Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10461
Subject:
NM_018910.3
Aligned Length:
2943
Identities:
2346
Gaps:
225

Alignment

Query    1  ATGGTGTTTACCCCGGA-GGATA-----GATTGGGAAAGCAATGTCTGCTCCTCCCG----CTTCTGC------  58
            |||||||   .||||.| |||||     .|..|||                   |||    ||.||||      
Sbjct    1  ATGGTGT---GCCCGAATGGATACGACCCAGGGGG-------------------CCGACATCTACTGCTGTTTA  52

Query   59  ------TCCTCGCAGCCTGGAAGGTGGGGAGCGGCCAGCTCCACTACTCCGTACCCGAGGAGGCCAAACACGGC  126
                  |.||.|||||.|||.|||..|||||.|||||||||||||||||.||.|||||||||||.|||||.|||
Sbjct   53  TTATAATTCTAGCAGCTTGGGAGGCAGGGAGAGGCCAGCTCCACTACTCGGTCCCCGAGGAGGCTAAACATGGC  126

Query  127  ACCTTCGTGGGCCGGATCGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCAGGATGGC  200
            |.||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||.||..||.
Sbjct  127  AACTTCGTGGGCCGCATCGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCCGGGCGGT  200

Query  201  CTCCAAAGACCGCGAGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACC  274
            .|.||||..|||.|.|||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  201  GTGCAAATTCCGTGGGGATCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACC  274

Query  275  GCGAGGAGCTGTGCGGGCGGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTT  348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct  275  GCGAGGAGCTGTGCGGGCGGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGAAAGGCCGCTGCAGGTT  348

Query  349  TTCCATGTGGACGTGGAGGTGAGGGACATTAACGACAACCCGCCCTTGTTCCCGGTAGAGGAACAAA-GAGTGC  421
            ||||||||||||||||||||||.||||||||||||||||||.||..|||||||   ||.|..||||| ||.| |
Sbjct  349  TTCCATGTGGACGTGGAGGTGAAGGACATTAACGACAACCCTCCGGTGTTCCC---AGCGACACAAAGGAAT-C  418

Query  422  TGATTTA----CGAATCTAGGCTGCCAGATTCTGTGTTTCCACTGGAGGGCGCGTCCGATGCAGATGTTGGCTC  491
            || ||.|    .|||||.||||.||..||.|||..|||||||||.|||||||||||||||||||||.|.||...
Sbjct  419  TG-TTCATCGCGGAATCCAGGCCGCTTGACTCTCGGTTTCCACTAGAGGGCGCGTCCGATGCAGATATCGGGGA  491

Query  492  AAATTCCATCTTAACCTATAAACTCAGTTCTAGCGAATACTTCGGGCTAGATGTG--AA-----AATAAACAGT  558
            .||..||.|..|.||.||.|.|||.||..|.|..||.||.|||...||.||.|||  ||     ||..|.|||.
Sbjct  492  GAACGCCCTGCTCACTTACAGACTGAGCCCCAATGAGTATTTCTTCCTGGACGTGCCAACCAGCAACCAGCAGG  565

Query  559  GATGACAATAAACAAATTGGGCTCTTATTAAAGAAATCCTTGGACAGAGAGGAAGCTCCTGCACACAACTTATT  632
            .|       ||||...||||.||..|||||..||||...||.||||||||.|||.||||.|..|...|.|||||
Sbjct  566  TA-------AAACCTCTTGGACTTGTATTACGGAAACTTTTAGACAGAGAAGAAACTCCGGAGCTTCATTTATT  632

Query  633  CCTGACAGCCACAGATGGGGGCAAACCTGAGCTCACAGGCACTGTTCAGCTGCTGGTCACAGTGCTGGATGTGA  706
            .||.||.|||||.|||||.||||||||.|||||.||.|||||.|||||..|.||..||||.||.|||||....|
Sbjct  633  GCTCACGGCCACCGATGGAGGCAAACCCGAGCTGACTGGCACCGTTCAATTACTCATCACGGTACTGGACAACA  706

Query  707  ATGATAATGCTCCCACT-TTCGAACAG---TCTGAATACGAAGTAAGAATATTCGAAAAT-GCAGACAACGGAA  775
            ||||.||||| ||||.| |||| ||||   .|||.|||||  ||          ||||.| .||||.||||...
Sbjct  707  ATGACAATGC-CCCAGTGTTCG-ACAGAACCCTGTATACG--GT----------GAAATTACCAGAAAACGTTT  766

Query  776  CAACAGTTATCAGA---CTG------------AATGCTTCTGATCGGGATGAAGGAGCGAATGGGGCAATTTCA  834
            |      ||||.||   |||            |||||.||.|||...||.|||||...||||||||       |
Sbjct  767  C------TATCGGAACGCTGGTGATTCACCCCAATGCCTCAGATTTAGACGAAGGCTTGAATGGGG-------A  827

Query  835  TATTCTTT------------------------------TAATAGCCTTGTTGCAGCCATGGTTATTGACCACTT  878
            ||||.|||                              |||.|.||..|||.||  ||||      ||||.|||
Sbjct  828  TATTATTTACTCCTTCTCCAGTGATGTTTCTCCAGATATAAAATCCAAGTTCCA--CATG------GACCCCTT  893

Query  879  TAGCATAGATCGAAATACGGGAGAAAT---AGTGATTCGGGGTAATTTGGATTTTGAACA----AGAAAACTTA  945
            .||               .||.|.|||   ||||||   .||..||.|||||||||||.|    |||..||   
Sbjct  894  AAG---------------TGGGGCAATCACAGTGAT---AGGACATATGGATTTTGAAGAAAGTAGAGCAC---  946

Query  946  TACAAAATCCTCA-TTGACGCCACGGACAAAGGCCATCCTCCCATGGCGGGTCATTGCACCGTTTTAGTGAGAA  1018
             ||||.|||| || |.||.||....||.||||||...||.|||.||||.||||||||.||.|||.|.||| |||
Sbjct  947  -ACAAGATCC-CAGTCGAGGCTGTCGATAAAGGCTTCCCACCCCTGGCTGGTCATTGTACAGTTCTTGTG-GAA  1017

Query 1019  -TTTTGGATAAAAATGATAACGTCCCTGAGATAGCACTGACTTCCTTATCCTTGCCTGTACGTGAAGACGCTCA  1091
             ||.|||||..||||||.||.|..||..||.|..|.||.||||||.|.||..|.|||.|.|..||.|||||.||
Sbjct 1018  GTTGTGGATGTAAATGACAATGCTCCACAGTTGACTCTCACTTCCCTGTCTCTCCCTATTCCAGAGGACGCCCA  1091

Query 1092  ATTTGGTACTGTCATCGCCCTAATTAGCGTGAACGACCTCGATTCAGGTGCCAACGGGCAGGTGAACTGCTCGC  1165
            |...|||||.||||||.|..|.|||||||||...||||..||||..||.|.||||||.|||||.|.||||||.|
Sbjct 1092  ACCAGGTACCGTCATCACATTGATTAGCGTGTTTGACCGAGATTTTGGAGTCAACGGACAGGTTACCTGCTCCC  1165

Query 1166  TGACGCCTCACGTCCCTTTCAAGCTGGTGTCCACCTTCAAGAATTACTACTCGTTGGTGCTGGACAGTGCCCTG  1239
            |||||||.|.|||.||.||||||.|||||||||||||||||||||||||.||.||||||||||||||.||.|||
Sbjct 1166  TGACGCCCCGCGTTCCCTTCAAGTTGGTGTCCACCTTCAAGAATTACTATTCATTGGTGCTGGACAGCGCTCTG  1239

Query 1240  GACCGCGAGAGCGTGTCGGCCTATGAGTTGGTGGTGACCGCGCGGGACGGGGGCTCGCCTTCGCTGTGGGCCAC  1313
            |||||||||||.|||||.|||||||||.|||||||.||||||||||||||||||||||||||.|||||||||||
Sbjct 1240  GACCGCGAGAGTGTGTCCGCCTATGAGCTGGTGGTTACCGCGCGGGACGGGGGCTCGCCTTCTCTGTGGGCCAC  1313

Query 1314  AGCCAGCTTGTCTGTGGAGGTGGCCGACATGAATGACAATGCTCCGGCGTTCGCGCAGCCCGAGTACACAGTGT  1387
            .||.|||.||||.|||||||||||||||.||||.|||||.||.|||||||||||||||||||||||.||.||||
Sbjct 1314  TGCTAGCGTGTCCGTGGAGGTGGCCGACGTGAACGACAACGCCCCGGCGTTCGCGCAGCCCGAGTATACGGTGT  1387

Query 1388  TCGTGAAGGAGAACAACCCGCCGGGCTGCCACATCTTCACGGTGTCTGCGCGAGACGCGGACGCGCAGGAGAAC  1461
            ||||||||||||||||||||||||||||||||||||||||.|||||.|||.|.|||||||||||||||.|||||
Sbjct 1388  TCGTGAAGGAGAACAACCCGCCGGGCTGCCACATCTTCACTGTGTCGGCGGGGGACGCGGACGCGCAGAAGAAC  1461

Query 1462  GCGCTGGTGTCCTACTCGCTGGTGGAGCGGCGGGTGGGCGAGCGCGCGTTGTCGAGCTACATTTCGGTGCACGC  1535
            ||||||||||||||||||||||||||||.|||||||||||||||||||.|||||||||||.|.||.||||||||
Sbjct 1462  GCGCTGGTGTCCTACTCGCTGGTGGAGCTGCGGGTGGGCGAGCGCGCGCTGTCGAGCTACGTGTCAGTGCACGC  1535

Query 1536  GGAGAGCGGCAAGGTGTACGCGCTGCAGCCGCTGGACCACGAGGAGCTAGAGCTGCTGCAGTTTCAGGTGAGCG  1609
            |||||||||||||||||||||||||||||||.||||||||||||||||.||||||.|||||||.||||||||||
Sbjct 1536  GGAGAGCGGCAAGGTGTACGCGCTGCAGCCGTTGGACCACGAGGAGCTGGAGCTGTTGCAGTTCCAGGTGAGCG  1609

Query 1610  CGCGCGACGCGGGCGTGCCGCCTCTGGGCAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGACAAC  1683
            |||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610  CGCGCGATGCGGGCGTGCCGCCTCTGGGCAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGACAAC  1683

Query 1684  GCGCCGGCGCTGCTGGCGCCTCGGGTGGGTGGTACTGGTGGTGCAGTGAGCGAGCTGGTGCCGCGGTCACTGGG  1757
            ||||||||.|||||||||||||||||||||||.||||||||.||||||||.|||||.|||||||||||..||||
Sbjct 1684  GCGCCGGCACTGCTGGCGCCTCGGGTGGGTGGCACTGGTGGCGCAGTGAGAGAGCTTGTGCCGCGGTCTGTGGG  1757

Query 1758  TGCAGGCCAAGTGGTGGCGAAGGTGCGCGCAGTTGACGCCGACTCAGGCTACAACGCGTGGCTTTCGTATGAGC  1831
            .||.|||||.||||||||||||||.||.|||||||||||.|||||||||||||||||||||||||||||||||.
Sbjct 1758  CGCGGGCCATGTGGTGGCGAAGGTACGTGCAGTTGACGCTGACTCAGGCTACAACGCGTGGCTTTCGTATGAGT  1831

Query 1832  TGCAGCCCCCGGCAAGCAGCGCTCGCTTCCCGTTTCGCGTGGGGCTGTACACGGGCGAGATCAGCACCACTCGT  1905
            ||||.||...|||...|.|.||..||.|||||||.|||||||||||||||||.||.|||||||||||.||.||.
Sbjct 1832  TGCAACCGGTGGCGGCCGGTGCGAGCATCCCGTTCCGCGTGGGGCTGTACACTGGTGAGATCAGCACGACACGA  1905

Query 1906  GTCCTGGACGAAGCGGACTCTCCGCGCCACCGGCTGCTGGTGCTGGTGAAAGACCACGGTGAGCCGGCGCTGAC  1979
            |.|||.||.||..|||||.|.|||||||||||.||.||||||||.|||||.||||||||.|||||..|||||||
Sbjct 1906  GCCCTAGATGAGACGGACGCACCGCGCCACCGCCTTCTGGTGCTTGTGAAGGACCACGGGGAGCCCTCGCTGAC  1979

Query 1980  AGCGACGGCCACGGTTCTGGTGTCGCTGGTGGAGAGTGGCCAGGCTCCAAAGGCGTCATCACGGGCGTCGGTGG  2053
            |||.||.|||||.||.|||||||||||||||||.||.||||||||.|||||||||||.||.|||||.|||.|||
Sbjct 1980  AGCCACAGCCACCGTGCTGGTGTCGCTGGTGGAAAGCGGCCAGGCACCAAAGGCGTCGTCGCGGGCATCGTTGG  2053

Query 2054  GCGCCGCGGGCCCAGAGGCGGCGCTGGTGGATGTCAACGTGTACCTGATCATCGCCATCTGCGCGGTATCCAGC  2127
            ||...||.|||||||||.|.|.|||||||||||||||||||||||||||||||||||||||||||||.|||||.
Sbjct 2054  GCATTGCAGGCCCAGAGACCGAGCTGGTGGATGTCAACGTGTACCTGATCATCGCCATCTGCGCGGTGTCCAGT  2127

Query 2128  CTGCTGGTCCTCACGCTACTGCTGTACACAGCGCTGCGGTGCTCGGCGCCACCCACCGAGGGCGCGTGCACGGC  2201
            |||.||||.||.||.||.|||||||||||.|||.||||||||||.|||||..||.|.||||||||.||.|....
Sbjct 2128  CTGTTGGTGCTTACCCTGCTGCTGTACACGGCGTTGCGGTGCTCAGCGCCGTCCTCTGAGGGCGCATGTAGTTT  2201

Query 2202  GGACAAGCCCACGCTGGTGTGCTCCAGCGCAGTGGGGAGCTGGTCGTACTCGCAGCAGAGGCGGCAGAGGGTGT  2275
            ||..||||||||.|||||||||||||||||.||||||||||||||.|.|||.||||||||||||||||||||||
Sbjct 2202  GGTAAAGCCCACTCTGGTGTGCTCCAGCGCGGTGGGGAGCTGGTCATTCTCCCAGCAGAGGCGGCAGAGGGTGT  2275

Query 2276  GCTCCGGGGAGGGCCCACCCAAGATGGATCTCATGGCCTTTAGCCCCAGCCTTTCACCTTGTCCTATTATGATG  2349
            ||||.|||||||||||||||||||..||.|||||||||||.||.|||||||||.|.|...||||          
Sbjct 2276  GCTCTGGGGAGGGCCCACCCAAGACAGACCTCATGGCCTTCAGTCCCAGCCTTCCTCAGGGTCC----------  2339

Query 2350  GGTAAGGCGGAGAATCAGGATTTAAATGAAGATCATGATGCCAAACCACGACAGCCCAACCCTGACTGGCGTTA  2423
                         |||   .|.||.|             |.|||.|||||||||||||||||||||||||||||
Sbjct 2340  -------------ATC---CTCTACA-------------GACAATCCACGACAGCCCAACCCTGACTGGCGTTA  2384

Query 2424  CTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAG  2497
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2385  CTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAG  2458

Query 2498  GAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCA  2571
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2459  GAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCA  2532

Query 2572  GTCGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGG  2645
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2533  GTCGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGG  2606

Query 2646  TGAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCC  2719
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2607  TGAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCC  2680

Query 2720  AAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGT  2793
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2681  AAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGT  2754

Query 2794  AACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTGACAACAGTGACTAG  2850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 2755  AACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTGACAACAGTGACCAG  2811

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