Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10171
Subject:
XR_002956446.1
Aligned Length:
4170
Identities:
266
Gaps:
3895

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGAAGGGAGGTGGTCGCCCTCCGTCGTGGTCTGGCGTGTATTCCGAGCCTTGGTGTCTGGCGGTTTCCGAGCGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGGTGTCTGGCGGTTTCCGAGCGTTGGTGTCTTGGCGGTTTCCGACCGTTGGTGTCTGGCGGTTTCCGACCGTT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGTGTCTGGCACGCGCCACCCTCTCTTGCTTTGGTTGCGCCATGCCGATGTACCAGACAAGAAGACAAGAAAAT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GATTTGAGGACAGCTTCAATCGCGGTGTGAAGAAGAAAGCAGCAAAACGACCACTGAAAACAACGCCGGTGGCA  296

Query    1  -------------------------------------------------------------------ATGATCT  7
                                                                               |||||||
Sbjct  297  AAATATCCAAAGAAAGGGTCCCAAGCGGTACATCGTCATAGCCGGAAACAGTCAGAGCCACCAGCCAATGATCT  370

Query    8  TTTCAATGCTGCGAAAGCTGCCAAAAGTGACATGCAGGGATGTCCTTCCTGAGATCCGTGCTATCTGCATTGAG  81
            |||||||||||||||||||||||||||||||||||                                       
Sbjct  371  TTTCAATGCTGCGAAAGCTGCCAAAAGTGACATGC---------------------------------------  405

Query   82  GAAATTGGGTGTTGGATGCAAAGCTACAGCACGTCTTTCCTCACCGACAGCTATTTAAAATATATTGGTTGGAC  155
                                                                                      
Sbjct  406  --------------------------------------------------------------------------  405

Query  156  TCTGCATGATAAGCACCGAGAAGTCCGCGTGAAGTGCGTGAAGGCTCTGAAAGGGCTGTACGGTAACCGGGACC  229
                       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  406  -----------AGCACCGAGAAGTCCGCGTGAAGTGCGTGAAGGCTCTGAAAGGGCTGTACGGTAACCGGGACC  468

Query  230  TGACCGCACGCCTGGAGCTCTTCACTGGCCGCTTCAAGGACTGGATGGTTTCCATGATCATGGACAGAGAGTAC  303
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  469  TGACCGCACGCCTGGAGCTCTTCACTGGCCGCTTCAAGGACTGGATGGTTTCCATGATCATGGACAGAGAGTAC  542

Query  304  AGTGTGGCAGTGGAGGCCGTCAGATTACTGATACTTATCCT--------------------------TAAGAAC  351
            |||||||||||||||||||||||||||||||||||||||||                          |||||||
Sbjct  543  AGTGTGGCAGTGGAGGCCGTCAGATTACTGATACTTATCCTTAAACTTTTCTACCCTGAGTGCGAGATAAGAAC  616

Query  352  -----ATGGAAG------------------GGGTG--CTGATGGAC-------------GTGGACTGT------  381
                 .||||||                  .||||  |.|| ||||             .||  ||||      
Sbjct  617  GATGGGTGGAAGAGAGCAACGCCAGAGCCCAGGTGCCCAGA-GGACTTTCTTCCAGCTTCTG--CTGTCCTTCT  687

Query  382  -----GAGAGC------------GTCTACCCCATTGTG------------------------------------  402
                 ||||||            ||||.|.|||...||                                    
Sbjct  688  TTGTGGAGAGCAAGCAAATCGCAGTCTTCTCCAGGCTGACAAGGCGAAGGGCATGGCTTCGAAGTGCAAAAGAG  761

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct  762  TCATCATGAAACATCATGAATCATGAATCATTAGGCGTCTTCCCTTCGCTCCCCACTTTTTTTTTTTTTTTTTT  835

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct  836  GAGACTGAGTCTCGCTCTGTTGCCCAGGCTGGAGTACAGTGGTGCGATCTTGGCTCACTGCAACCTCTGCCTCC  909

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct  910  TGGGTTCAAGCGATTCTCCTGCCGTAGCCTCCTGAGTAGCTGGGATTACAGGTCCCCGCCACCACACCTGGCTA  983

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct  984  ATTTTCTTATTTATTTATTTATTTTTAGTAGAGATGGGGTTTTGCCATGTTGGCCAGGCTGGTCTCGAACTCCT  1057

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1058  GACCTCAAGTGATCCACCTGCTTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTAAGCCATTGCACCCAACTCA  1131

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1132  CTCCCCACCTTAAAACCAAAAGCGCTCTGGCTCTCAATGGAGACATCAAGCCCTCCCTGCCCCTTCTCCCTCCC  1205

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1206  CTTTCAGAGAATCTCCAGGAATTTCTGCCATTGTGCAGGGAGCAATTGAAAAATCAGTTAGTTCAGCTGGGTGC  1279

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1280  AGTGGCTCATGTCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCACCTGAGGCCAGGAGTTGGAGA  1353

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1354  CCAGCCTGGCCAGCACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGATGGGCAC  1427

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1428  CTGTAATCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGTGGAGCTTGCAGTGAGCC  1501

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1502  GAGACTGCAGCATTGCACTCCAGCCTGCGCAACAAGAGTGAAACTGTCTCAAAAAACAAAACAAAACAAAACAC  1575

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1576  AAAAAGAAAGAAAAAAGGAAAAATCAGTTAGTTCGATTATTAGAAGACTAGATTATTGCTCAGCAGTAACCACT  1649

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1650  CCTTTCCCACAAACTCCCCTCTCTAGGAGGAATGTACCTCCCCACCCATTCCTGTTAGGCTTGGCCAGGTGAAT  1723

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1724  CGCTTTGGCCAATAGAATGTAACTGACAAGGTGAGCAGAGATTTGCAGTGGGCTTGTGCTTGGTGCTGGTCCTC  1797

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1798  CGGGGCTCCTGCCTTTAGCCAGGGGAAGCACACTCCCCAGCCCCTCCTTAGCCCTCTGGCCCTGGGGAGAATGA  1871

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1872  GAGGCATGTGGCACAGTCCTGGACCCAGCCGTGGCTGGGAGCAAGCCTGGAAGCTTGAGCGAGAGATAAATGCT  1945

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1946  TGGTCTTTTTGTTTGAGACTAAGTCTCGCTCTATCGCCCAGGCTGGAGTGCAGTGTGGCACAATCTCAGCTCAT  2019

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2020  TGCAACCTCCACCTCCCAGGTTCAAGCTATTCTCCTGCTTCAGCCTCCCAAGTAGCTGGGACTACAGCCAAATT  2093

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2094  GGAAGACCCACTTCTCTGGACTGGATGCTGCATTGAATTGAGCAAAGGAACTGAGTGCCCGGGGAGCTCAAAGG  2167

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2168  GAAGCAGCCCAGCCTTCCTTCCGGGGCAGAGCAGTGGTGGGGACCTGTTTCCAGCTGCTTGTGCCCCCCACTTC  2241

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2242  ATGGAGGAGGGACCAGGGATCCTCAGAGGAGAGGGTGATGTTTGACAGTGGCTGCCTGCCCTGAAAATCGCCCT  2315

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2316  TGTCTGTCCAGCCTGGCCTGAATTTCACCCACATCAACCCACATGGGATACTTTATTTATTTATTTATCTATTT  2389

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2390  ATTTATTTATTTATTTATTTTAGAGCCAGGGTCTCACCCTGTGGCCCAGGCTGGAGTGCCGTGGTGCTATCATA  2463

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2464  GCTCACTGCAGCCTCAAACTCCTGGGCTCAAGTGATCCTCCCGCCTCAGCCTCCAGAGTAGCTGGGACTACAGG  2537

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2538  AACACACCACTGTGCCTGGCTTATTTTTCTTTTTTTTTTTGGTAGAGATGGGGGTCTCTCTATGTTGCCCAGGC  2611

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2612  TGGTCTCAAACTCCTGGCCTCAAGTGATCCTCCTGCCTCGGCCTCCCAAAGTACTGGGATTACAGAATCGGCTC  2685

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2686  CCAGACACCTGCCACTCGTGAATGCATCTGATAAACTCACTCACACTGAGGCCTTGGGGACTGAGAGTGCGATG  2759

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2760  ACATGGATCCTGCGGACAAACCGCCCCAGGGCGTACCTAGCACCGAAGCATCAGGCGCCACTAGGTCTCCAGCT  2833

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2834  CCTTCTCGGATGACGTCCTTCAGCACGCCCCGGTCCCCCGAGATGTCCAGCATCCTCTGACTTAACCGCTCGTA  2907

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2908  CAGGGACTGATGGAGAATGAAAGCCAGGCCTCAGAGCCGCAGACCCACCCGGCCACCCCTCAGCGTCTACGCCC  2981

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2982  CCACGTCTGGGCCCTCACCTGGCCGGGGGCGTCGTCCCCTTCCAGGACTCCCTGGTTTAACGCGCTTCCCCCCA  3055

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3056  TGTCCTAGCTGCCCTCCCTGTGGCGTGAGCCTTCGGCCTGGTGCGCCCCGCTGCCCTTCCTGGCTGTGACTCTG  3129

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3130  GTGGGGTTCCGAAGGCCCCTTTATGCCCGGCAGACCCCTACCGACGGCGGCATTCCATTCTGGGGCCACGAGGA  3203

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3204  GGCACTCATCGTTTCGTTCCAACCGCCGCCAACGGCCCTGGCCCTCGCGAGCTCTGGAACTACAGAGGTCGCAC  3277

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3278  GAGGCTCGCTCTGAGCCCAGGCTGGAGTTCAGTGATGGATCTCAGCTCACTGCAGCCGCCACCTCCTGGGCTCA  3351

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3352  AGAGATCCTCCTGCCTCGGCCTCCCAAGTAGCTGGGATTACAGACGTGCACCACCAGGCCCAGCTAATTTATTT  3425

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3426  TTTAGTTTTTAATTTGCTGGTAAGATGGTTTGTAGCTTTGTTGCCTAGGCTGGTCTTGAACTCCTGGCTTCAAG  3499

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3500  CGATCCTCCAGTCTTGACCTCCCAAAGTGCTGGGATTATAGGCGTAGGCTACAGCCAACTTTCAATACTGCCCC  3573

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3574  ATTGGGGGTTACGTTTCCAACACATGAAATTAGGAGGATACATTCAAACCACAGCAGTATATTATGACCATAAT  3647

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3648  ATTCATTAACTGTGTAACAGGCTGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGACCAGAGTGG  3721

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3722  GTAGATCACTCGAGGTCAGGAGTTTGAGACCAGCCTGGCCCACATGATGAAACCGCCTCTCTACTAAAAATACA  3795

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3796  AAAAATTAGCCGGTGTGGTGGCAGGCGCCTGTAACCTCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGA  3869

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3870  ATCCGGGAGGTGGAGGTGGCAGTGAGCCTGATTGCACCACTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCT  3943

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3944  GTCTCAATAAACAAACAAACAAACAAAACCTGTATAACAGAGTGTCATTGAATTTCTAAACGTTGAAAGACTTC  4017

Query  403  --------------------------  402
                                      
Sbjct 4018  ACATTAAAAAAAAACTCACAATTTAA  4043

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