Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_09365
- Subject:
- NR_033181.2
- Aligned Length:
- 6153
- Identities:
- 1017
- Gaps:
- 5135
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTTCCTCCGACTTCCGGACATCTCCCTGGGAGTCGCGCAGAGTGGAGTCAAAGGCAACCAGTGCTCGCTGCGGT 74
Query 1 ---------------------------------------ATGTTCCGGGGCTTGAGCAGTTGGTTGGGCTTGCA 35
|||||||||||||||||||||||||||||||||||
Sbjct 75 CTCTGGGGATCGGGACCGCGGCGGCGGCCCGCGAGCGGGATGTTCCGGGGCTTGAGCAGTTGGTTGGGCTTGCA 148
Query 36 GCAGCCGGTGGCAGGCGGTGGGCAGCCCAATGGAGATGCTCTACCCGAGCAGCCGTCCGAGACGGTGGCTGAGT 109
|||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||
Sbjct 149 GCAGCCGGTGGCAGGCGGTGGGCAGCCCAATGGAGATGCTCCACCCGAGCAGCCGTCCGAGACGGTGGCTGAGT 222
Query 110 CTGCGGAGGAGGAGCTGCAGCAAGCGGGAGACCAGGAGCTCCTCCACCAGGCCAAAGACTTCGGCAACTATTTA 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CTGCGGAGGAGGAGCTGCAGCAAGCGGGAGACCAGGAGCTCCTCCACCAGGCCAAAGACTTCGGCA-------- 288
Query 184 TTTAACTTTGCATCTGCTGCCACAAAAAAGATAACTGAATCAGTTGCTGAAACAGCACAAACAATAAAGAAATC 257
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 ------------------------------ATAACTGAATCAGTTGCTGAAACAGCACAAACAATAAAGAAATC 332
Query 258 CGTAGAAGAAGGAAAAATAGATGGCATCATTGACAAGACAATTATAGGAGATTTTCAGAAGGAACAGAAAAAAT 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 CGTAGAAGAAGGAAAAATAGATGGCATCATTGACAAGACAATTATAGGAGATTTTCAGAAGGAACAGAAAAAAT 406
Query 332 TTGTTGAAGAGCAACATACAAAGAAGTCAGAAGCAGCTGTGCCCCCATGGGTTGACACTAACGATGAAGAAACA 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 TTGTTGAAGAGCAACATACAAAGAAGTCAGAAGCAGCTGTGCCCCCATGGGTTGACACTAACGATGAAGAAACA 480
Query 406 ATTCAACAACAAATTTTGGCCTTATCAGCTGACAAGAGGAATTTCCTTCGTGACCCTCCGGCTGGCGTGCAATT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATTCAACAACAAATTTTGGCCTTATCAGCTGACAAGAGGAATTTCCTTCGTGACCCTCCGGCTGGCGTGCAATT 554
Query 480 TAATTTCGACTTTGATCAGATGTACCCCGTGGCCCTGGTCATGCTCCAGGAGGATGAGCTGCTAAGCAAGATGA 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 TAATTTCGACTTTGATCAGATGTACCCCGTGGCCCTGGTCATGCTCCAGGAGGATGAGCTGCTAAGCAAGATGA 628
Query 554 GATTTGCCCTCGTTCCTAAACTTGTGAAGGAAGAAGTGTTCTGGAGGAACTACTTTTACCGCGTCTCCCTGATT 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 GATTTGCCCTCGTTCCTAAACTTGTGAAGGAAGAAGTGTTCTGGAGGAACTACTTTTACCGCGTCTCCCTGATT 702
Query 628 AAGCAGTCAGCCCAGCTCACGGCCCTGGCTGCCCAACAGCAGGCCGCAGGGAAGGAGGAGAAGAGCAATGGCAG 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 AAGCAGTCAGCCCAGCTCACGGCCCTGGCTGCCCAACAGCAGGCCGCAGGGAAGGAGGAGAAGAGCAATGGCAG 776
Query 702 AGAGCAAGATTTGCCGCTGGCAGAGGCAGTACGGCCCAAAACGCCACCCGTTGTAATCAAATCTCAGCTTAAAA 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 AGAGCAAGATTTGCCGCTGGCAGAGGCAGTACGGCCCAAAACGCCACCCGTTGTAATCAAATCTCAGCTTAAAA 850
Query 776 CTCAAGAGGATGAGGAAGAAATTTCTACTAGCCCAGGTGTTTCTGAGTTTGTCAGTGATGCCTTCGATGCCTGT 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 CTCAAGAGGATGAGGAAGAAATTTCTACTAGCCCAGGTGTTTCTGAGTTTGTCAGTGATGCCTTCGATGCCTGT 924
Query 850 AACCTAAATCAGGAAGATCTAAGGAAAGAAATGGAGCAACTAGTGCTTGACAAAAAGCAAGAGGAGACAGCCGT 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 AACCTAAATCAGGAAGATCTAAGGAAAGAAATGGAGCAACTAGTGCTTGACAAAAAGCAAGAGGAGACAGCCGT 998
Query 924 ACTGGAAGAGGATTCTGCAGATTGGGAAAAAGAACTGCAGCAGGAACTTCAAGAATATGAAGTGGTGACAGAAT 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 ACTGGAAGAGGATTCTGCAGATTGGGAAAAAGAACTGCAGCAGGAACTTCAAGAATATGAAGTGGTGACAGAAT 1072
Query 998 CTGAAAAACGAGATGAAAACTGGGATAAGGAAATAGAGAAAATGCTTCAAGAGGAAAAT--------------- 1056
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 CTGAAAAACGAGATGAAAACTGGGATAAGGAAATAGAGAAAATGCTTCAAGAGGAAAATTAGCTGTTCCTGAAA 1146
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 1147 TAGAAGAATAATCCTTAACAGTCTGCAAACTGACATTAAATTCTAGATGTTGACAATTACTGAATCAGAAGGCA 1220
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 1221 TGAAAGAGTATAATTTTATGAAATTCAAAATTATTCTTTTTTCAAGTTGAAACTTGCCTCTTCTACTTTAAAAA 1294
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 1295 AGTATATAGAACAGTTACTTCTAATAATCAGAAAGAGATGTTTTATAGAACATTTCTTTAATATAAAGTTAGAG 1368
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 1369 ATGTCTTCATAGGCAGTATGGCTATCTTTGCCACAGAAACATAAGTAAAATTTTAGAGTTCTGTTTTCCATGAG 1442
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 1443 GTCAAAAATATAATTTATTCCTCAGTCATGGTTTTCTAAATATCTGTACTCCACATTCCATTTTAATTGATATG 1516
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 1517 AGGGTGTTAAAGTACCTACTTAATGGGTTGATTACTATCAAAATGACCAAATTATACCAAAGAACTTAAGAGGA 1590
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 1591 AGCACTTTCAGAACTATTCACTTGCCAGGTATTTTCTAAAATTCCACCTGAAAGCCAAAAGATAAAATAAATAA 1664
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 1665 GTTGATTTTAATGATATAAGCATCACACAATTTTACATTAAGAAATACTGTGCAGGCCATGCGTGGTGGCTCAG 1738
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 1739 GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCACCGGAGGTCAGGAGTTCGAGACCAGCCTTGC 1812
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 1813 CAACATAGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCAGGCACCTGTAATCCCA 1886
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 1887 GCTACTAGGGAGGCTTTTGAACCCAGGAGGCAGAGGTTGCAGCGAGCTGAGATCGCGCCACTGCACTCCAGCCT 1960
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 1961 GGGTGATAGAGTGAGATTCAGTCTCAAAAAAAAAAAAAAAAAAAAGCTGTGCGAAAATATTTGTTTTTCTCTGG 2034
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 2035 GGCCTTTTCTTTCTTTTCTTTTTAAACTATACCAGAAATTTTACATCACAGTTTTTATACAAAGTGGGACCTTC 2108
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 2109 CATACTTTTTGTATTACAATAACCTTCAGAAGCCCATTCCCCTTAAAGTCTGTTGTTCTTGTTTTAATCATCAC 2182
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 2183 CACATATAAATGTTTTAGCTTTGTCTTAAACTGTGAGTCTTCATAAAATTGTGTTCCTCCGAGTTCACCTTCTA 2256
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 2257 GGACTTTATTGATTAATCCTTCTCTTTCTGCTATACCAGCAGACACATATTCATAGAATATGATTATTTTTAAA 2330
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 2331 GAACAAGGTGAGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGATGGAGGTTGCAGTGAGCTGAGATCAC 2404
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 2405 GCCACTGCACTCCAGCCTGGGTGACAGAGTGAGAGACTCCGTCTCAAAAATGAATGAATGAATGAATGAATGAA 2478
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 2479 TGAACGAACGAACAAGGTGGTTTAATGTCAGAAAACTTCCTAAGCATTTGCTCCCCAAACCTTTCATGTTTTTC 2552
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 2553 AAGAAGCCTTTATTACATAAAGGGGAATAGAATTAAAATGTTTCTTTATAAGAAAAATATACATATTTGTGTTC 2626
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 2627 TTGGCCCCATTAAAACTAGTCAGTAGTCCTTTGGCAAAGATATAGTCAACAAGAGAACTGGGTATGAGTCCAGG 2700
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 2701 CATTACTCCTGTTCATAGTTGTGGATGCATGTGTCTGAGCCAGACTGTCTCAACTGGAGTCTCTTGGGTTATAG 2774
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 2775 CAGTAAACCCGTGTATTCCATGAAACCACTGGGCCCATCATCAAAAGGTTTCCACTTGTGGTGCCACAGTTGCT 2848
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 2849 TATTACTGAGTTTGGGTTCCAAGATGACTGGCAACTTCTGAAATAATCTCATTGAAGGAAAGAGTTTCATTTTT 2922
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 2923 TTTTTAAAAGAGTTTGCTGGAGGAAAAGAAGCATGTTAAATGTTTTTAAGCAGCTAAAAGTCCTAGATGGAAGC 2996
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 2997 ATATCAGGATGTGTCGGTGCTTGGCTCTTAGTGAATGCACTAAAATTCTTATTGATAAATGTTGAATAAACACA 3070
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 3071 CACAAAAAAGTATCAGAGAAAGAGAAAAACCCTACAATGGCAATAGAGGTGTGTGACAGTTATTGCTATCAATT 3144
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 3145 TTACATAATATCTCATTTAAAAACAACCTAATTATGCATTGCCTGTGAAAATAAAAGGATAAAATAAGATTTTG 3218
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 3219 TACATACTGTAAGAATACAGTTGTGCTGTATTTTTATGGATTCATCAAGGAGTAAAATGTTCTGCTTTAGTAAA 3292
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 3293 TTATATAGGTAACTGAAGTGTTATTCCTTTAAAGAGCAAAATAATTTATCACCATGTTTGGTGGAAAATTTCTA 3366
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 3367 AGTATTTATTACATGCCTAGGGGTTAGCCAACAAGATATACCAAGCATGAAAACCTGTAAAACTTAATAAAATG 3440
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 3441 CTAAAATATGAACATCACACTATGGAGATTATGCCTCACTACTCAAAGAGTGTGGCTCAGGAACCAGTGTAGCT 3514
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 3515 TGGCCATGCCCTGGCAGTATGTTGGAAATGCCTGCCCCAGACCAGTTGATGTTACTAAGAACGCCCAGGGGATG 3588
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 3589 AGAATGGACTTTATTTACAGTTTGGGAAGCACTGGTCTAATATGCTCTCAGGGAAGCTGAGGTTTCTACTGCTT 3662
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 3663 TTTACTTTTTACCCTTCCACTAGATGTCCTTTGCAGCAGTGTTTTTCTAGTTGGCATTACAGGTGTCTCCTCTG 3736
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 3737 AGGTTCCAGTTATTTCTATACTACCAAAATTAAAAAGACCCAAGGGCTGGGCATGGTGGTTCACACCTGTAATC 3810
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 3811 CCAGCACTTTGGGAGGCTGAGGCAGGCAGATTGCTTGAGCTCAGGAGTTCAAGACCAGCCTGGGCAACATAGGG 3884
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 3885 AGACCCCTGCCTCTACAAAAATACAAATGAGCCAGGTGTGGTAGCCCACACCTGTGGTCCTAGCTACTTGGAAG 3958
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 3959 GCTGAGGCAGGAGGATCGCTTGAGCCCAGGAGATCCAGGCTGCAGTAAGCCATGATCATGCCACTGCACTTCAG 4032
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 4033 CCTGGGTGACAGAGACTCTGTTTCAAAAAAGGGAGGGGGGGCAAGTTTTTAGGGGGATGAGAAATATTCTTGGT 4106
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 4107 AAATCGGGCATTTCTTTTTTTGTTTGTTTTTTTTTCTTGGAGACAGAATCTTGCTCTGTCACCCAGGCTGGAGT 4180
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 4181 GCAGTGGCTTGATCTCAGCTCACGGCAACCTCCGCCTCCCAAGTTCAAGCGATTCTCCCACCTCAGCCTCCAGA 4254
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 4255 GTAGCTGGGATTACAGGCAACCGCCACCATGCCCAGCTAATTTTTTTGTATTTTTAGCAGAGATGGGGTTTCAC 4328
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 4329 CGTGTTGGCCAGGCTGGTCTCAAGCTCCTGATCTCAAATGATCCGCACGCCTTGACCTCCCAAAGTGTTGGGAT 4402
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 4403 TACAGGCATGAGCCACAGCCTTAATTGGTAATTTTTGAAAAAAAAACTAGAGAAACATTGTTTCAGAGATAAAG 4476
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 4477 CAGCAATTACACTTGTACTCCCAGTGATTTAAGATGCACTATTGTAATCAAGATGATTTGCTTTAATCAAAATA 4550
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 4551 TTGTTAAAAATAGGATTTCAGGACATTTAAAAGGTTTCAGCAGAAATCTTATGATTATGTCTGACTTGCAGTAT 4624
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 4625 TTTATTTGCCTCTTTGACGGCTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCACACTGTTGCCTGGGCTGG 4698
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 4699 AATGCAATGGCGCAGTCTCAGCTCACTGCAAACCTCCGGCTCCCGGGTTCAGGCAGTTCTCCTGCCTCAGCCTC 4772
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 4773 CCTAGTAGCTGGGATTATAGGCATGTGCCACCACACCCGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTC 4846
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 4847 GCCATGTTGGTCAGGCTGGTCTTGAACTCCCAACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGG 4920
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 4921 ATTACAGGCGTGAGCCACTGCGCCCAACCTTAATGGCTTTTTGGTATTAAAAACCAGGACTCTGAATGTGCATC 4994
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 4995 AATAATTCAAATAATTTTATATAGTTACTCTTTCTAGTAATAGATACCCCCCTCCATTTTTAAGTAAAGATAAA 5068
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 5069 CATTTTTTAATTAGGAAAATTAGGCACATTTAATTTTAGCAAATTTAGTTTTTCAACTTTTTTTTTTTTCTTTT 5142
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 5143 TTTTTTTTTTTGAGATGGAGGCTCACTCTGTTGCCCTGGCTGGAGTGCAGTGGCCGCAACCTCGGCTCACTGCA 5216
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 5217 ACCTCCGCCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGTGTGCCAC 5290
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 5291 CACACCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACGACT 5364
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 5365 GGCCTCAGGTGATCCGCCCACCTCGGCCTCTCAAAGTGCTGGGATTACAGGCATGAGCCACCATGCCCAGCCAG 5438
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 5439 TTTTTCAACTTTTAAAAATAAAAGTGGTAGAATTTTTTTTTTTCTTTTTGAGACAGGGTCTTGCTCTGTCACTC 5512
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 5513 AGGCTAGAGTGCAGTGGTGGGATCTCAGCTCACTGCAGCCTCCGCCTCCCAGGCTTAAGGGATCCTCCCTCCTC 5586
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 5587 AGCCTCCCGAGTAGCTGGGACCACAGGCATGCACCACCACGCCTGGCTAATTTTTGTATTTTTTGTAGAGATGG 5660
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 5661 GTGTCTCCCCATGTTGCTCAGGCTGTTCTTGAACTTCTGAGCTCAGGTGATCTATCTGCCTCGGCCTTCCAAAG 5734
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 5735 TGCTGGGATTACAGGCATGATGAGCCACTGCACCTGGCCAAAAGTGGCAGAAATTTTGATATGGTTTATAATCA 5808
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 5809 GTTTTATTGTGGGGAAGATGGGCCATTTTAATGAATGATTATTTCTATTGGCTAAACTACCGAGTCACGACATG 5882
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 5883 ACAAATACACATGAAGCTTTAATCACATGCAGTTATATACTTCTCACAAATCATCAAATTATTTATCTGGTCTT 5956
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 5957 CACACTAAGGGATTTACTTAGATAAGCCATCGATGATTTCAGTTGTTAAAAGTGTGGCTTTTTAAACAGCATTT 6030
Query 1057 -------------------------------------------------------------------------- 1056
Sbjct 6031 ATTCAGTGCATCCTGATTTATTTCAAAATGAAAAATTGTTACCTTTTTTTCTGAATAAATAAAGCTTACTTTTA 6104
Query 1057 ----------- 1056
Sbjct 6105 GTGGCAAGGTA 6115