Nucleotide Global Alignment

Description

Query:
ccsbBroad304_08908
Subject:
NM_001083956.1
Aligned Length:
1578
Identities:
1472
Gaps:
105

Alignment

Query    1  ATGGAGGAAATACCAGCCCAGGAAGCAGCAGGGTCACCAAGGGTCCAGTTTCAGTCTTTGGAGACCCAGTCTGA  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGAGGAAATACCAGCCCAGGAAGCAGCAGGGTCACCAAGGGTCCAGTTTCAGTCTTTGGAGACCCAGTCTGA  74

Query   75  GTGTCTGTCCCCAGAGCCTCAGTTTGTGCAGGACACCGACATGGAACAGGGACTCACTGGG-------------  135
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
Sbjct   75  GTGTCTGTCCCCAGAGCCTCAGTTTGTGCAGGACACCGACATGGAACAGGGACTCACTGGGGGATTTCCAATTT  148

Query  136  --------------------------------------------------------------------------  135
                                                                                      
Sbjct  149  CCAAGCCTGATGGGATCTCCCAGCTGGAACAGGATCTACAGGTCTTTGATCTGGAAACTAAGACTAGAGAAGTC  222

Query  136  ------------------GATGGAGAGACCAGAGAAGATAACAAGCTGTTGATTCCTAAGCAGAAAATTTCGGA  191
                              ||||||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct  223  TTAAGAGATGACTGCTCAGATGGAGAGACCAGAGAAGAGAACAAGCTGTTGATTCCTAAGCAGAAAATTTCGGA  296

Query  192  AGAAGTGCATTCATACAAAGTGAGAGTAGGAAGACTCAAACACGATATTACCCAAGTTCCTGAGACTAGAGAAG  265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  AGAAGTGCATTCATACAAAGTGAGAGTAGGAAGACTCAAACACGATATTACCCAAGTTCCTGAGACTAGAGAAG  370

Query  266  TGTATAAGTCTGAGGACAGATTAGAAAGACTTCAGGAAATTCTAAGGAAATTTCTGTACCTGGAGAGAGAGTTT  339
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TGTATAAGTCTGAGGACAGATTAGAAAGACTTCAGGAAATTCTAAGGAAATTTCTGTACCTGGAGAGAGAGTTT  444

Query  340  AGGCAAATAACAATCAGCAAGGAAACCTTCACCAGTGAGAAGAACAATGAATGTCATGAACCCGAAAAAAGCTT  413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  AGGCAAATAACAATCAGCAAGGAAACCTTCACCAGTGAGAAGAACAATGAATGTCATGAACCCGAAAAAAGCTT  518

Query  414  CAGTCTGGACTCTACTATTGATGCAGATCAGAGAGTTCTTAGAATACAGAATACCGATGACAATGATAAGTATG  487
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CAGTCTGGACTCTACTATTGATGCAGATCAGAGAGTTCTTAGAATACAGAATACCGATGACAATGATAAGTATG  592

Query  488  ACATGAGCTTCAACCAGAATTCAGCCTCTGGTAAACATGAACACTTAAATCTAACAGAGGATTTTCAGAGTAGT  561
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  ACATGAGCTTCAACCAGAATTCAGCCTCTGGTAAACATGAACACTTAAATCTAACAGAGGATTTTCAGAGTAGT  666

Query  562  GAATGTAAGGAAAGCTTAATGGATCTCTCCCACCTTAATAAATGGGAGAGCATCCCTAACACTGAGAAATCCTA  635
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GAATGTAAGGAAAGCTTAATGGATCTCTCCCACCTTAATAAATGGGAGAGCATCCCTAACACTGAGAAATCCTA  740

Query  636  TAAATGTGATGTATGTGGGAAAATTTTCCATCAGAGCTCAGCCCTTACTAGACATCAGAGAATCCATACTAGAG  709
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TAAATGTGATGTATGTGGGAAAATTTTCCATCAGAGCTCAGCCCTTACTAGACATCAGAGAATCCATACTAGAG  814

Query  710  AGAAGCCCTACAAATGTAAAGAATGTGAAAAGTCTTTCAGTCAGAGCTCAAGTCTTAGTCGACATAAAAGAATA  783
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  AGAAGCCCTACAAATGTAAAGAATGTGAAAAGTCTTTCAGTCAGAGCTCAAGTCTTAGTCGACATAAAAGAATA  888

Query  784  CACACTAGAGAAAAACCTTACAAATGTGAAGCATCTGATAAATCCTGTGAAGCGTCTGATAAATCCTGTAGTCC  857
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CACACTAGAGAAAAACCTTACAAATGTGAAGCATCTGATAAATCCTGTGAAGCGTCTGATAAATCCTGTAGTCC  962

Query  858  AAGCTCAGGCATAATTCAGCATAAGAAAATTCACACCAGAGCCAAATCTTACAAATGTAGCAGTTGTGAAAGAG  931
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  AAGCTCAGGCATAATTCAGCATAAGAAAATTCACACCAGAGCCAAATCTTACAAATGTAGCAGTTGTGAAAGAG  1036

Query  932  TCTTCAGTCGTAGTGTCCACCTTACTCAACATCAGAAAATTCACAAAGAGATGCCCTGTAAGTGTACTGTATGT  1005
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TCTTCAGTCGTAGTGTCCACCTTACTCAACATCAGAAAATTCACAAAGAGATGCCCTGTAAGTGTACTGTATGT  1110

Query 1006  GGCAGTGACTTCTGCCATACTTCATACCTACTTGAACATCAGAGGGTCCATCATGAAGAGAAAGCCTATGAGTA  1079
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GGCAGTGACTTCTGCCATACTTCATACCTACTTGAACATCAGAGGGTCCATCATGAAGAGAAAGCCTATGAGTA  1184

Query 1080  TGATGAATATGGGTTGGCCTATATTAAACAACAAGGAATTCATTTCAGAGAAAAGCCCTATACGTGTAGTGAAT  1153
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TGATGAATATGGGTTGGCCTATATTAAACAACAAGGAATTCATTTCAGAGAAAAGCCCTATACGTGTAGTGAAT  1258

Query 1154  GTGGAAAAGACTTCAGATTGAATTCACATCTTATTCAGCATCAAAGAATTCACACAGGAGAGAAAGCACATGAA  1227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  GTGGAAAAGACTTCAGATTGAATTCACATCTTATTCAGCATCAAAGAATTCACACAGGAGAGAAAGCACATGAA  1332

Query 1228  TGTAATGAATGTGGAAAAGCTTTCAGTCAAACCTCATGCCTTATTCAGCATCACAAAATGCATAGGAAAGAGAA  1301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  TGTAATGAATGTGGAAAAGCTTTCAGTCAAACCTCATGCCTTATTCAGCATCACAAAATGCATAGGAAAGAGAA  1406

Query 1302  ATCGTATGAATGTAATGAGTATGAGGGCAGTTTCAGTCATAGCTCAGATCTTATCCTGCAACAAGAAGTCCTCA  1375
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  ATCGTATGAATGTAATGAGTATGAGGGCAGTTTCAGTCATAGCTCAGATCTTATCCTGCAACAAGAAGTCCTCA  1480

Query 1376  CCAGACAGAAAGCCTTTGATTGTGATGTATGGGAAAAGAACTCCAGTCAGAGAGCACATCTAGTTCAACATCAG  1449
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  CCAGACAGAAAGCCTTTGATTGTGATGTATGGGAAAAGAACTCCAGTCAGAGAGCACATCTAGTTCAACATCAG  1554

Query 1450  AGCATTCATACCAAAGAGAACTCA  1473
            ||||||||||||||||||||||||
Sbjct 1555  AGCATTCATACCAAAGAGAACTCA  1578

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