Nucleotide Global Alignment

Description

Query:
ccsbBroad304_08879
Subject:
XM_017012546.2
Aligned Length:
2394
Identities:
1561
Gaps:
828

Alignment

Query    1  ATGGCGGCTCTGGCCTACAACCTGGGCAAGCGGGAGATCAACCACTACTTCAGCGTGAGGAGCGCCAAGGTGCT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GGCGCTGGTGGCCGTGCTGCTGCTCGCAGCGTGCCACCTCGCCTCCCGCCGCTACCGAGGCAATGATTCGTGTG  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  AATACCTTCTCTCAAGTGGCAGATTTCTTGGAGAGAAAGTTTGGCAACCTCACAGTTGTATGATGCATAAATAC  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  AAAATCAGTGAAGCAAAGAACTGCCTTGTAGATAAACATATTGCATTTATTGGAGATTCCAGAATTCGTCAATT  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  GTTTTATTCTTTTGTAAAAATAATTAATCCCCAATTCAAAGAAGAAGGAAATAAGCATGAAAACATTCCTTTTG  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  AAGACAAGACTGCATCAGTTAAAGTGGATTTTCTGTGGCATCCTGAAGTTAATGGTTCTATGAAACAGTGTATC  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  AAAGTGTGGACTGAGGATTCCATTGCAAAGCCACATGTGATTGTAGCAGGAGCTGCCACATGGTCCATCAAGAT  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  TCACAATGGTAGCAGTGAAGCGCTTTCTCAATATAAAATGAACATCACCTCCATAGCACCACTTTTAGAAAAAT  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  TGGCAAAGACTAGTGATGTTTATTGGGTCTTACAAGATCCTGTTTATGAAGATCTATTAAGTGAAAATAGGAAG  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  ATGATCACTAATGAGAAGATAGATGCTTACAATGAAGCTGCAGTCAGTATTTTGAATAGTAGCACCAGAAATTC  740
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  741  TAAATCAAATGTTAAGATGTTCAGTGTTTCCAAATTAATTGCTCAAGAAACCATCATGGAATCTTTGGAT---G  811
                                                                        ||.|||  ||   |
Sbjct    1  ------------------------------------------------------------ATGTTT--ATTGGG  12

Query  812  GCTTACATCTTCCTGAATCGAGCAGAGAAACTACTGCAATGATTCTTATGAATGTGTATTGCAATAAGATTTTG  885
            .||||||             ||          ||||||||||||||||||||||||||||||||||||||||||
Sbjct   13  TCTTACA-------------AG----------ACTGCAATGATTCTTATGAATGTGTATTGCAATAAGATTTTG  63

Query  886  AAGCCTGTAGATGGGTCCTGTTGTCAACCTCGGCCTCCTGTTACTCTCATACAGAAGCTAGCTGCTTGTTTTTT  959
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   64  AAGCCTGTAGATGGGTCCTGTTGTCAACCTCGGCCTCCTGTTACTCTCATACAGAAGCTAGCTGCTTGTTTTTT  137

Query  960  CACTTTATCTATTATCGGATATTTAATTTTTTACATAATTCATCGTAATGCTCATCGGAAGAATAAGCCGTGTA  1033
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  138  CACTTTATCTATTATCGGATATTTAATTTTTTACATAATTCATCGTAATGCTCATCGGAAGAATAAGCCGTGTA  211

Query 1034  CTGATTTGGAAAGTGGAGAGGAAAAGAAAAATATTATCAATACCCCTGTGTCTTCATTAGAAATACTTTTACAA  1107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  212  CTGATTTGGAAAGTGGAGAGGAAAAGAAAAATATTATCAATACCCCTGTGTCTTCATTAGAAATACTTTTACAA  285

Query 1108  TCTTTCTGCAAACTTGGCCTGATTATGGCATATTTCTATATGTGTGACAGTGCAAATCTGTTCATGAAGGAAAA  1181
            ||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||
Sbjct  286  TCTTTCTGCAAACTTGGCCTGATTATGGCATATTTCTATATGTGTGACCGTGCAAATCTGTTCATGAAGGAAAA  359

Query 1182  CAAATTTTATACACATTCATCTTTCTTTATTCCAATTATCTACATTTTGGTTTTGGGAGTATTTTATAATGAAA  1255
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  360  CAAATTTTATACACATTCATCTTTCTTTATTCCAATTATCTACATTTTGGTTTTGGGAGTATTTTATAATGAAA  433

Query 1256  ATACTAAAGAGACTAAAGTATTAAATAGAGAACAAACAGACGAATGGAAAGGCTGGATGCAACTTGTGATTTTG  1329
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  434  ATACTAAAGAGACTAAAGTATTAAATAGAGAACAAACAGACGAATGGAAAGGCTGGATGCAACTTGTGATTTTG  507

Query 1330  ATTTATCACATTTCTGGAGCAAGTACATTTTTGCCTGTATACATGCACATTCGAGTTCTGGTTGCTGCATATTT  1403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  508  ATTTATCACATTTCTGGAGCAAGTACATTTTTGCCTGTATACATGCACATTCGAGTTCTGGTTGCTGCATATTT  581

Query 1404  ATTTCAGACAGGGTATGGGCATTTCTCATACTTTTGGATAAAAGGAGATTTTGGAATCTACAGAGTATGTCAGG  1477
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct  582  ATTTCAGACAGGGTATGGGCATTTCTCATACTTTTGGATAAAAGGAGATTTTGGAATCTATAGAGTATGTCAGG  655

Query 1478  TTTTATTTCGTCTCAATTTCCTGGTAGTGGTGTTATGTATAGTAATGGATCGACCTTATCAATTCTATTACTTT  1551
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  656  TTTTATTTCGTCTCAATTTCCTGGTAGTGGTGTTATGTATAGTAATGGATCGACCTTATCAATTCTATTACTTT  729

Query 1552  GTCCCCTTGGTCACTGTATGGTTCATGGTCATATATGTTACTTTAGCACTATGGCCACAAATAATCCAAAAAAA  1625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  730  GTCCCCTTGGTCACTGTATGGTTCATGGTCATATATGTTACTTTAGCACTATGGCCACAAATAATCCAAAAAAA  803

Query 1626  AGCAAACGGAAATTGTTTCTGGCATTTTGGCTTACTGTTGAAACTAGGCTTTTTGCTGTTATTCATATGTTTTT  1699
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  804  AGCAAACGGAAATTGTTTCTGGCATTTTGGCTTACTGTTGAAACTAGGCTTTTTGCTGTTATTCATATGTTTTT  877

Query 1700  TGGCATATTCTCAGGGTGCATTTGAGAAGATCTTTTCTCTTTGGCCATTGTCCAAGTGTTTTGAACTGAAAGGG  1773
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  878  TGGCATATTCTCAGGGTGCATTTGAGAAGATCTTTTCTCTTTGGCCATTGTCCAAGTGTTTTGAACTGAAAGGG  951

Query 1774  AATGTATATGAATGGTGGTTCAGATGGAGGTTAGACCGTTATGTAGTTTTCCACGGAATGCTGTTTGCTTTTAT  1847
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  952  AATGTATATGAATGGTGGTTCAGATGGAGGTTAGACCGTTATGTAGTTTTCCACGGAATGCTGTTTGCTTTTAT  1025

Query 1848  TTATCTGGCCTTGCAGAAGCGTCAAATACTTTCTGAAGGAAAGGGTGAACCTCTTTTTTCAAACAAAATTTCAA  1921
            |||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026  TTATCTGGCTTTGCAGAAGCGTCAAATACTTTCTGAAGGAAAGGGTGAACCTCTTTTTTCAAACAAAATTTCAA  1099

Query 1922  ATTTTCTGTTGTTTATTTCAGTAGTTTCTTTCTTGACCTATTCCATCTGGGCTAGCAGTTGTAAAAACAAAGCA  1995
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100  ATTTTCTGTTGTTTATTTCAGTAGTTTCTTTCTTGACCTATTCCATCTGGGCTAGCAGTTGTAAAAACAAAGCA  1173

Query 1996  GAGTGCAATGAACTCCATCCGTCTGTTTCTGTGGTACAGATTTTAGCCTTCATCCTAATAAGAAACATCCCTGG  2069
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174  GAGTGCAATGAACTCCATCCGTCTGTTTCTGTGGTACAGATTTTAGCCTTCATCCTAATAAGAAACATCCCTGG  1247

Query 2070  ATATGCCCGTTCAGTTTACAGTTCATTTTTTGCTTGGTTTGGAAAAATTTCATTAGAGCTATTTATTTGCCAGT  2143
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248  ATATGCCCGTTCAGTTTACAGTTCATTTTTTGCTTGGTTTGGAAAAATTTCATTAGAGCTATTTATTTGCCAGT  1321

Query 2144  ATCACATATGGCTGGCAGCGGACACAAGGGGTATCTTGGTACTGATACCTGGAAACCCTATGCTCAACATCATT  2217
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322  ATCACATATGGCTGGCAGCGGACACAAGGGGTATCTTGGTACTGATACCTGGAAACCCTATGCTCAACATCATT  1395

Query 2218  GTCAGCACTTTCATATTTGTTTGTGTGGCACATGAAATTTCTCAGATCACTAATGATCTTGCACAGATTATTAT  2291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1396  GTCAGCACTTTCATATTTGTTTGTGTGGCACATGAAATTTCTCAGATCACTAATGATCTTGCACAGATTATTAT  1469

Query 2292  TCCTAAAGATAACTCATCTCTCTTGAAAAGGTTGGCATGTATAGCTGCATTTTTTTGTGGACTCCTCATCTTAT  2365
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1470  TCCTAAAGATAACTCATCTCTCTTGAAAAGGTTGGCATGTATAGCTGCATTTTTTTGTGGACTCCTCATCTTAT  1543

Query 2366  CATCCATTCAAGATAAATCAAAACAT  2391
            ||||||||||||||||||||||||||
Sbjct 1544  CATCCATTCAAGATAAATCAAAACAT  1569

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.