Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10171
Subject:
XR_002956449.1
Aligned Length:
4093
Identities:
349
Gaps:
3714

Alignment

Query    1  ATGA-------TCTTTTCAATGCTGCGAAAGCTGCCAAAAGTGACATGCAGGGATGT-----CCTTCC------  56
              ||       |.|||||       ||||.||...||..||.|.|| |.|||||.||     ||.|||      
Sbjct    1  --GACTGCGTTTTTTTTC-------CGAACGCCCGCAGCAGGGTCA-GAAGGGAGGTGGTCGCCCTCCGTCGTG  64

Query   57  -------------TGAGATCCGTGCTATCT------------GCATT-----------------GAG-GAAATT  87
                         |..||.||.||.|.|||            ||.||                 ||| |   ||
Sbjct   65  GTCTGGCGTGTATTCCGAGCCTTGGTGTCTGGCGGTTTCCGAGCGTTGGTGTCTGGCGGTTTCCGAGCG---TT  135

Query   88  GG-GT-----------------GTTGGATG-----------CAAAGCTAC-----------AGCACG-------  114
            || ||                 ||||| ||           |    |.||           .|||||       
Sbjct  136  GGTGTCTTGGCGGTTTCCGACCGTTGG-TGTCTGGCGGTTTC----CGACCGTTGGTGTCTGGCACGCGCCACC  204

Query  115  ---TCTTTCCT---------CA--CCGA-----CAG-CTATTTAA------AATATATTGGTT---GGAC-TCT  158
               ||||.|.|         ||  ||||     ||| |     ||      ||.|.|.||.||   |||| .||
Sbjct  205  CTCTCTTGCTTTGGTTGCGCCATGCCGATGTACCAGAC-----AAGAAGACAAGAAAATGATTTGAGGACAGCT  273

Query  159  GCA------------------------------------TGATAA-------GCACCGAGAAGTCCGCGTGAAG  189
            .||                                    |||.||       ||||||||||||||||||||||
Sbjct  274  TCAATCGCGGTGTGAAGAAGAAAGCAGCAAAACGACCACTGAAAACAACGCCGCACCGAGAAGTCCGCGTGAAG  347

Query  190  TGCGTGAAGGCTCTGAAAGGGCTGTACGGTAACCGGGACCTGACCGCACGCCTGGAGCTCTTCACTGGCCGCTT  263
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  348  TGCGTGAAGGCTCTGAAAGGGCTGTACGGTAACCGGGACCTGACCGCACGCCTGGAGCTCTTCACTGGCCGCTT  421

Query  264  CAAGGACTGGATGGTTTCCATGATCATGGACAGAGAGTACAGTGTGGCAGTGGAGGCCGTCAGATTACTGATAC  337
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  422  CAAGGACTGGATGGTTTCCATGATCATGGACAGAGAGTACAGTGTGGCAGTGGAGGCCGTCAGATTACTGATAC  495

Query  338  TTATCCTTAAGAACATGGAAGGGGTGCTGATGGACGTGGACTGTGAGAGCGTCTACCCCATTGTG---------  402
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
Sbjct  496  TTATCCTTAAGAACATGGAAGGGGTGCTGATGGACGTGGACTGTGAGAGCGTCTACCCCATTGTGTAGGCCTCT  569

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct  570  AATTGAGGCCTGGCCTCTGCTGTGGGTGAATTTCTGTACTGGAAACTTTTCTACCCTGAGTGCGAGATAAGAAC  643

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct  644  GATGGGTGGAAGAGAGCAACGCCAGAGCCCAGGTGCCCAGAGGACTTTCTTCCAGCTTCTGCTGTCCTTCTTTG  717

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct  718  TGGAGAGCAAGCAAATCGCAGTCTTCTCCAGGCTGACAAGGCGAAGGGCATGGCTTCGAAGTGCAAAAGAGTCA  791

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct  792  TCATGAAACATCATGAATCATGAATCATTAGGCGTCTTCCCTTCGCTCCCCACTTTTTTTTTTTTTTTTTTGAG  865

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct  866  ACTGAGTCTCGCTCTGTTGCCCAGGCTGGAGTACAGTGGTGCGATCTTGGCTCACTGCAACCTCTGCCTCCTGG  939

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct  940  GTTCAAGCGATTCTCCTGCCGTAGCCTCCTGAGTAGCTGGGATTACAGGTCCCCGCCACCACACCTGGCTAATT  1013

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1014  TTCTTATTTATTTATTTATTTTTAGTAGAGATGGGGTTTTGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGAC  1087

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1088  CTCAAGTGATCCACCTGCTTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTAAGCCATTGCACCCAACTCACTC  1161

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1162  CCCACCTTAAAACCAAAAGCGCTCTGGCTCTCAATGGAGACATCAAGCCCTCCCTGCCCCTTCTCCCTCCCCTT  1235

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1236  TCAGAGAATCTCCAGGAATTTCTGCCATTGTGCAGGGAGCAATTGAAAAATCAGTTAGTTCAGCTGGGTGCAGT  1309

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1310  GGCTCATGTCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCACCTGAGGCCAGGAGTTGGAGACCA  1383

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1384  GCCTGGCCAGCACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGATGGGCACCTG  1457

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1458  TAATCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGTGGAGCTTGCAGTGAGCCGAG  1531

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1532  ACTGCAGCATTGCACTCCAGCCTGCGCAACAAGAGTGAAACTGTCTCAAAAAACAAAACAAAACAAAACACAAA  1605

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1606  AAGAAAGAAAAAAGGAAAAATCAGTTAGTTCGATTATTAGAAGACTAGATTATTGCTCAGCAGTAACCACTCCT  1679

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1680  TTCCCACAAACTCCCCTCTCTAGGAGGAATGTACCTCCCCACCCATTCCTGTTAGGCTTGGCCAGGTGAATCGC  1753

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1754  TTTGGCCAATAGAATGTAACTGACAAGGTGAGCAGAGATTTGCAGTGGGCTTGTGCTTGGTGCTGGTCCTCCGG  1827

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1828  GGCTCCTGCCTTTAGCCAGGGGAAGCACACTCCCCAGCCCCTCCTTAGCCCTCTGGCCCTGGGGAGAATGAGAG  1901

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1902  GCATGTGGCACAGTCCTGGACCCAGCCGTGGCTGGGAGCAAGCCTGGAAGCTTGAGCGAGAGATAAATGCTTGG  1975

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1976  TCTTTTTGTTTGAGACTAAGTCTCGCTCTATCGCCCAGGCTGGAGTGCAGTGTGGCACAATCTCAGCTCATTGC  2049

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2050  AACCTCCACCTCCCAGGTTCAAGCTATTCTCCTGCTTCAGCCTCCCAAGTAGCTGGGACTACAGCCAAATTGGA  2123

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2124  AGACCCACTTCTCTGGACTGGATGCTGCATTGAATTGAGCAAAGGAACTGAGTGCCCGGGGAGCTCAAAGGGAA  2197

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2198  GCAGCCCAGCCTTCCTTCCGGGGCAGAGCAGTGGTGGGGACCTGTTTCCAGCTGCTTGTGCCCCCCACTTCATG  2271

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2272  GAGGAGGGACCAGGGATCCTCAGAGGAGAGGGTGATGTTTGACAGTGGCTGCCTGCCCTGAAAATCGCCCTTGT  2345

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2346  CTGTCCAGCCTGGCCTGAATTTCACCCACATCAACCCACATGGGATACTTTATTTATTTATTTATCTATTTATT  2419

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2420  TATTTATTTATTTATTTTAGAGCCAGGGTCTCACCCTGTGGCCCAGGCTGGAGTGCCGTGGTGCTATCATAGCT  2493

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2494  CACTGCAGCCTCAAACTCCTGGGCTCAAGTGATCCTCCCGCCTCAGCCTCCAGAGTAGCTGGGACTACAGGAAC  2567

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2568  ACACCACTGTGCCTGGCTTATTTTTCTTTTTTTTTTTGGTAGAGATGGGGGTCTCTCTATGTTGCCCAGGCTGG  2641

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2642  TCTCAAACTCCTGGCCTCAAGTGATCCTCCTGCCTCGGCCTCCCAAAGTACTGGGATTACAGAATCGGCTCCCA  2715

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2716  GACACCTGCCACTCGTGAATGCATCTGATAAACTCACTCACACTGAGGCCTTGGGGACTGAGAGTGCGATGACA  2789

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2790  TGGATCCTGCGGACAAACCGCCCCAGGGCGTACCTAGCACCGAAGCATCAGGCGCCACTAGGTCTCCAGCTCCT  2863

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2864  TCTCGGATGACGTCCTTCAGCACGCCCCGGTCCCCCGAGATGTCCAGCATCCTCTGACTTAACCGCTCGTACAG  2937

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2938  GGACTGATGGAGAATGAAAGCCAGGCCTCAGAGCCGCAGACCCACCCGGCCACCCCTCAGCGTCTACGCCCCCA  3011

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3012  CGTCTGGGCCCTCACCTGGCCGGGGGCGTCGTCCCCTTCCAGGACTCCCTGGTTTAACGCGCTTCCCCCCATGT  3085

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3086  CCTAGCTGCCCTCCCTGTGGCGTGAGCCTTCGGCCTGGTGCGCCCCGCTGCCCTTCCTGGCTGTGACTCTGGTG  3159

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3160  GGGTTCCGAAGGCCCCTTTATGCCCGGCAGACCCCTACCGACGGCGGCATTCCATTCTGGGGCCACGAGGAGGC  3233

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3234  ACTCATCGTTTCGTTCCAACCGCCGCCAACGGCCCTGGCCCTCGCGAGCTCTGGAACTACAGAGGTCGCACGAG  3307

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3308  GCTCGCTCTGAGCCCAGGCTGGAGTTCAGTGATGGATCTCAGCTCACTGCAGCCGCCACCTCCTGGGCTCAAGA  3381

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3382  GATCCTCCTGCCTCGGCCTCCCAAGTAGCTGGGATTACAGACGTGCACCACCAGGCCCAGCTAATTTATTTTTT  3455

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3456  AGTTTTTAATTTGCTGGTAAGATGGTTTGTAGCTTTGTTGCCTAGGCTGGTCTTGAACTCCTGGCTTCAAGCGA  3529

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3530  TCCTCCAGTCTTGACCTCCCAAAGTGCTGGGATTATAGGCGTAGGCTACAGCCAACTTTCAATACTGCCCCATT  3603

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3604  GGGGGTTACGTTTCCAACACATGAAATTAGGAGGATACATTCAAACCACAGCAGTATATTATGACCATAATATT  3677

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3678  CATTAACTGTGTAACAGGCTGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGACCAGAGTGGGTA  3751

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3752  GATCACTCGAGGTCAGGAGTTTGAGACCAGCCTGGCCCACATGATGAAACCGCCTCTCTACTAAAAATACAAAA  3825

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3826  AATTAGCCGGTGTGGTGGCAGGCGCCTGTAACCTCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAATC  3899

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3900  CGGGAGGTGGAGGTGGCAGTGAGCCTGATTGCACCACTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCTGTC  3973

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3974  TCAATAAACAAACAAACAAACAAAACCTGTATAACAGAGTGTCATTGAATTTCTAAACGTTGAAAGACTTCACA  4047

Query  403  -----------------------  402
                                   
Sbjct 4048  TTAAAAAAAAACTCACAATTTAA  4070

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.