Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10171
Subject:
XR_002956447.1
Aligned Length:
4054
Identities:
265
Gaps:
3777

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CAGAAGGGAGGTGGTCGCCCTCCGTCGTGGTCTGGCGTGTATTCCGAGCCTTGGTGTCTGGCGGTTTCCGAGCG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TTGGTGTCTGGCGGTTTCCGAGCGTTGGTGTCTTGGCGGTTTCCGACCGTTGGTGTCTGGCGGTTTCCGACCGT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TGGTGTCTGGCACGCGCCACCCTCTCTTGCTTTGGTTGCGCCATGCCGATGTACCAGACAAGAAGACAAGAAAA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGATTTGAGGACAGCTTCAATCGCGGTGTGAAGAAGAAAGCAGCAAAACGACCACTGAAAACAACGCCGGTGGC  296

Query    1  --------------------------------------------------------------------ATGATC  6
                                                                                ||||||
Sbjct  297  AAAATATCCAAAGAAAGGGTCCCAAGCGGTACATCGTCATAGCCGGAAACAGTCAGAGCCACCAGCCAATGATC  370

Query    7  TTTTCAATGCTGCGAAAGCTGCCAAAAGTGACATGCAGGGATGTCCTTCCTGAGATCCGTGCTATCTGCATTGA  80
            ||||||||||||||||||||||||||||||||||||                                      
Sbjct  371  TTTTCAATGCTGCGAAAGCTGCCAAAAGTGACATGC--------------------------------------  406

Query   81  GGAAATTGGGTGTTGGATGCAAAGCTACAGCACGTCTTTCCTCACCGACAGCTATTTAAAATATATTGGTTGGA  154
                                                                                      
Sbjct  407  --------------------------------------------------------------------------  406

Query  155  CTCTGCATGATAAGCACCGAGAAGTCCGCGTGAAGTGCGTGAAGGCTCTGAAAGGGCTGTACGGTAACCGGGAC  228
                        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  407  ------------AGCACCGAGAAGTCCGCGTGAAGTGCGTGAAGGCTCTGAAAGGGCTGTACGGTAACCGGGAC  468

Query  229  CTGACCGCACGCCTGGAGCTCTTCACTGGCCGCTTCAAGGACTGGATGGTTTCCATGATCATGGACAGAGAGTA  302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  469  CTGACCGCACGCCTGGAGCTCTTCACTGGCCGCTTCAAGGACTGGATGGTTTCCATGATCATGGACAGAGAGTA  542

Query  303  CAGTGTGGCAGTGGAGGCCGTCAGATTACTGATACTTATCCTTAAGAA--------------CATG--------  354
            |||||||||||||||||||||||||||||||||||||||||||||.||              ||.|        
Sbjct  543  CAGTGTGGCAGTGGAGGCCGTCAGATTACTGATACTTATCCTTAACAAATCGCAGTCTTCTCCAGGCTGACAAG  616

Query  355  --GAAGGG------------GTGC----------TGATGGA-----------CGTGGACTGTGAGAGCGTCT--  391
              ||||||            ||||          |.|||.|           |.||.|...|.|| ||||||  
Sbjct  617  GCGAAGGGCATGGCTTCGAAGTGCAAAAGAGTCATCATGAAACATCATGAATCATGAATCATTAG-GCGTCTTC  689

Query  392  -------ACCCCA---------------TTGTG-----------------------------------------  402
                   .|||||               ||.||                                         
Sbjct  690  CCTTCGCTCCCCACTTTTTTTTTTTTTTTTTTGAGACTGAGTCTCGCTCTGTTGCCCAGGCTGGAGTACAGTGG  763

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct  764  TGCGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCGTAGCCTCCTGAGTAGCTG  837

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct  838  GGATTACAGGTCCCCGCCACCACACCTGGCTAATTTTCTTATTTATTTATTTATTTTTAGTAGAGATGGGGTTT  911

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct  912  TGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCACCTGCTTTGGCCTCCCAAAGTGCTGG  985

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct  986  GATTACAGGCGTAAGCCATTGCACCCAACTCACTCCCCACCTTAAAACCAAAAGCGCTCTGGCTCTCAATGGAG  1059

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1060  ACATCAAGCCCTCCCTGCCCCTTCTCCCTCCCCTTTCAGAGAATCTCCAGGAATTTCTGCCATTGTGCAGGGAG  1133

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1134  CAATTGAAAAATCAGTTAGTTCAGCTGGGTGCAGTGGCTCATGTCTGTAATCCCAGCACTTTGGGAGGCTGAGG  1207

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1208  CGGGCAGATCACCTGAGGCCAGGAGTTGGAGACCAGCCTGGCCAGCACAGTGAAACCCCGTCTCTACTAAAAAT  1281

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1282  ACAAAAAATTAGCCGGGCGTGGTGATGGGCACCTGTAATCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATGGC  1355

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1356  GTGAACCTGGGAGGTGGAGCTTGCAGTGAGCCGAGACTGCAGCATTGCACTCCAGCCTGCGCAACAAGAGTGAA  1429

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1430  ACTGTCTCAAAAAACAAAACAAAACAAAACACAAAAAGAAAGAAAAAAGGAAAAATCAGTTAGTTCGATTATTA  1503

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1504  GAAGACTAGATTATTGCTCAGCAGTAACCACTCCTTTCCCACAAACTCCCCTCTCTAGGAGGAATGTACCTCCC  1577

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1578  CACCCATTCCTGTTAGGCTTGGCCAGGTGAATCGCTTTGGCCAATAGAATGTAACTGACAAGGTGAGCAGAGAT  1651

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1652  TTGCAGTGGGCTTGTGCTTGGTGCTGGTCCTCCGGGGCTCCTGCCTTTAGCCAGGGGAAGCACACTCCCCAGCC  1725

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1726  CCTCCTTAGCCCTCTGGCCCTGGGGAGAATGAGAGGCATGTGGCACAGTCCTGGACCCAGCCGTGGCTGGGAGC  1799

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1800  AAGCCTGGAAGCTTGAGCGAGAGATAAATGCTTGGTCTTTTTGTTTGAGACTAAGTCTCGCTCTATCGCCCAGG  1873

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1874  CTGGAGTGCAGTGTGGCACAATCTCAGCTCATTGCAACCTCCACCTCCCAGGTTCAAGCTATTCTCCTGCTTCA  1947

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1948  GCCTCCCAAGTAGCTGGGACTACAGCCAAATTGGAAGACCCACTTCTCTGGACTGGATGCTGCATTGAATTGAG  2021

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2022  CAAAGGAACTGAGTGCCCGGGGAGCTCAAAGGGAAGCAGCCCAGCCTTCCTTCCGGGGCAGAGCAGTGGTGGGG  2095

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2096  ACCTGTTTCCAGCTGCTTGTGCCCCCCACTTCATGGAGGAGGGACCAGGGATCCTCAGAGGAGAGGGTGATGTT  2169

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2170  TGACAGTGGCTGCCTGCCCTGAAAATCGCCCTTGTCTGTCCAGCCTGGCCTGAATTTCACCCACATCAACCCAC  2243

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2244  ATGGGATACTTTATTTATTTATTTATCTATTTATTTATTTATTTATTTATTTTAGAGCCAGGGTCTCACCCTGT  2317

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2318  GGCCCAGGCTGGAGTGCCGTGGTGCTATCATAGCTCACTGCAGCCTCAAACTCCTGGGCTCAAGTGATCCTCCC  2391

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2392  GCCTCAGCCTCCAGAGTAGCTGGGACTACAGGAACACACCACTGTGCCTGGCTTATTTTTCTTTTTTTTTTTGG  2465

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2466  TAGAGATGGGGGTCTCTCTATGTTGCCCAGGCTGGTCTCAAACTCCTGGCCTCAAGTGATCCTCCTGCCTCGGC  2539

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2540  CTCCCAAAGTACTGGGATTACAGAATCGGCTCCCAGACACCTGCCACTCGTGAATGCATCTGATAAACTCACTC  2613

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2614  ACACTGAGGCCTTGGGGACTGAGAGTGCGATGACATGGATCCTGCGGACAAACCGCCCCAGGGCGTACCTAGCA  2687

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2688  CCGAAGCATCAGGCGCCACTAGGTCTCCAGCTCCTTCTCGGATGACGTCCTTCAGCACGCCCCGGTCCCCCGAG  2761

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2762  ATGTCCAGCATCCTCTGACTTAACCGCTCGTACAGGGACTGATGGAGAATGAAAGCCAGGCCTCAGAGCCGCAG  2835

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2836  ACCCACCCGGCCACCCCTCAGCGTCTACGCCCCCACGTCTGGGCCCTCACCTGGCCGGGGGCGTCGTCCCCTTC  2909

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2910  CAGGACTCCCTGGTTTAACGCGCTTCCCCCCATGTCCTAGCTGCCCTCCCTGTGGCGTGAGCCTTCGGCCTGGT  2983

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2984  GCGCCCCGCTGCCCTTCCTGGCTGTGACTCTGGTGGGGTTCCGAAGGCCCCTTTATGCCCGGCAGACCCCTACC  3057

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3058  GACGGCGGCATTCCATTCTGGGGCCACGAGGAGGCACTCATCGTTTCGTTCCAACCGCCGCCAACGGCCCTGGC  3131

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3132  CCTCGCGAGCTCTGGAACTACAGAGGTCGCACGAGGCTCGCTCTGAGCCCAGGCTGGAGTTCAGTGATGGATCT  3205

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3206  CAGCTCACTGCAGCCGCCACCTCCTGGGCTCAAGAGATCCTCCTGCCTCGGCCTCCCAAGTAGCTGGGATTACA  3279

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3280  GACGTGCACCACCAGGCCCAGCTAATTTATTTTTTAGTTTTTAATTTGCTGGTAAGATGGTTTGTAGCTTTGTT  3353

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3354  GCCTAGGCTGGTCTTGAACTCCTGGCTTCAAGCGATCCTCCAGTCTTGACCTCCCAAAGTGCTGGGATTATAGG  3427

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3428  CGTAGGCTACAGCCAACTTTCAATACTGCCCCATTGGGGGTTACGTTTCCAACACATGAAATTAGGAGGATACA  3501

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3502  TTCAAACCACAGCAGTATATTATGACCATAATATTCATTAACTGTGTAACAGGCTGGGCGCGGTGGCTCACACC  3575

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3576  TGTAATCCCAGCACTTTGGGAGACCAGAGTGGGTAGATCACTCGAGGTCAGGAGTTTGAGACCAGCCTGGCCCA  3649

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3650  CATGATGAAACCGCCTCTCTACTAAAAATACAAAAAATTAGCCGGTGTGGTGGCAGGCGCCTGTAACCTCAGCT  3723

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3724  ACTTGGGAGGCTGAGGCAGGAGAATCACTTGAATCCGGGAGGTGGAGGTGGCAGTGAGCCTGATTGCACCACTG  3797

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3798  CACTCCAGCCTGGGCAACAAGAGCAAAACTCTGTCTCAATAAACAAACAAACAAACAAAACCTGTATAACAGAG  3871

Query  403  ----------------------------------------------------------  402
                                                                      
Sbjct 3872  TGTCATTGAATTTCTAAACGTTGAAAGACTTCACATTAAAAAAAAACTCACAATTTAA  3929

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