Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10408
Subject:
NR_026904.1
Aligned Length:
3934
Identities:
807
Gaps:
3127

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CTTTCTCCCTGGCGGTTAGTGCTGAGGCTGAGGACAACATGCATTTACTAAAAATTCAAGAAAAGTCTAAAAAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ATCTTTTAAAAATATCCCCTCAAATCGGCATCTACTCCTCCAGAGAGTTACTATAATATTTTTTCTTCCCCTTT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TATTAAATAACCCTGTCAGCAGCCAAAACCGACCCCACCCGCGGCCCTGCAGCAGCCGTAAGGAGGAACCACGA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GACCCAGGCCTTCCCGCCGCCCGAACCGGACACCGGCAGCCAGCAGACAGCGGCGGACAAGCGACCTCGCTCTG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TGGCCAGTGAGTTGTTTCTGATTCGGATGATTTTTGTCCCTCGGCGCGTGCCCTTGCTCCCCGCCCCCGGCTGC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GAGACCCCCGGCCCGGCACTCGCTCTCCTCCTGTCACGAAAGGGTCGCGGCCTGTAGCCCTGTGGGCAGCCGTG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CCGCGATGAACCCCAGCGCCCCCAGCTACCACATGGCCTCGCTGTATGTGGGGGACCTGCACCCCGACGTGACT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GAATTGATGTTCCAAGAGAAGTTTAGCTCGACAGGTCCACCCTCACCATCCGGGTCTTTAGGGACTGGCTCACC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CACCTCTTCGTGGGCTACGTGTCCGTGAACTTCCTGCAGCCGGCAGACGCGGAGCGTGCTCTGGCCACCATGAA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CTTTGATGTTATAAAGGGCAAGCCAGTATAAGTCCTGTGGTCTCAGCGCGATCTATCGCTGCGCAAAAGTGGAG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TGGGCAACGTATTCGTTAAAAACCAGGACAAATCCGTTGAGAAAGCACTGTGTGATGCATTTTCTGCTTTTGGT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AACTTCCTTTCGTGTAAGGTAGTTTGTGATGAAAATGGTTCTAAGGGCTGTGGATCTGTACACTTTGAGACACA  888

Query    1  ----------------------------ATGGATGGGATGCTCCTGAATGGTCTCAATGTATTTGTTGGACGGT  46
                                        ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GGAAGCAGCTGAAGGAGCTATTGAAAAAATGGATGGGATGCTCCTGAATGGTCTCAATGTATTTGTTGGACGGT  962

Query   47  TTAGGTCTCCTAAAGAACAAGAAGCAGAACTTGGAGCTAGGGCAAAAGAGTCCAAAGTTGGACCTGCCTCAAGT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TTAGGTCTCCTAAAGAACAAGAAGCAGAACTTGGAGCTAGGGCAAAAGAGTCCAAAGTTGGACCTGCCTCAAGT  1036

Query  121  GTAAAAGTAATAACTGATGAAGGTGGAAAATCCAAAGGATTTGGATTTGTAAGCTTTGAAAGGCATGAAGATCC  194
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  GTAAAAGTAATAACTGATGAAGGTGGAAAATCCAAAGGATTTGGATTTGTAAGCTTTGAAAGGCATGAAGATCC  1110

Query  195  ACAGACAGCTATGGATGTGAATGGAAAGGAGTTCAGTGGAAATCAAACTTACATTTGTCTAGCTCCGAAAAAAG  268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  ACAGACAGCTATGGATGTGAATGGAAAGGAGTTCAGTGGAAATCAAACTTACATTTGTCTAGCTCCGAAAAAAG  1184

Query  269  TGGAAGAGCAGACAGAACTTAAGTGCAAATTTGAACAGATGAAGCAAGATAGAATCACCAGATACCAGGGTGCT  342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TGGAAGAGCAGACAGAACTTAAGTGCAAATTTGAACAGATGAAGCAAGATAGAATCACCAGATACCAGGGTGCT  1258

Query  343  AACGTTTGTGTGAAAAATCTTGATGAGAGTATTGATGATGAACGTCTCCAGAAAGAATTTTCTCCATTTGGTAT  416
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  AACGTTTGTGTGAAAAATCTTGATGAGAGTATTGATGATGAACGTCTCCAGAAAGAATTTTCTCCATTTGGTAT  1332

Query  417  AATCAATAGTGCAAATGTTATGATGGAGGGTGGTTGCAGCAAAAGGTTTGGCTTTGTATGTTTCTCCTCCCCAG  490
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  AATCAATAGTGCAAATGTTATGATGGAGGGTGGTTGCAGCAAAAGGTTTGGCTTTGTATGTTTCTCCTCCCCAG  1406

Query  491  AAGAAGTAGCTAAAGCAGTTACAGCAATGAACGGTAAAATTGTGGCCAGCAAGCCATTGCATGTAGCTTTAGCT  564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  AAGAAGTAGCTAAAGCAGTTACAGCAATGAACGGTAAAATTGTGGCCAGCAAGCCATTGCATGTAGCTTTAGCT  1480

Query  565  CAGTGCAAAGAACAGCGCCTGGCTCACTTCACTAACCAATACATGCAGAAGATGGCAAGTGTACGAGCTGTGCC  638
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  CAGTGCAAAGAACAGCGCCTGGCTCACTTCACTAACCAATACATGCAGAAGATGGCAAGTGTACGAGCTGTGCC  1554

Query  639  CCACCCTGTAATCAACCCCTACCAGCCAGCACCTTCTACATGTTACTTCGTAGCAGCTATCCCACAGACCCAGA  712
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  CCACCCTGTAATCAACCCCTACCAGCCAGCACCTTCTACATGTTACTTCGTAGCAGCTATCCCACAGACCCAGA  1628

Query  713  ACCGTGCTGCATACTATCCTCCTGGCCAAATTGCTCAACTAAGACCAAGTCCTCCCTGGGCTGTTCAGAGTGTC  786
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  ACCGTGCTGCATACTATCCTCCTGGCCAAATTGCTCAACTAAGACCAAGTCCTCCCTGGGCTGTTCAGAGTGTC  1702

Query  787  AGACCTTATCCATTCCAAATA-----------------------------------------------------  807
            |||||||||||||||||||||                                                     
Sbjct 1703  AGACCTTATCCATTCCAAATATGACCTGTGCTATCCGCTCAGCTGCTCGTAACCACCACTCTGAGACCAGCTTC  1776

Query  808  --------------------------------------------------------------------------  807
                                                                                      
Sbjct 1777  TTCACAGGTTCCACCAGTCATGTCCACACAGTATGTTGCTAACTCATCAATACAGACAATTAGTCCATGTCCTG  1850

Query  808  --------------------------------------------------------------------------  807
                                                                                      
Sbjct 1851  TAGCTGCTGCTGCTGGCTCCACTCCTGCGGTCTACATCATTCCACAGTACAAATATGCTTCAGGAATTCTCATT  1924

Query  808  --------------------------------------------------------------------------  807
                                                                                      
Sbjct 1925  CCTCAGCAGCATCTTAAAGCACATCCACAGGTTACCAGGAAGCAGCTTGCTGTTCATGTCCAAGGTCAAAAACT  1998

Query  808  --------------------------------------------------------------------------  807
                                                                                      
Sbjct 1999  TTTGACTGCTTCCATGTTAGCATCTGCCCCTCTTCAGCAGCAGAAGCAGATATTGGGTGAAAGACTCTTTCCTC  2072

Query  808  --------------------------------------------------------------------------  807
                                                                                      
Sbjct 2073  TTATTCAAGCCACGCACCCTACTCTTGCTGGTAAAATCACTGGCATGTTATTGGAGCTTGATAATTTAAAACTT  2146

Query  808  --------------------------------------------------------------------------  807
                                                                                      
Sbjct 2147  CTTCATATGCTTGTGTCTCCGGAGTCTCTGAAGCTGTAGTTGTACTACAAGCCTACCATGTGAAAGAGGCTCCA  2220

Query  808  --------------------------------------------------------------------------  807
                                                                                      
Sbjct 2221  GAAAGCAATTAACAGTGCTACTGTTGTACCAACTGCTTAAAATTGATCAGGGACCACCAAAAAACAAAAAAACA  2294

Query  808  --------------------------------------------------------------------------  807
                                                                                      
Sbjct 2295  ATAAAACAAAAAAAACTTGTGTTTCAACAAAGAAAAATATCTAAACATCAAAAAACTAAAATATTATGGAAAAA  2368

Query  808  --------------------------------------------------------------------------  807
                                                                                      
Sbjct 2369  AATTACAAAATATAAACAAAAAAGGAAAGCAAACTTTGAACCTTATGTACTGAGGAAATACCAAGTCTAGCAAA  2442

Query  808  --------------------------------------------------------------------------  807
                                                                                      
Sbjct 2443  CTTACTAGTCCTAGATTACTTATTGATTTGAAAATAACAGAAAAAAGAAAACAAAAAAATAGGAAAATTTAAAA  2516

Query  808  --------------------------------------------------------------------------  807
                                                                                      
Sbjct 2517  ACAAGCTGGGTGTGGTGGCTCACACATGTAATCCCAGCACTTTGGGAGGCTGGGGTGGATCGCCTGAGGTCAGG  2590

Query  808  --------------------------------------------------------------------------  807
                                                                                      
Sbjct 2591  AGTTCGAGACCAGCCTGGCCAACATAGTGAAACCTCATCTCTACTAAAAATGCAAAAAATTAGCTGGGCGTGGT  2664

Query  808  --------------------------------------------------------------------------  807
                                                                                      
Sbjct 2665  GGTGGGTACCTGTAATACCAGCTACTAGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGCAGAGGTTG  2738

Query  808  --------------------------------------------------------------------------  807
                                                                                      
Sbjct 2739  CAGTGAGCCAAGATCGCACCATTGCACTCCAGCCTGGGCAACAAGAGCAAAAAAACTCCATCTCAAAAAAAAAA  2812

Query  808  --------------------------------------------------------------------------  807
                                                                                      
Sbjct 2813  AAAATTAAAAACAAATTAATGTTTTATAGATCCTGGGAAAAATAATTTTCAGCAAAGTATGAAAATTTAAAGCA  2886

Query  808  --------------------------------------------------------------------------  807
                                                                                      
Sbjct 2887  TTCCTTTAATTTTTTAACTCTTAACTGTGGAAAAGCTCAGAATGTCAGTTATGTTTTAAATAACAGAATTGATA  2960

Query  808  --------------------------------------------------------------------------  807
                                                                                      
Sbjct 2961  ACTAAACAAGGAAATATAACTTGGATTATGAAATTCTTGGTTTAATAAAAATTCTTTAAATGGTTTAAAAAAAC  3034

Query  808  --------------------------------------------------------------------------  807
                                                                                      
Sbjct 3035  CTGAATAGGCTCAAAAACATAAGGTGATTATGCAGTGTATGTACACATCAAAGGAAGATGTGGCTGGGTGTGGT  3108

Query  808  --------------------------------------------------------------------------  807
                                                                                      
Sbjct 3109  GGCTCATGCCTGTCATCCCGTCACTTTGGGAGGCTGAGGTGGGAGGATCACGAGGTCAGGAGTTCAAGACCAGC  3182

Query  808  --------------------------------------------------------------------------  807
                                                                                      
Sbjct 3183  CTGGCCAACATAGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTGGCAGGTGCCTGTA  3256

Query  808  --------------------------------------------------------------------------  807
                                                                                      
Sbjct 3257  ATCCCAGCTATTCAGGAGGCTGAGCCAGCTGCCTGGGAGGCAGAGGTTGCAGTGAGCTGAGATCACGCCATTGC  3330

Query  808  --------------------------------------------------------------------------  807
                                                                                      
Sbjct 3331  ACTCCAACCTGGGCAACAGTGCGAGACTCTGTCTCAAAAACAAACAACAAAAAAAGAGAGATGTGTATGCATTA  3404

Query  808  --------------------------------------------------------------------------  807
                                                                                      
Sbjct 3405  ATACTAATATGTGAATCAAAGGATTACTCTAATTTTTTCCAAAGTAATTGCTTATTTAACCTATTCAACCATTT  3478

Query  808  --------------------------------------------------------------------------  807
                                                                                      
Sbjct 3479  TGTTTGTTTCAAACCTTAATAGGAATATAAACACAATCTAACTCTCAAACAGGTTAAATCTAAACTCTCTACAC  3552

Query  808  --------------------------------------------------------------------------  807
                                                                                      
Sbjct 3553  CTTTATCTAGCAAGTGCTATGTTGTATAGCTTTCTTCACTGTCACATCACAGCTATGATTTTGTAAAGCATTTA  3626

Query  808  --------------------------------------------------------------------------  807
                                                                                      
Sbjct 3627  TTTTTACCTCATTGGGATTTGTAGCTATTAGAATATCAAAGCTATAGGAATATTTCAAATATCCCAAATATAAA  3700

Query  808  --------------------------------------------------------------------------  807
                                                                                      
Sbjct 3701  AACGAATTTGATTTCAAAGGGAGGTTTTACACATTTAAATGCCTGAAAATAAGGGGTATAATAAAGAGCCTGGT  3774

Query  808  --------------------------------------------------------------------------  807
                                                                                      
Sbjct 3775  AGACTGTTTACTCTGACAATATCACTGAAAATGGCTATAAAATATGATGGAAACACTGAAAAATTACCTTTGAG  3848

Query  808  --------------------------------------------------------------------------  807
                                                                                      
Sbjct 3849  GAGGATGCAGAATCCGTTTTCTTTGTAAACTGACCCTGAAGATGTGTCAAAACATTTGTAATATCCACAATAAA  3922

Query  808  ------------  807
                        
Sbjct 3923  GAGTCAACGGCA  3934

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.