Nucleotide Global Alignment

Description

Query:
ccsbBroad304_09195
Subject:
XR_374505.2
Aligned Length:
2866
Identities:
1241
Gaps:
1436

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCGTGGCTTCCTTAAGCAGAAGCGCGTCATAGACGCGCCAAAAAAGAACTTCAAGCGAGGTCCGAGTTTGCCTT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTGGGCTTGTGCTCGGCCTTCCCCGCCCTGCGTCTGGCGTTCTGGCGCGCAGTGACGCGGGCACCGGGCGGCTC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CGGAGACGGAGTGTCCGCGGAGCCCTGCGTGAGAGTGTATACGGCTTACGGCTCTGTCGCAGGCTCCGGGGCTC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CTGAAAGCAGGACGCGAGGAAGACGGGGAGTCAGGGATTGCGTACGACTTTTCTCAGGCTGCTTCCCTATGTAG  296

Query    1  ------------------------------------------------ATGAATGGAGAGTATAGAGGCAGAGG  26
                                                            ||||.|||.|..||||||||||||||
Sbjct  297  ATGTTGGAATCGCCACCGTTCTCAGAGTGCTCTTGACTTGTGGAAGACATGAGTGGTGCTTATAGAGGCAGAGG  370

Query   27  ATTTGGACGAGGAAGATTTCAAAGCTGGAAAAGGGGAAGAGGTGGTGGGAACTTCTCAGGAAAATGGAGAGAAA  100
            .|||||||||||||||||.||||||||||||||.||||||||||||||||||||||||||||..||||||||||
Sbjct  371  TTTTGGACGAGGAAGATTCCAAAGCTGGAAAAGAGGAAGAGGTGGTGGGAACTTCTCAGGAAGGTGGAGAGAAA  444

Query  101  GAGAACACAGACCTGATCTGAGTAAAACCACAGGAAA--ACGTACTTCTGAACAAACCCCACAGTTTTTGCTTT  172
            |||||.|||||..|||.||||.|.||.|..|||||||  |||  ||||||.||||.||.||||....||.| ||
Sbjct  445  GAGAAAACAGAGTTGACCTGAATGAAGCTTCAGGAAAGCACG--CTTCTGCACAAGCCTCACAACCGTTAC-TT  515

Query  173  CAACAAAGACCCCACAGTCAATGCAGTCAACATTGGATCGATTCATACCATATAAAGGCTGGAAGCTTTATTTC  246
            |||                    ||||||||||||||||..||.||.||.|||||.||||||||||||||.|||
Sbjct  516  CAA--------------------CAGTCAACATTGGATCAGTTTATCCCGTATAAGGGCTGGAAGCTTTACTTC  569

Query  247  TCTGAAGTTTACAGCGATAGCTCTCCTTTGATTGAGAAGATTCAAGCATTTGAAAAATTTTTCACAAGGCATAT  320
            ||||||||||||||..|||.||||||.||.|||||||||||||||||||||||.||||||||||||||||||||
Sbjct  570  TCTGAAGTTTACAGTAATAACTCTCCCTTTATTGAGAAGATTCAAGCATTTGAGAAATTTTTCACAAGGCATAT  643

Query  321  TGATTTGTATGACAAGGATGAAATAGAAAGAAAGGGAAGTATTTTGGTAGATTTTAAAGAACTGACAGAAGGTG  394
            .||.||.||.||.||||||||||||||||||||.|||||.||||||||.||||||||||||||||||.|||.||
Sbjct  644  CGACTTATACGATAAGGATGAAATAGAAAGAAAAGGAAGCATTTTGGTGGATTTTAAAGAACTGACAAAAGCTG  717

Query  395  GTGAAGTAACTAACTTGATACCAGATATAGCAACTGAACTAAGAGATGCACCTGAGAAAACCTTGGCTTGCATG  468
            .||||.||||||||||||||||.|||||||.||..|.||||||||||||.|||||||||||..||||.||.|||
Sbjct  718  ATGAAATAACTAACTTGATACCCGATATAGAAAACGCACTAAGAGATGCCCCTGAGAAAACACTGGCGTGTATG  791

Query  469  GGTTTGGCAATACATCAGGTGTTAACTAAGGACCTTGAAAGGCATGCAGCTGAGTTACAAGCCCAGGAAGGATT  542
            ||..||||||||||||||||.||||||||||||||||||||||||||.||.||.||||||||.||.||.|||||
Sbjct  792  GGGCTGGCAATACATCAGGTATTAACTAAGGACCTTGAAAGGCATGCCGCCGAATTACAAGCTCAAGAGGGATT  865

Query  543  GTCTAATGATGGAGAAACAATGGTAAATGTGCCACATATTCATGCAAGGGTGTACAACTATGAGCCTTTGACAC  616
            ||||||.|.||||||.||||||||||||||.|||||||||.|||||||.|||||||||||||||||.|||||||
Sbjct  866  GTCTAACGGTGGAGAGACAATGGTAAATGTACCACATATTTATGCAAGAGTGTACAACTATGAGCCCTTGACAC  939

Query  617  AGCTCAAGAATGTCAGAGCAAATTACTATGGAAAATACATTGCTCTAAGAGGGACAGTGGTTCGTGTCAGTAAT  690
            |.|||||||||.||.||||||.||.||||||.||||||||..||.||.|||||||.|||||.||.|||||.||.
Sbjct  940  ACCTCAAGAATATCCGAGCAACTTGCTATGGGAAATACATCTCTATACGAGGGACTGTGGTCCGGGTCAGCAAC  1013

Query  691  ATAAAGCCTCTTTGCACCAAGATGGCTTTTCTTTGTGCTGCATGTGGAGAAATTCAGAGCTTTCCTCTTCCAGA  764
            ||||||||||||||||||||.||||||||||..||.||||||||||||||.|||||||||||||||||.|||||
Sbjct 1014  ATAAAGCCTCTTTGCACCAACATGGCTTTTCAGTGCGCTGCATGTGGAGAGATTCAGAGCTTTCCTCTGCCAGA  1087

Query  765  TGGAAAATACAGTCTTCCCACAAAGTGTCCTGTGCCTGTGTGTCGAGGCAGGTCATTTACTGCTCTCCGCAGCT  838
            |||||||||||..|||||.|||||||||||||||||||.|||.|||||.|||||||||.||.|.||.|||||||
Sbjct 1088  TGGAAAATACACCCTTCCTACAAAGTGTCCTGTGCCTGCGTGCCGAGGGAGGTCATTTGCTCCACTGCGCAGCT  1161

Query  839  CTCCTCTCACAGTTACGATGGACTGGCAGTCAATCAAAATCCAGGAATTGATGTCTGATGATCAGAGAGAAGCA  912
            ||||||||||||||||..||||||||||||..||||||||||||||..||||||||||||..|||||||||||.
Sbjct 1162  CTCCTCTCACAGTTACACTGGACTGGCAGTTGATCAAAATCCAGGAGCTGATGTCTGATGCACAGAGAGAAGCT  1235

Query  913  GGTCGGATTCCACGAACAATAGAATGTGAGCTTGTTCATGATCTTGTGGATAGCTGTGTCCCGGGAGACACAGT  986
            ||||||||.||.||.||.|||||||||||.||||||||.||||||||.|||||.||||||||.|||||.|||||
Sbjct 1236  GGTCGGATCCCTCGGACGATAGAATGTGAACTTGTTCACGATCTTGTAGATAGTTGTGTCCCAGGAGATACAGT  1309

Query  987  GACTATTACTGGAATTGTCAAAGTCTCAAATGCGGAAGAAGGTTCTCGAAATAAGAATGACAAGTGTATGTTCC  1060
            ||||.||||||||||||||||||||||.|||.|.||||||||||||||||||||||||||.|||||.|||||||
Sbjct 1310  GACTGTTACTGGAATTGTCAAAGTCTCCAATTCTGAAGAAGGTTCTCGAAATAAGAATGATAAGTGCATGTTCC  1383

Query 1061  TTTTGTATATTGAAGCAAATTCTATTAGTAATAGCAAAGGACAGAAAACAAAGAGTTCTGAGGATGGGTGTAAG  1134
            |||||||.|||||.|||||||||.||||.||.|||||.||.|.||||.||.|||.|.|.||.|||||.||.|||
Sbjct 1384  TTTTGTACATTGAGGCAAATTCTGTTAGCAACAGCAAGGGGCCGAAAGCACAGACTGCAGAAGATGGTTGCAAG  1457

Query 1135  CATGGAATGTTGATGGAGTTCTCACTTAAAGACCTTTATGCCATCCAAGAGATTCAAGCTGAAGAAAACCTGTT  1208
            |||||.|...|||||||||||||.|||||||||||.||||||||||.||||||.||.||||||||.||||||.|
Sbjct 1458  CATGGGACACTGATGGAGTTCTCCCTTAAAGACCTCTATGCCATCCGAGAGATCCAGGCTGAAGAGAACCTGCT  1531

Query 1209  TAAACTCATTGTCAACTCGCTTTGCCCTGTCATTTTTGGTCATGAACTTGTTAAAGCAGGTTTGGCATTAGCAC  1282
            .||.|||.|||||||                                                           
Sbjct 1532  CAAGCTCGTTGTCAA-----------------------------------------------------------  1546

Query 1283  TCTTTGGAGGAAGCCAGAAATACGCAGATGACAAAAACAGAATTCCAATTCGGGGAGACCCCCACATCCTTGTT  1356
                                                                                      
Sbjct 1547  --------------------------------------------------------------------------  1546

Query 1357  GTTGGAGATCCAGGCTTAGGAAAAAGTCAAATGCTACAGGCAGCGTGCAATGTTGCCCCACGTGGCGTGTATGT  1430
                                                   |||||.|||||.||.||.||||||||.||||||||
Sbjct 1547  ---------------------------------------GCAGCATGCAACGTGGCGCCACGTGGTGTGTATGT  1581

Query 1431  TTGTGGTAACACCACGACCACCTCTGGTCTGACGGTAACTCTTTCAAAAGATAGTTCCTCTGGAGATTTTGCTT  1504
            ||||||.||.|||||.||||.|||||||||.||.||.|||||||||||.||.||||||||||||||||||||||
Sbjct 1582  TTGTGGAAATACCACCACCAGCTCTGGTCTCACTGTGACTCTTTCAAAGGACAGTTCCTCTGGAGATTTTGCTT  1655

Query 1505  TGGAAGCTGGTGCCCTGGTACTTGGTGATCAAGGTATTTGTGGAATCGATGAATTTGATAAGATGGGGAATCAA  1578
            ||||||||||||||||.|||||||||||.|||||.||.||||||||.||||||||||||||.||||||||.|||
Sbjct 1656  TGGAAGCTGGTGCCCTTGTACTTGGTGACCAAGGCATCTGTGGAATAGATGAATTTGATAAAATGGGGAACCAA  1729

Query 1579  CATCAAGCCTTGTTGGAAGCCATGGAGCAGCAAAGTATTAGTCTTGCTAAGGCTGGTGTGGTTTGTAGCCTTCC  1652
            |||||||||.||||.|||||||||||.|||||.||||||||.|||||                           
Sbjct 1730  CATCAAGCCCTGTTAGAAGCCATGGAACAGCAGAGTATTAGCCTTGC---------------------------  1776

Query 1653  TGCAAGAACTTCCATTATTGCTGCTGCAAATCCAGTTGGAGGACATTACAATAAAGCCAAAACAGTTTCTGAGA  1726
                                                                                      
Sbjct 1777  --------------------------------------------------------------------------  1776

Query 1727  ATTTAAAAATGGGGAGTGCACTACTATCCAGATTTGATTTGGTCTTTATCCTGTTAGATACTCCAAATGAGCAT  1800
                                                                                      
Sbjct 1777  --------------------------------------------------------------------------  1776

Query 1801  CATGATCACTTACTCTCTGAACATGTGATTGCAATAAGAGCTGGAAAGCAGAGAACCATTAGCAGTGCCACAGT  1874
                                                                                      
Sbjct 1777  --------------------------------------------------------------------------  1776

Query 1875  AGCTCGTATGAATAGTCAAGATTCAAATACTTCCGTACTTGAAGTAGTTTCTGAGAAGCCATTATCAGAAAGAC  1948
                                                                                      
Sbjct 1777  --------------------------------------------------------------------------  1776

Query 1949  TAAAGGTGGTTCCTGGAGAAACAATAGATCCCATTCCCCACCAGCTATTGAGAAAGTACATTGGCTATGCTCGG  2022
                                                                                      
Sbjct 1777  --------------------------------------------------------------------------  1776

Query 2023  CAGTATGTGTACCCAAGGCTATCCACAGAAGCTGCTCGAGTTCTTCAAGATTTTTACCTTGAGCTCCGGAAACA  2096
                                                                                      
Sbjct 1777  --------------------------------------------------------------------------  1776

Query 2097  GAGCCAGAGGTTAAATAGCTCACCAATCACTACCAGGCAGCTGGAATCTTTGATTCGTCTGACAGAGGCACGAG  2170
                                                                                      
Sbjct 1777  --------------------------------------------------------------------------  1776

Query 2171  CAAGGTTGGAATTGAGAGAGGAAGCAACCAAAGAAGACGCTGAGGATATAGTGGAAATTATGAAATATAGCATG  2244
                                                                                      
Sbjct 1777  --------------------------------------------------------------------------  1776

Query 2245  CTAGGAACTTACTCTGATGAATTTGGGAACCTAGATTTTGAGCGATCCCAGCATGGTTCTGGAATGAGCAACAG  2318
                                                                                      
Sbjct 1777  --------------------------------------------------------------------------  1776

Query 2319  GTCAACAGCGAAAAGATTTATTTCTGCTCTCAACAACGTTGCTGAAAGAACTTATAATAATATATTTCAATTTC  2392
                                                                                      
Sbjct 1777  --------------------------------------------------------------------------  1776

Query 2393  ATCAACTTCGGCAGATTGCCAAAGAACTAAACATTCAGGTTGCTGATTTTGAAAATTTTATTGGATCACTAAAT  2466
                                                                                      
Sbjct 1777  --------------------------------------------------------------------------  1776

Query 2467  GACCAGGGTTACCTCTTGAAAAAAGGCCCAAAAGTTTACCAGCTTCAAACTATG  2520
                                                                  
Sbjct 1777  ------------------------------------------------------  1776

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