Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10461
Subject:
NM_031857.1
Aligned Length:
2966
Identities:
2394
Gaps:
232

Alignment

Query    1  ATGGTGTT-TACCC----CGGAGGATAGAT----TGGGAAAGCAATGTCTGCTCCTCCCGCTTCTGCTCCTCGC  65
               .|||| |||.|    | ||||  ||||    .|||..|||   .|||.||.|||.||||||||.|||||||
Sbjct    1  ---ATGTTATACTCAAGTC-GAGG--AGATCCAGAGGGTCAGC---CTCTACTGCTCTCGCTTCTGATCCTCGC  65

Query   66  AGCCTGGAAGGTGGGGAGCGGCCAGCTCCACTACTCCGTACCCGAGGAGGCCAAACACGGCACCTTCGTGGGCC  139
            |...|||..||||||||||||||||||||||||||||||.||.|||||.|||.|||||||||||||||||||||
Sbjct   66  AATGTGGGTGGTGGGGAGCGGCCAGCTCCACTACTCCGTCCCGGAGGAAGCCGAACACGGCACCTTCGTGGGCC  139

Query  140  GGATCGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCAGGATGGCCTCCAAAGACCGC  213
            |.|||||||||||||||||||||||||||||||||||||||||||||||||||..|.|||..|||||||.||||
Sbjct  140  GCATCGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCCAGTTGGATTCCAAAGGCCGC  213

Query  214  GAGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGGAGCTGTG  287
            |.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  214  GGGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGGAGCTGTG  287

Query  288  CGGGCGGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGACG  361
            ||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||
Sbjct  288  CGGGCGGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTAGACAGGCCGCTGCAGGTTTTCCATGTGGACG  361

Query  362  TGGAGGTGAGGGACATTAACGACAACCCGCCCTTGTTCCCGGTAGAGGAAC-AAAGAGTGCTGATTTA----CG  430
            |||||||||.||||||||||||||||||.||..|||||||   ||.|..|| |||||.| ||| ||.|    .|
Sbjct  362  TGGAGGTGAAGGACATTAACGACAACCCTCCAGTGTTCCC---AGCGACACAAAAGAAT-CTG-TTCATCGCGG  430

Query  431  AATCTAGGCTGCCAGATTCTGTGTTTCCACTGGAGGGCGCGTCCGATGCAGATGTTGGCTCAAATTCCATCTTA  504
            ||||.||||.||..||.|||..|||||||||.|||||||||||||||||||||.|.||....||..||.|..|.
Sbjct  431  AATCCAGGCCGCTTGACTCTCGGTTTCCACTAGAGGGCGCGTCCGATGCAGATATCGGGGAGAACGCCCTGCTC  504

Query  505  ACCTATAAACTCAGTTCTAGCGAATACTTCGGGCTAGATGTG--AA-----AATAAACAGTGATGACAATAAAC  571
            ||.||.|.|||.||..|.|..||.||.|||...||.||.|||  ||     ||..|.|||..|       ||||
Sbjct  505  ACTTACAGACTGAGCCCCAATGAGTATTTCTTCCTGGACGTGCCAACCAGCAACCAGCAGGTA-------AAAC  571

Query  572  AAATTGGGCTCTTATTAAAGAAATCCTTGGACAGAGAGGAAGCTCCTGCACACAACTTATTCCTGACAGCCACA  645
            ...||||.||..|||||..||||...||.||||||||.|||.||||.|..|...|.|||||.||.||.|||||.
Sbjct  572  CTCTTGGACTTGTATTACGGAAACTTTTAGACAGAGAAGAAACTCCGGAGCTTCATTTATTGCTCACGGCCACC  645

Query  646  GATGGGGGCAAACCTGAGCTCACAGGCACTGTTCAGCTGCTGGTCACAGTGCTGGATGTGAATGATAATGCTCC  719
            |||||.||||||||.|||||.||.|||||.|||||..|.||..||||.||.|||||....|||||.||||| ||
Sbjct  646  GATGGAGGCAAACCCGAGCTGACTGGCACCGTTCAATTACTCATCACGGTACTGGACAACAATGACAATGC-CC  718

Query  720  CACT-TTCGAACAG---TCTGAATACGAAGTAAGAATATTCGAAAAT-GCAGACAACGGAACAACAGTTATCAG  788
            ||.| |||| ||||   .|||.|||||  ||          ||||.| .||||.||||...|      ||||.|
Sbjct  719  CAGTGTTCG-ACAGAACCCTGTATACG--GT----------GAAATTACCAGAAAACGTTTC------TATCGG  773

Query  789  A---CTG------------AATGCTTCTGATCGGGATGAAGGAGCGAATGGGGCAATTTCATATTCTTT-----  842
            |   |||            |||||.||.|||...||.|||||...||||||||       |||||.|||     
Sbjct  774  AACGCTGGTGATTCACCCCAATGCCTCAGATTTAGACGAAGGCTTGAATGGGG-------ATATTATTTACTCC  840

Query  843  -------------------------TAATAGCCTTGTTGCAGCCATGGTTATTGACCACTTTAGCATAGATCGA  891
                                     |||.|.||..|||.||  ||||      ||||.|||.||          
Sbjct  841  TTCTCCAGTGATGTTTCTCCAGATATAAAATCCAAGTTCCA--CATG------GACCCCTTAAG----------  896

Query  892  AATACGGGAGAAAT---AGTGATTCGGGGTAATTTGGATTTTGAACA----AGAAAACTTATACAAAATCCTCA  958
                 .||.|.|||   ||||||   .||..||.|||||||||||.|    |||..||    ||||.|||| ||
Sbjct  897  -----TGGGGCAATCACAGTGAT---AGGACATATGGATTTTGAAGAAAGTAGAGCAC----ACAAGATCC-CA  957

Query  959  -TTGACGCCACGGACAAAGGCCATCCTCCCATGGCGGGTCATTGCACCGTTTTAGTGAGAA-TTTTGGATAAAA  1030
             |.||.||....||.||||||...||.|||.||||.||||||||.||..||.|.||| ||| ||.|||||..||
Sbjct  958  GTCGAGGCTGTCGATAAAGGCTTCCCACCCCTGGCTGGTCATTGTACACTTCTTGTG-GAAGTTGTGGATGTAA  1030

Query 1031  ATGATAACG-TCCCTGAGATAGCACTGACTTCCTTATC------CT-----TGCCTGTACGTGAAGACGCTCAA  1092
            ||||.||.| |||     |.||  .||||     ||||      ||     |.||||||...||.|||||.|||
Sbjct 1031  ATGACAATGCTCC-----ACAG--TTGAC-----TATCAAAACGCTCTCGGTTCCTGTAAAAGAGGACGCACAA  1092

Query 1093  TTTGGTACTGTCATCGCCCTAATTAGCGTGAACGACCTCGATTCAGGTGCCAACGGGCAGGTGAACTGCTCGCT  1166
            .|.||.||.||.||.|||||.|||||.||||.||||||.||..|||.|||||||||||||||.|.||||||.||
Sbjct 1093  CTGGGGACAGTTATTGCCCTGATTAGTGTGATCGACCTAGACGCAGATGCCAACGGGCAGGTTACCTGCTCCCT  1166

Query 1167  GACGCCTCACGTCCCTTTCAAGCTGGTGTCCACCTTCAAGAATTACTACTCGTTGGTGCTGGACAGTGCCCTGG  1240
            ||||||.||||||||.|||||||||||||||||||.||||||||||||||||||||||||||||||.||.||||
Sbjct 1167  GACGCCCCACGTCCCCTTCAAGCTGGTGTCCACCTACAAGAATTACTACTCGTTGGTGCTGGACAGAGCTCTGG  1240

Query 1241  ACCGCGAGAGCGTGTCGGCCTATGAGTTGGTGGTGACCGCGCGGGACGGGGGCTCGCCTTCGCTGTGGGCCACA  1314
            ||||||||||.|||||.|||||.|||.|||||||.||||||||||||||||||||||||||.|||||||||||.
Sbjct 1241  ACCGCGAGAGTGTGTCCGCCTACGAGCTGGTGGTTACCGCGCGGGACGGGGGCTCGCCTTCACTGTGGGCCACG  1314

Query 1315  GCCAGCTTGTCTGTGGAGGTGGCCGACATGAATGACAATGCTCCGGCGTTCGCGCAGCCCGAGTACACAGTGTT  1388
            |||||..||||||||||||||||||||.||||.|||||.||.||.||||||||||||.||||||||||.|||||
Sbjct 1315  GCCAGGGTGTCTGTGGAGGTGGCCGACGTGAACGACAACGCACCAGCGTTCGCGCAGTCCGAGTACACGGTGTT  1388

Query 1389  CGTGAAGGAGAACAACCCGCCGGGCTGCCACATCTTCACGGTGTCTGCGCGAGACGCGGACGCGCAGGAGAACG  1462
            |||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.||||||||||||||||
Sbjct 1389  CGTGAAGGAGAACAACCCGCCGGGCTGCCACATCTTCACGGTGTCTGCGCGGGACGCTGACGCGCAGGAGAACG  1462

Query 1463  CGCTGGTGTCCTACTCGCTGGTGGAGCGGCGGGTGGGCGAGCGCGCGTTGTCGAGCTACATTTCGGTGCACGCG  1536
            |.||||||||||||||||||||||||||||||.|||||||||||.||.|||||||||||.|.||.|||||||||
Sbjct 1463  CCCTGGTGTCCTACTCGCTGGTGGAGCGGCGGTTGGGCGAGCGCTCGCTGTCGAGCTACGTGTCAGTGCACGCG  1536

Query 1537  GAGAGCGGCAAGGTGTACGCGCTGCAGCCGCTGGACCACGAGGAGCTAGAGCTGCTGCAGTTTCAGGTGAGCGC  1610
            ||||||||||||||||||||||||||||||.||||||||||||||||.||||||||.|||||.|||||||||||
Sbjct 1537  GAGAGCGGCAAGGTGTACGCGCTGCAGCCGTTGGACCACGAGGAGCTGGAGCTGCTACAGTTCCAGGTGAGCGC  1610

Query 1611  GCGCGACGCGGGCGTGCCGCCTCTGGGCAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGACAACG  1684
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct 1611  GCGCGACGCGGGCGTGCCGCCTCTGGGCAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGACAATG  1684

Query 1685  CGCCGGCGCTGCTGGCGCCTCGGGTGGGTGGTACTGGTGGTGCAGTGAGCGAGCTGGTGCCGCGGTCACTGGGT  1758
            ||||||||||||||.|.||||||.||.|.||.||||..||.||||||||||||.||||||.||||||..||||.
Sbjct 1685  CGCCGGCGCTGCTGACACCTCGGATGAGGGGCACTGACGGCGCAGTGAGCGAGATGGTGCTGCGGTCGGTGGGC  1758

Query 1759  GCAGGCCAAGTGGTGGCGAAGGTGCGCGCAGTTGACGCCGACTCAGGCTACAACGCGTGGCTTTCGTATGAGCT  1832
            ||.|||..||||||||.|||||||||||||||.|||||||||||.||||||||||||||||||||.||.|||||
Sbjct 1759  GCCGGCGTAGTGGTGGGGAAGGTGCGCGCAGTGGACGCCGACTCGGGCTACAACGCGTGGCTTTCATACGAGCT  1832

Query 1833  GCAGCC---CCCGGCAAGCAGCGCTCGCTTCCCGTTTCGCGTGGGGCTGTACACGGGCGAGATCAGCACCACTC  1903
            ||||||   ..||||   ||||||..||.|||||||.||||||||||||||||||||||||||||||||.||.|
Sbjct 1833  GCAGCCAGAAACGGC---CAGCGCGAGCATCCCGTTCCGCGTGGGGCTGTACACGGGCGAGATCAGCACAACGC  1903

Query 1904  GTGTCCTGGACGAAGCGGACTCTCCGCGCCACCGGCTGCTGGTGCTGGTGAAAGACCACGGTGAGCCGGCGCTG  1977
            |||.||||||||||.|||||.|.||||||||.||.||.|||||||||||||||||||||||.|||||.||||||
Sbjct 1904  GTGCCCTGGACGAAACGGACGCACCGCGCCAGCGCCTACTGGTGCTGGTGAAAGACCACGGGGAGCCAGCGCTG  1977

Query 1978  ACAGCGACGGCCACGGTTCTGGTGTCGCTGGTGGAGAGTGGCCAGGCTCCAAAGGCGTCATCACGGGCGTCGGT  2051
            ||.||.||||||||.||.||||||||||||||||||||.||||||||.||||||.|.||.||.||||||||.||
Sbjct 1978  ACGGCCACGGCCACTGTGCTGGTGTCGCTGGTGGAGAGCGGCCAGGCGCCAAAGTCATCGTCGCGGGCGTCAGT  2051

Query 2052  GGGCGCCGCGGGCCCAGAGGCGGCGCTGGTGGATGTCAACGTGTACCTGATCATCGCCATCTGCGCGGTATCCA  2125
            |||.|||.|||||||.||||.|.||||||||||||||||||||||||||||||||||||||||||||||.||.|
Sbjct 2052  GGGTGCCACGGGCCCCGAGGTGACGCTGGTGGATGTCAACGTGTACCTGATCATCGCCATCTGCGCGGTGTCTA  2125

Query 2126  GCCTGCTGGTCCTCACGCTACTGCTGTACACAGCGCTGCGGTGCTCGGCGCCACCCACCGAGGGCGCGTGCACG  2199
            |||||.||||.||||||||.|||||||||||.|.||||||||||||||||...|||||||||||||.||||.||
Sbjct 2126  GCCTGTTGGTTCTCACGCTGCTGCTGTACACTGTGCTGCGGTGCTCGGCGATGCCCACCGAGGGCGAGTGCGCG  2199

Query 2200  GCGGACAAGCCCACGCTGGTGTGCTCCAGCGCAGTGGGGAGCTGGTCGTACTCGCAGCAGAGGCGGCAGAGGGT  2273
            .|.|.||||||.|||||||||||.||.|||||.||||||||.|||||||||||||||||||||.||||||||||
Sbjct 2200  CCTGGCAAGCCGACGCTGGTGTGTTCTAGCGCGGTGGGGAGTTGGTCGTACTCGCAGCAGAGGAGGCAGAGGGT  2273

Query 2274  GTGCTCCGGGGAGGGCCCACCCAAGATGGATCTCATGGCCTTTAGCCCCAGCCTTTCACCTTGTCCTATTATGA  2347
            ||||||.||.|||||....|..||||..||.|||||||||||.|||||..|||||||.||||||.||    .||
Sbjct 2274  GTGCTCTGGCGAGGGTAAGCAGAAGACCGACCTCATGGCCTTCAGCCCGGGCCTTTCTCCTTGTGCT----GGA  2343

Query 2348  T-------GGGTAAGGCGGAGAA------------TCAGGATTTAAAT--GAAGATCATGATGCCAAACCACGA  2400
            |       |.|.|.|  ||||||            ||| ||||.||.|  ||||              ||||||
Sbjct 2344  TCTACAGAGCGAACG--GGAGAACCCTCTGCTTCCTCA-GATTCAACTGGGAAG--------------CCACGA  2400

Query 2401  CAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAGGC  2474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2401  CAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAGGC  2474

Query 2475  TGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCAG  2548
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2475  TGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCAG  2548

Query 2549  AGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGC  2622
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2549  AGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGC  2622

Query 2623  AACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCAT  2696
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2623  AACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCAT  2696

Query 2697  CCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGAGACCAAGA  2770
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2697  CCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGAGACCAAGA  2770

Query 2771  AAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTGACAACAGT  2844
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2771  AAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTGACAACAGT  2844

Query 2845  GACTAG  2850
            |||.||
Sbjct 2845  GACCAG  2850

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