Nucleotide Global Alignment

Description

Query:
ccsbBroad304_09825
Subject:
XR_001783141.1
Aligned Length:
2187
Identities:
955
Gaps:
1140

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCTTCCAATAGGAAGCCGGCGGGGTTGGGCCGCACGGGCATCCTCTCCAGCTGAGGCCACGGCCGGAGCCTGGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGGGGCGCGGGAGAGGCAGGTACCAGCGCGGTCTGCGCAGCCCCAGGCGCTAGAGCTGCGCTCTACGGTGGAAG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AACGGTTCCCGGGGGAGCCAGGGACCAAGGCGTCGGAGCGGGCGGAAATTGCGCCTGACCGGGCACGGTCCGAA  222

Query    1  ---------ATGGAAGAGGAGAAATATTTGCCTGAGCTGATGGCAGAGAAAGATAGCCTGGATCCATCTTTTGT  65
                     ||||.|||.||||||||.|||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct  223  GTCCGCGCTATGGGAGAAGAGAAATACTTGCCTGAGCTGATGGCAGAGAAGGATAGCCTGGATCCATCTTTTGT  296

Query   66  GCATGCGTCGCGCCTTTTGGCAGAAGAAATTGAAAAGTTTCAAGGTTCTGATGGAAAAAAGGAAGACGAAGAAA  139
            |||.||||||||||||.||||.|||||||||||.||.|||||||||||.|||||.|||||||||||.|||||||
Sbjct  297  GCACGCGTCGCGCCTTCTGGCGGAAGAAATTGAGAAATTTCAAGGTTCAGATGGGAAAAAGGAAGATGAAGAAA  370

Query  140  AGAAGTATCTTGATGTCATCAGCAACAAAAACATAAAGCTCTCAGAAAGAGTACTGATTCCTGTCAAGCAGTAT  213
            ||||.|||||.||||||||||||||||||||||||||||||||.|||||||||.||||||||||.||.||||||
Sbjct  371  AGAAATATCTCGATGTCATCAGCAACAAAAACATAAAGCTCTCTGAAAGAGTATTGATTCCTGTGAAACAGTAT  444

Query  214  CCAAAGTTCAATTTTGTGGGGAAATTGCTTGGACCAAGAGGAAACTCCTTGAAGAGGCTACAGGAAGAAACAGG  287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||.||
Sbjct  445  CCAAAGTTCAATTTTGTGGGGAAATTGCTTGGACCAAGAGGAAACTCCTTGAAGAGGCTACAAGAAGAAACGGG  518

Query  288  TGCTAAAATGTCTATCCTGGGCAAAGGATCAATGAGAGATAAAGCTAAGGAAGAAGAACTAAGGAAGAGTGGGG  361
            |||||||||||||||||||||||||||.||.|||.|||||||..|.|||||||||||.||.|||||||||||||
Sbjct  519  TGCTAAAATGTCTATCCTGGGCAAAGGGTCCATGCGAGATAAGACAAAGGAAGAAGAGCTGAGGAAGAGTGGGG  592

Query  362  AAGCCAAATATGCCCACTTGAGTGATGAGCTTCATGTATTAATTGAAGTGTTTGCTCCACCTGGGGAAGCTTAT  435
            |.|||||.|||||||||.|||||||||||||.|||||||||||||||||||||||||||||.||||||||||||
Sbjct  593  AGGCCAAGTATGCCCACCTGAGTGATGAGCTGCATGTATTAATTGAAGTGTTTGCTCCACCCGGGGAAGCTTAT  666

Query  436  TCACGTATGAGTCATGCATTGGAAGAGATTAAAAAATTCCTGGTTCCTGACTACAATGATGAAATTCGTCAGGA  509
            |||||.|||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct  667  TCACGGATGAGTCATGCCTTGGAAGAGATTAAAAAATTCCTGGTTCCTGACTACAATGATGAAATTCGTCAAGA  740

Query  510  ACAACTACGTGAATTATCTTACTTAAATGGCTCAGAGGACTCTGGTCGTGGCAGAGGTATTAGAGGCAGAGGGA  583
            .|||||.||.||.||.||||||||.|||||||||||.||.|||||.||.|||.|||||||||||||||||||||
Sbjct  741  GCAACTCCGGGAGTTGTCTTACTTGAATGGCTCAGAAGAGTCTGGCCGGGGCCGAGGTATTAGAGGCAGAGGGA  814

Query  584  TCAGAATAGCTCCCACAGCTCCTTCAAGGGGCCGTGGGGGTGCCATTCCTCCTCCCCCACCACCTGGACGAGGT  657
            ||||||||.|||||||||||||.||||||||||||||.|||||..||||.||.||.||||||||||||||||||
Sbjct  815  TCAGAATAACTCCCACAGCTCCATCAAGGGGCCGTGGCGGTGCTGTTCCACCACCACCACCACCTGGACGAGGT  888

Query  658  GTTCTCACCCCTCGGGGAAGCACTGTAACCCGTGGAGCGCTTCCAGTGCCACCTGTAGCAAGAGGTGTCCCTAC  731
            ||.||.|||||||||||.|.||||||.|||||||||||.|||||||||||.||..||||||||||||||||.||
Sbjct  889  GTGCTTACCCCTCGGGGGACCACTGTGACCCGTGGAGCTCTTCCAGTGCCCCCAATAGCAAGAGGTGTCCCCAC  962

Query  732  CCCTCGAGCCCGGGGGGCACCAACAGTGCCAGGATACAGGGCACCTCCTCCTCCAGCCCATGAAGCTTATGAAG  805
            .|||||||||||||||.|..||.||||.|||||||||||.|||||.||.||||||||.|||||.||||||||||
Sbjct  963  ACCTCGAGCCCGGGGGACGGCAGCAGTACCAGGATACAGAGCACCCCCACCTCCAGCTCATGATGCTTATGAAG  1036

Query  806  AATATGGTTATGATGATGGCTACGGGGGTGAATATGATGACCAGACCTATGAGACTTATGATAACAGCTACGCG  879
            |||||||.||||||||||||||.||||||||||||||||||||||||||||||.||||||||||.|||||||.|
Sbjct 1037  AATATGGGTATGATGATGGCTATGGGGGTGAATATGATGACCAGACCTATGAGGCTTATGATAATAGCTACGTG  1110

Query  880  ACCCAAACACAAAGTGTGCCTGAATACTATGACTACGGTCATGGAGTAAGTGAGGATGCCTATGACAGCTACGC  953
            ||||.||||||||||||||||||||||||||||||||||||||||||||..|||||||||||.|||||||||||
Sbjct 1111  ACCCCAACACAAAGTGTGCCTGAATACTATGACTACGGTCATGGAGTAAACGAGGATGCCTACGACAGCTACGC  1184

Query  954  ACCAGAAGAATGGGCCACAACCAGCTCTAGCTTGAAGGCACCACCGCAAAGGTCAGCCAGAGGGGGATACAGGG  1027
            |||||||||||||||||||||..||||.|||.|||||||||||||.|.||||||||||||||||||||||||||
Sbjct 1185  ACCAGAAGAATGGGCCACAACTCGCTCCAGCCTGAAGGCACCACCACCAAGGTCAGCCAGAGGGGGATACAGGG  1258

Query 1028  AACACCCCTATGGTAGATAT------------------------------------------------------  1047
            |.||||||||||||||||||                                                      
Sbjct 1259  AGCACCCCTATGGTAGATATTGAAGGTCCTCTTCATCTGTGACCTCCTCAAAGACAATTCATAGCCTGTGGTCT  1332

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 1333  CCACATAAACAGCAACAAGACAAGTCCGCACAATGAGCACATATATGGTAGCAGATATGATGGCCTAAAGGGGG  1406

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 1407  ATACAGTTGATGGCCATTTTGGTATCCCCATGTCTTGACTACTGGGAATAGAGATACAGTGAACATAGGAATAC  1480

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 1481  AGACTAAAGGAGTTATTTTGGCCTACAGCTGAAAAGGATGGCATCATAATAGAAATGAGAGTTGGATGGATTAT  1554

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 1555  CAGATATAGAGAAAAAGTCATCATATTAGATAATAAGTGGGAATCCCAGATGTCTGTCAATCAGATCCATACCT  1628

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 1629  CCAAGACAAAGAAAATAAAAATCAAAATGCACAGAGAACAATACTGATTTTCATTATTGAAATATTCAAATGGT  1702

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 1703  GACTGGGTTGTCAAATTCATCAAAGAAATTATATATTGACTGTGACACAGCTTTATTGAGACTGCTGAAAGTCC  1776

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 1777  CCAGGGAATAGAAGATAAAATCCCCTGCAGCTTGAACTACCGGATTAGAAGGAAATTTCTAAATGAAACTTGCT  1850

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 1851  AATGAAGACAACACACTGCTGAGGAAATAATGGGAAATTCAGTGTCGGCGGCTGATACAACTAACTTGAAATAA  1924

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 1925  AGCATTTTTGGAGTAGAGAATAGTGAAAAGGTGGCAAATCCCCAAATCTGTAAGGGAAATAGTTAAATACAAGT  1998

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 1999  TGCATCCAGGGGCCATTTAGCATCCGGTGTTTTGGATATAGTTAATAAAAAGGTATAAGGAACAATACCAGCCT  2072

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 2073  TGGCACTATAAAAAGCAATCAAACTGTTTAGATATTTAAATAAAAGTTTTTTTTTCATTTTGTAGAAATGCTAT  2146

Query 1048  -----------------------------------------  1047
                                                     
Sbjct 2147  TTGAATGTACAAATGGAATTAATAAAACATGATTTTGGAAA  2187

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.