Nucleotide Global Alignment

Description

Query:
ccsbBroad304_09689
Subject:
NM_003441.4
Aligned Length:
1966
Identities:
1244
Gaps:
566

Alignment

Query    1  ATGGAACTCGTAACATTCAGGGATGTGGCCATAGAATTCTCCCCTGAAGAGTGGAAATGTCTGGACCCTGCCCA  74
            |||||||||.|||||||||||||||||||||||||||||||.||.||||||||||||||.||||||||||.|||
Sbjct    1  ATGGAACTCTTAACATTCAGGGATGTGGCCATAGAATTCTCTCCAGAAGAGTGGAAATGCCTGGACCCTGACCA  74

Query   75  GCAGAATTTGTATAGAGATGTGATGTTGGAGAACTACAGGAACCTGGTCTCCCTGGGTTTTGTGATCTCTAACC  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||..||||||||||
Sbjct   75  GCAGAATTTGTATAGAGATGTGATGTTGGAGAACTACAGGAACCTGGTCTCCCTGGGTGTTGCTATCTCTAACC  148

Query  149  CAGACCTGGTCACCTGTCTGGAGCAAATAAAAGAGCCCTGCAATTTGAAGATACATGAGACAGCAGCCAAACCC  222
            |||||||||||||||||||||||||||.|||||||||||.||||.|||||||||||.|||..|.|||||.||||
Sbjct  149  CAGACCTGGTCACCTGTCTGGAGCAAAGAAAAGAGCCCTACAATGTGAAGATACATAAGATCGTAGCCAGACCC  222

Query  223  CCAGCTATATGTTCTCCTTTCAGCCAAGACCTTTCACCAGTGCAGGGGATAGAAGATTCATTCCACAAACTTAT  296
            ||||||||.|||||||.|||||.||||||||.||..|||||||||||.||||||||||||||||||||||||||
Sbjct  223  CCAGCTATGTGTTCTCATTTCACCCAAGACCATTGGCCAGTGCAGGGCATAGAAGATTCATTCCACAAACTTAT  296

Query  297  ACTGAAAAGATACGAGAAATGTGGACATGAGAATTTACAATTAAGAAAAGGTTGTAAACGTGTGAATGAGTGTA  370
            |||||.||||||.|||||||||||||||||.||||||||||||||||||||.||||||.||.||||||||||||
Sbjct  297  ACTGAGAAGATATGAGAAATGTGGACATGATAATTTACAATTAAGAAAAGGCTGTAAAAGTTTGAATGAGTGTA  370

Query  371  AGGTGCAGAAAGGAGTTAATAATGGAGTTTACCAGTGCTTGTCAACTACCCAGAGCAAAATATTTCAATGTAAT  444
            ||.||||||||||||.|.||||||.|.||.|..|.|||||||||||||||||||||||||||.||||.|||||.
Sbjct  371  AGTTGCAGAAAGGAGGTTATAATGAATTTAATGAATGCTTGTCAACTACCCAGAGCAAAATACTTCAGTGTAAA  444

Query  445  ACATGTGTTAAAGTTTTTAGTAAATTTTCAAATTCAAACAAACATAAGATAAGACATACTGGAGAGAAACCCTT  518
            .||.||||.||||||.|||||||||||||||||||||||||||.|||||.||||||||||||||||||||.|||
Sbjct  445  GCAAGTGTCAAAGTTGTTAGTAAATTTTCAAATTCAAACAAACGTAAGACAAGACATACTGGAGAGAAACACTT  518

Query  519  TAAATGTACAGAATGTGGCAGATCGTTTTACA---TGTCACACCTAACTCAACATACAGG-AATTCATGCTGGA  588
            |||      |||||||||||.|||.|||.|.|   |.||||||||||||||||||| ||| |||||||||||||
Sbjct  519  TAA------AGAATGTGGCAAATCATTTCAGAAGTTTTCACACCTAACTCAACATA-AGGTAATTCATGCTGGA  585

Query  589  GAGAAACCCTACAAATGTGAAAAATGTGGCAAAGCCTTTAATAGGTCCACATCACTTAGTAAACATAAGAGAAT  662
            |||||||||||||..||||||.|||||||||||||||||||..||||...|..|.|||.|.|||||||||||||
Sbjct  586  GAGAAACCCTACACTTGTGAAGAATGTGGCAAAGCCTTTAAATGGTCTTTAATATTTAATGAACATAAGAGAAT  659

Query  663  TCATACTGGAGAGAAACCCTACACATGTGAAGAATGTGGCAAAGC--CTTTAGACGGTCCACAGTTCTGA-AC-  732
            ||||||||||||||||||.|..||.|||||||||||||||  |||  |||||      ||||| |.||.| || 
Sbjct  660  TCATACTGGAGAGAAACCTTTTACTTGTGAAGAATGTGGC--AGCATCTTTA------CCACA-TCCTCACACT  724

Query  733  -----GAACATAAGAAAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTACAAGG  801
                 .|.|||||.|.|||||||||||||||.||||||||.||||||||||||||||||||||||||||..|||
Sbjct  725  TTGCTAAGCATAAAATAATTCATACTGGAGAAAAACCCTATAAATGTGAAGAATGTGGCAAAGCCTTTAATAGG  798

Query  802  TCCACAACACTGAATGAACACAAGAAAATTCATACTGGAGAGAAACCCTACAAATGTAAAGAATGTGGCAAAGC  875
            |.||||||.||.|.|.||||.||||.|||||||.||||||||||||||     ||                   
Sbjct  799  TTCACAACCCTTACTAAACATAAGAGAATTCATGCTGGAGAGAAACCC-----AT-------------------  848

Query  876  CTTTAGATGGTCCACAAGCATGAATGAACATAAGAATATTCATACTGGAGAGAAACCCTACAAATGTAAAGAAT  949
                                                                                      
Sbjct  849  --------------------------------------------------------------------------  848

Query  950  GTGGCAAAGCCTTTAGACAGTCCAGGAGCCTGAATGAACATAAAAATATTCATACTGGCGAAAAACCCTACACA  1023
                                                                                  ||||
Sbjct  849  ----------------------------------------------------------------------CACA  852

Query 1024  TGTGAAAAATGT-GGCAAAGCTTTTAACC-AATCCTCAAGTCTTATTATACACAGGAGCATTCATTCTGAACAA  1095
            ||||||.||||| ||.|||.||||  ||| .||||||                                     
Sbjct  853  TGTGAAGAATGTAGGAAAATCTTT--ACCTCATCCTC-------------------------------------  887

Query 1096  AAACTTTACAAATGTGAAGAATGTGGCAAAGCCTTTACTTGGTCCTCATCCCTTAATAAACATAAGAGAATTCA  1169
            |||||||                       |||                        |||||||||.|||||||
Sbjct  888  AAACTTT-----------------------GCC------------------------AAACATAAGCGAATTCA  914

Query 1170  TACTGGAGAGAAACCCTACGCATGTGAAGAATGTGGCAAAGCTTTTTATAGGTCCTCACACCTTGCTAAACATA  1243
            |||||||||||||||||||..|||||||||||||||||||||.|||.||||||||.||..||||.|||||||||
Sbjct  915  TACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAATAGGTCCACAACCCTTACTAAACATA  988

Query 1244  AGAGAATTCATACTGGAGAGAAACCCTACACGTGCGAAGAATGTGGCAAAGCTTTTAACCAATCCTCAACTCTT  1317
            |||||||||||||||||||||||||||||||                                           
Sbjct  989  AGAGAATTCATACTGGAGAGAAACCCTACAC-------------------------------------------  1019

Query 1318  ATATTACACAAGAGAATCCATTCTGGGCAAAAACCTTACAAATGTGAAGAATGTGGCAAAGCCTTTACACGGTC  1391
                                                     |||||||||||||||||||||.||||.||.|||
Sbjct 1020  -----------------------------------------ATGTGAAGAATGTGGCAAAGCTTTTAGACAGTC  1052

Query 1392  CACAACACTGAACGAACATAAGAAAATTCATACTGGCGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCTT  1465
            |.|||.||||||.||||||||||||.||||||||||.|||...||||||||||||||.||||||||||||||.|
Sbjct 1053  CTCAAAACTGAATGAACATAAGAAAGTTCATACTGGAGAGCGGCCCTACAAATGTGATGAATGTGGCAAAGCCT  1126

Query 1466  TCATATGGTCCGCAAG---CCTGAATGAACATAAGAATATTCATACTGGAGAGAAACCCTACAAATGTAAAGAA  1536
            |...|.|||||   ||   |||||||||||||||.||.|||||||||||||||||||||               
Sbjct 1127  TTGGACGGTCC---AGGGTCCTGAATGAACATAAAAAAATTCATACTGGAGAGAAACCC---------------  1182

Query 1537  TGTGGCAAAGCTTTTAACCAATCCTCAGGCCTTATTATACACAGGAGCATTCATTCTGAACAAAAACTTTACAA  1610
                                                                                 |||||
Sbjct 1183  ---------------------------------------------------------------------TACAA  1187

Query 1611  ATGTGAAGAATGTGGCAAAGCCTTTACTCGGTCCACAGCCCTGAATGAACATAAGAAAATTCATTCTGGAGAGA  1684
            ||||||||||||||||||||||||||..||||||||||..|.||.|.|||||||||||||||||..||.|||.|
Sbjct 1188  ATGTGAAGAATGTGGCAAAGCCTTTAGACGGTCCACAGATCGGAGTCAACATAAGAAAATTCATAGTGCAGATA  1261

Query 1685  AACCCTACAAATGCAAAGAATGTGGCAAAGCCTATA---ACTTATC-CTCAACCCTTACTAAACATAAGAGAAT  1754
            |||||||||||||.||||||||||.||||||||.||   |.||.|| ||    |||.|.|.|||||||||.|||
Sbjct 1262  AACCCTACAAATGTAAAGAATGTGACAAAGCCTTTAAACAATTTTCGCT----CCTGAGTCAACATAAGAAAAT  1331

Query 1755  TCATACTGGAGAGAAACCCTTCACATGTGAAGAATGTGGCAAAGCCTTCAATTGGTCCTCATCCCTTACTAAAC  1828
            ||||||||.|||.|||||||.||.||||.||||.||||.|||||||||.||..|||.||||..|||.|.|||||
Sbjct 1332  TCATACTGTAGATAAACCCTACAAATGTAAAGATTGTGACAAAGCCTTTAAACGGTTCTCACACCTGAATAAAC  1405

Query 1829  ATAAGATAATTCATACTGGAGAGAAATCCTACAAATGTGAAGAATGTGGCAAAGCTTTTAATCGGCCCTCAACC  1902
            ||||||.||||||||||                                                         
Sbjct 1406  ATAAGAAAATTCATACT---------------------------------------------------------  1422

Query 1903  CTTACTGTACACAAGCGAATTCATACTGGCAAGGAACATAGT  1944
                                                      
Sbjct 1423  ------------------------------------------  1422

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