGGGAAGCGAAGATGAGTATGATGGGGAAGAAATTGATGAATATGAAGAGGACGTAATTGATG  3094

Query 3065  AAGTACTTCCTTCTGATGAGGAACTGCAGAGTCAAATCAAGAAAATACACATGAAAACTATGTTGGATGATGAT  3138
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3095  AAGTACTTCCTTCTGATGAGGAACTGCAGAGTCAAATCAAGAAAATACACATGAAAACTATGTTGGATGATGAT  3168

Query 3139  AAGCGACAGCTACGTTTATACCAAGAGAGGTACCTTGCTGATGGGGATCTACACAGCGATGGTCCTGGGCGAAT  3212
            ||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct 3169  AAGCGACAGCTACGTTTATACCAAGAGAGGTACCTTGCTGATGGGGATCTGCACAGCGATGGTCCTGGGCGAAT  3242

Query 3213  GAGGAAGTTTCGATGGAAAAACATAGATGATGCTTCCCAGATGGACTTGTTCCACAGAGACTCTGATGATGATC  3286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3243  GAGGAAGTTTCGATGGAAAAACATAGATGATGCTTCCCAGATGGACTTGTTCCACAGAGACTCTGATGATGATC  3316

Query 3287  AGACTGAAGAACAGCTTGATGAGTCAGAAGCCAGGTGGAGGAAGGAGCGAATTGAACGAGAGCAGTGGCTTCGG  3360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3317  AGACTGAAGAACAGCTTGATGAGTCAGAAGCCAGGTGGAGGAAGGAGCGAATTGAACGAGAGCAGTGGCTTCGG  3390

Query 3361  GACATGGCACAGCAGGGGAAAATTACAGCTGAAGAAGAAGAAGAAATTGGGGAGGACAGTCAGTTTATGATACT  3434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3391  GACATGGCACAGCAGGGGAAAATTACAGCTGAAGAAGAAGAAGAAATTGGGGAGGACAGTCAGTTTATGATACT  3464

Query 3435  GGCCAAGAAAGTTACAGCCAAAGCACTGCAGAAGAATGCCAGTCGCCCTATGGTTATTCAGGAATCAAAGTCTT  3508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3465  GGCCAAGAAAGTTACAGCCAAAGCACTGCAGAAGAATGCCAGTCGCCCTATGGTTATTCAGGAATCAAAGTCTT  3538

Query 3509  TGCTCAGAAATCCTTTTGAAGCCATCAGACCAGGAAGTGCTCAACAGGTGAAGACAGGCTCACTGCTAAACCAG  3582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3539  TGCTCAGAAATCCTTTTGAAGCCATCAGACCAGGAAGTGCTCAACAGGTGAAGACAGGCTCACTGCTAAACCAG  3612

Query 3583  CCCAAAGCTGTGCTTCAGAAACTGGCTGCTCTCTCTGACCATAACCCCAGTGCTCCTCGAAATTCGAGAAACTT  3656
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct 3613  CCCAAAGCTGTGCTTCAGAAACTGGCTGCTCTCTCTGACCATAACCCCAGTGCTCCTCGAAATTCAAGAAACTT  3686

Query 3657  TGTCTTTCATACACTTTCTCCTGTCAAGGCTGAGGCGGCAAAGGAATCGTCTAAGTCTCAGGTAAAGAAAAGGG  3730
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3687  TGTCTTTCATACACTTTCTCCTGTCAAGGCTGAGGCGGCAAAGGAATCGTCTAAGTCTCAGGTAAAGAAAAGGG  3760

Query 3731  GTCCATCTTTCATGACTTCTCCTTCACCTAAGCACCTCAAAACAGATGATAGCACTTCAGGATTGACGCGAAGC  3804
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3761  GTCCATCTTTCATGACTTCTCCTTCACCTAAGCACCTCAAAACAGATGATAGCACTTCAGGATTGACGCGAAGC  3834

Query 3805  ATCTTCAAATATTTGGAGAGC  3825
            |||||||||||||||||||||
Sbjct 3835  ATCTTCAAATATTTGGAGAGC  3855

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