Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10171
Subject:
XR_002956450.1
Aligned Length:
4088
Identities:
266
Gaps:
3813

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACCAGGTAAAGCCCTATCACCGGGTCTGCGCCCCTCTCCGTGTGGAGCCCACCTGCATGTACTGGCTCCCCAAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ATGCACGGCAGGAGCGGCGGCCCAGCACTTGGCACTGGCCACTTGCAGACAAGAAGACAAGAAAATGATTTGAG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GACAGCTTCAATCGCGGTGTGAAGAAGAAAGCAGCAAAACGACCACTGAAAACAACGCCGGTGGCAAAATATCC  222

Query    1  -----------------------------------------------------------ATGATCTTTTCAATG  15
                                                                       |||||||||||||||
Sbjct  223  AAAGAAAGGGTCCCAAGCGGTACATCGTCATAGCCGGAAACAGTCAGAGCCACCAGCCAATGATCTTTTCAATG  296

Query   16  CTGCGAAAGCTGCCAAAAGTGACATGCAGGGATGTCCTTCCTGAGATCCGTGCTATCTGCATTGAGGAAATTGG  89
            |||||||||||||||||||||||||||                                               
Sbjct  297  CTGCGAAAGCTGCCAAAAGTGACATGC-----------------------------------------------  323

Query   90  GTGTTGGATGCAAAGCTACAGCACGTCTTTCCTCACCGACAGCTATTTAAAATATATTGGTTGGACTCTGCATG  163
                                                                                      
Sbjct  324  --------------------------------------------------------------------------  323

Query  164  ATAAGCACCGAGAAGTCCGCGTGAAGTGCGTGAAGGCTCTGAAAGGGCTGTACGGTAACCGGGACCTGACCGCA  237
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  324  ---AGCACCGAGAAGTCCGCGTGAAGTGCGTGAAGGCTCTGAAAGGGCTGTACGGTAACCGGGACCTGACCGCA  394

Query  238  CGCCTGGAGCTCTTCACTGGCCGCTTCAAGGACTGGATGGTTTCCATGATCATGGACAGAGAGTACAGTGTGGC  311
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  395  CGCCTGGAGCTCTTCACTGGCCGCTTCAAGGACTGGATGGTTTCCATGATCATGGACAGAGAGTACAGTGTGGC  468

Query  312  AGTGGAGGCCGTCAGATTACTGATACTTATCCT--------------------------TAAGAAC-----ATG  354
            |||||||||||||||||||||||||||||||||                          |||||||     .||
Sbjct  469  AGTGGAGGCCGTCAGATTACTGATACTTATCCTTAAACTTTTCTACCCTGAGTGCGAGATAAGAACGATGGGTG  542

Query  355  GAAG------------------GGGTG--CTGATGGAC-------------GTGGACTGT-----------GAG  384
            ||||                  .||||  |.|| ||||             .||  ||||           |||
Sbjct  543  GAAGAGAGCAACGCCAGAGCCCAGGTGCCCAGA-GGACTTTCTTCCAGCTTCTG--CTGTCCTTCTTTGTGGAG  613

Query  385  AGC------------GTCTACCCCATTGTG--------------------------------------------  402
            |||            ||||.|.|||...||                                            
Sbjct  614  AGCAAGCAAATCGCAGTCTTCTCCAGGCTGACAAGGCGAAGGGCATGGCTTCGAAGTGCAAAAGAGTCATCATG  687

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct  688  AAACATCATGAATCATGAATCATTAGGCGTCTTCCCTTCGCTCCCCACTTTTTTTTTTTTTTTTTTGAGACTGA  761

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct  762  GTCTCGCTCTGTTGCCCAGGCTGGAGTACAGTGGTGCGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCA  835

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct  836  AGCGATTCTCCTGCCGTAGCCTCCTGAGTAGCTGGGATTACAGGTCCCCGCCACCACACCTGGCTAATTTTCTT  909

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct  910  ATTTATTTATTTATTTTTAGTAGAGATGGGGTTTTGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAA  983

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct  984  GTGATCCACCTGCTTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTAAGCCATTGCACCCAACTCACTCCCCAC  1057

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1058  CTTAAAACCAAAAGCGCTCTGGCTCTCAATGGAGACATCAAGCCCTCCCTGCCCCTTCTCCCTCCCCTTTCAGA  1131

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1132  GAATCTCCAGGAATTTCTGCCATTGTGCAGGGAGCAATTGAAAAATCAGTTAGTTCAGCTGGGTGCAGTGGCTC  1205

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1206  ATGTCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCACCTGAGGCCAGGAGTTGGAGACCAGCCTG  1279

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1280  GCCAGCACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGATGGGCACCTGTAATC  1353

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1354  CCAGCTACTCTGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGTGGAGCTTGCAGTGAGCCGAGACTGC  1427

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1428  AGCATTGCACTCCAGCCTGCGCAACAAGAGTGAAACTGTCTCAAAAAACAAAACAAAACAAAACACAAAAAGAA  1501

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1502  AGAAAAAAGGAAAAATCAGTTAGTTCGATTATTAGAAGACTAGATTATTGCTCAGCAGTAACCACTCCTTTCCC  1575

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1576  ACAAACTCCCCTCTCTAGGAGGAATGTACCTCCCCACCCATTCCTGTTAGGCTTGGCCAGGTGAATCGCTTTGG  1649

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1650  CCAATAGAATGTAACTGACAAGGTGAGCAGAGATTTGCAGTGGGCTTGTGCTTGGTGCTGGTCCTCCGGGGCTC  1723

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1724  CTGCCTTTAGCCAGGGGAAGCACACTCCCCAGCCCCTCCTTAGCCCTCTGGCCCTGGGGAGAATGAGAGGCATG  1797

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1798  TGGCACAGTCCTGGACCCAGCCGTGGCTGGGAGCAAGCCTGGAAGCTTGAGCGAGAGATAAATGCTTGGTCTTT  1871

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1872  TTGTTTGAGACTAAGTCTCGCTCTATCGCCCAGGCTGGAGTGCAGTGTGGCACAATCTCAGCTCATTGCAACCT  1945

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1946  CCACCTCCCAGGTTCAAGCTATTCTCCTGCTTCAGCCTCCCAAGTAGCTGGGACTACAGCCAAATTGGAAGACC  2019

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2020  CACTTCTCTGGACTGGATGCTGCATTGAATTGAGCAAAGGAACTGAGTGCCCGGGGAGCTCAAAGGGAAGCAGC  2093

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2094  CCAGCCTTCCTTCCGGGGCAGAGCAGTGGTGGGGACCTGTTTCCAGCTGCTTGTGCCCCCCACTTCATGGAGGA  2167

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2168  GGGACCAGGGATCCTCAGAGGAGAGGGTGATGTTTGACAGTGGCTGCCTGCCCTGAAAATCGCCCTTGTCTGTC  2241

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2242  CAGCCTGGCCTGAATTTCACCCACATCAACCCACATGGGATACTTTATTTATTTATTTATCTATTTATTTATTT  2315

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2316  ATTTATTTATTTTAGAGCCAGGGTCTCACCCTGTGGCCCAGGCTGGAGTGCCGTGGTGCTATCATAGCTCACTG  2389

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2390  CAGCCTCAAACTCCTGGGCTCAAGTGATCCTCCCGCCTCAGCCTCCAGAGTAGCTGGGACTACAGGAACACACC  2463

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2464  ACTGTGCCTGGCTTATTTTTCTTTTTTTTTTTGGTAGAGATGGGGGTCTCTCTATGTTGCCCAGGCTGGTCTCA  2537

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2538  AACTCCTGGCCTCAAGTGATCCTCCTGCCTCGGCCTCCCAAAGTACTGGGATTACAGAATCGGCTCCCAGACAC  2611

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2612  CTGCCACTCGTGAATGCATCTGATAAACTCACTCACACTGAGGCCTTGGGGACTGAGAGTGCGATGACATGGAT  2685

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2686  CCTGCGGACAAACCGCCCCAGGGCGTACCTAGCACCGAAGCATCAGGCGCCACTAGGTCTCCAGCTCCTTCTCG  2759

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2760  GATGACGTCCTTCAGCACGCCCCGGTCCCCCGAGATGTCCAGCATCCTCTGACTTAACCGCTCGTACAGGGACT  2833

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2834  GATGGAGAATGAAAGCCAGGCCTCAGAGCCGCAGACCCACCCGGCCACCCCTCAGCGTCTACGCCCCCACGTCT  2907

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2908  GGGCCCTCACCTGGCCGGGGGCGTCGTCCCCTTCCAGGACTCCCTGGTTTAACGCGCTTCCCCCCATGTCCTAG  2981

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2982  CTGCCCTCCCTGTGGCGTGAGCCTTCGGCCTGGTGCGCCCCGCTGCCCTTCCTGGCTGTGACTCTGGTGGGGTT  3055

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3056  CCGAAGGCCCCTTTATGCCCGGCAGACCCCTACCGACGGCGGCATTCCATTCTGGGGCCACGAGGAGGCACTCA  3129

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3130  TCGTTTCGTTCCAACCGCCGCCAACGGCCCTGGCCCTCGCGAGCTCTGGAACTACAGAGGTCGCACGAGGCTCG  3203

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3204  CTCTGAGCCCAGGCTGGAGTTCAGTGATGGATCTCAGCTCACTGCAGCCGCCACCTCCTGGGCTCAAGAGATCC  3277

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3278  TCCTGCCTCGGCCTCCCAAGTAGCTGGGATTACAGACGTGCACCACCAGGCCCAGCTAATTTATTTTTTAGTTT  3351

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3352  TTAATTTGCTGGTAAGATGGTTTGTAGCTTTGTTGCCTAGGCTGGTCTTGAACTCCTGGCTTCAAGCGATCCTC  3425

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3426  CAGTCTTGACCTCCCAAAGTGCTGGGATTATAGGCGTAGGCTACAGCCAACTTTCAATACTGCCCCATTGGGGG  3499

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3500  TTACGTTTCCAACACATGAAATTAGGAGGATACATTCAAACCACAGCAGTATATTATGACCATAATATTCATTA  3573

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3574  ACTGTGTAACAGGCTGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGACCAGAGTGGGTAGATCA  3647

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3648  CTCGAGGTCAGGAGTTTGAGACCAGCCTGGCCCACATGATGAAACCGCCTCTCTACTAAAAATACAAAAAATTA  3721

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3722  GCCGGTGTGGTGGCAGGCGCCTGTAACCTCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAATCCGGGA  3795

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3796  GGTGGAGGTGGCAGTGAGCCTGATTGCACCACTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCTGTCTCAAT  3869

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 3870  AAACAAACAAACAAACAAAACCTGTATAACAGAGTGTCATTGAATTTCTAAACGTTGAAAGACTTCACATTAAA  3943

Query  403  ------------------  402
                              
Sbjct 3944  AAAAAACTCACAATTTAA  3961

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.