Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10493
Subject:
NR_003578.1
Aligned Length:
3015
Identities:
544
Gaps:
2394

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGTTTAGCGTAAACCGGGAAGCGGATCGCGTGGAGTGAAAGTCACCGCAGCGGAGATGGACAAACCATGTGGGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCCCTCCAGGTGTGTGCGACCATGAAATGGGAGACTAGCAGGACCCACGTTGGCCAACCGTGGACCTGGTCCCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCAGTAGGAGTCGTGAGCCAGCTGAATTTGAATGCAAAGATGGAGCAAGGGCCGACTGGAGTCACACTGACATC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CACCCCCATAACATGGGGACAGATCAAGAAAACAAAGCAGGAAGCTGAGAAAATGCTGGAGCATCCATGTGCTT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGCCATGTTAGCAGTAGTGTCCTGTGAGGATTGATTTCCAAAAACTCCTGTTACATGAGGAAGACACCAAGAAG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AGCAAAGAAAAGGAGCCAGGGTGGCTCTTCCTCAGCTATCTCTTCCAAATGCATGACAAGGAAGTTCTCATCAA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GAAGGCAAGGCAATACAGAAGTGTTCCACACAGGGACATTGCAAAGACAAGCAAGTCATCACACTGGAGATTTT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TCCTTCCAGGAAATTGAGAAAGATTTTCAGGACTTTGAGTTTCAGTGGCAAGAAGATGAAAGAAATGGCCATGA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AGCACTCATGACAGAGATAAAAAAGTTGACAGGTAATACAGACTGATATGATCAAAGGCATGCTGGAAACAAAC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CTATTAAAGATCAGCTTGGATCAAGCTTTCATTCACATCTGCCTGAACTGCATATATTGCAGAGCAAAGGGAAA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  ATTGATAGTCAAGATGAGAAGTCTGTCAATGATGCTTCCTCAGTTTCAGCATCCCAAAGAATTTCTTGTATTCC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TAAAACCCATATTTCTAATAAGTATGGGAATAATTTCCTCCAGGAAGCACACATGAGAGAAAAATCTTTCCAAT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GTAATGAGAGTGGCAAAGCCTTTAATTGTAGCTCACTGTTAAAAAAATGTCAGATAATCCATTTAGGAGAGAAA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AAATATAAATGTGATATATGTGGCAAGGTCTTTAATCAGAAGCGATACCTTGCATACCATCATAGATGTCACAC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TGGTGAGAAACCTTACAAGTGTAATCAGTGTGGCAAGACCTTCAGTTACAAGTCATCCCTTGTAATTCACAAGG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CAATTCATACTGGAGAGAAACCTCACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAAAAAGCATATCTTGCA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AGTCATCATAGACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTTAGTCGCTAATC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  ACACCTTGAAAGACATAGGAGAATTCATACTGGAGAGAAACCGTACAAATGTAAGGTTTGTGACAAGGCTTTCA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GACGTGATTCACACCTGGCACAACATATTGTAATTCACACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGC  1406

Query    1  -------------------------------------------------------------------------A  1
                                                                                     |
Sbjct 1407  AAGACCTTTGTTCAAAATTCATCTCTTGTAATGCATAAGGTCATTCATACTGGAGAGAAATGTTACAAGTGTAA  1480

Query    2  TGAATGTGGCAAGGTTTTTAGTAGAAAAGCACACCTTGCATGTCATCATAGACTTCATACTG--------TCT-  66
            ||||||||||||||||||||.|...|||.||.||||||||||||||||||||||||||||||        .|| 
Sbjct 1481  TGAATGTGGCAAGGTTTTTAATCACAAATCAAACCTTGCATGTCATCATAGACTTCATACTGGAGAGAAACCTT  1554

Query   67  --------------------AAGGTTTCTAATCAACAATCAAACCTTGCACAACATCA----------------  104
                                |||||||.||||..|.||||||||||||.|||.|||||                
Sbjct 1555  ACAAGTGTAATGAATGTGGCAAGGTTTTTAATTGAAAATCAAACCTTGAACATCATCATAGAGTTCATATCGGA  1628

Query  105  --------------------------------------------------------------------GAGAGT  110
                                                                                ||||||
Sbjct 1629  GAAAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCAATTTCAATTCACGCCTTGAAATACATAGGAGAGT  1702

Query  111  TTATACTGGAGAGAAACCTTA-----------------------------------------------------  131
            |.||||||||||||||||.||                                                     
Sbjct 1703  TCATACTGGAGAGAAACCATAGAAATGTAAGGTTTGTGACAAGGCATTCGGGTGTGATTCACACCTGGCACAAC  1776

Query  132  -------------------------------CAAGTGTAATGAGTGGGGCAAAGCCTTAAGTGGGAAGTCGTCA  174
                                           |||||||.|||||||.|.||.||||||.|||||..||||..||
Sbjct 1777  ATACTAGAATTCACACTGGAGAGAAACCGTGCAAGTGTGATGAGTGTGACAGAGCCTTCAGTGGTCAGTCAACA  1850

Query  175  CTTTTTTATCATCAAGCAATCCATGGTGTAGGGAAACTTTGCAAATGTAATGATTGTCACAAAGTCTTCAGTAA  248
            |||.||.|.||||||||||||||||...||||||||||||.|.|||||||||||||||||||||||.|||||||
Sbjct 1851  CTTATTCACCATCAAGCAATCCATGTCATAGGGAAACTTTACTAATGTAATGATTGTCACAAAGTCCTCAGTAA  1924

Query  249  TGCTACAACCATTGCAAATCACTGGAGAATCCGTAATGAAGACAGATCTTACAAGTGTAATAAATGTGGTAAAA  322
            |||||||||||||||||||.|.||||||||.|.||||||||..|||.|||||||||||.||||||||||.|||.
Sbjct 1925  TGCTACAACCATTGCAAATTATTGGAGAATGCATAATGAAGTGAGAACTTACAAGTGTTATAAATGTGGCAAAT  1998

Query  323  TTTTCAGACATCAATCATATCTTGCAGTTTATCAGCGAACTCATACTGGAGAGAAACCTTACAAATATCATGAC  396
            |||||||||.||..|||||.||||||||||||||||||||||||||||||||||||||||||||||.|.||||.
Sbjct 1999  TTTTCAGACTTCGTTCATACCTTGCAGTTTATCAGCGAACTCATACTGGAGAGAAACCTTACAAATGTGATGAT  2072

Query  397  TGTGGCAAGGTCTTCAGTCAAGCTTCATCCTATGCAAAACATAGGAGAATTCATACAGGAGAGAAACCTCACAA  470
            |||||||||||||||||||||||||||||.|||||||||||.|||.|||||||||||.||.|||||||||||||
Sbjct 2073  TGTGGCAAGGTCTTCAGTCAAGCTTCATCTTATGCAAAACACAGGTGAATTCATACAAGAAAGAAACCTCACAA  2146

Query  471  GTGTGATGATTGTGGCAAAGTCTTGACTTCACGTTCACACCTCATTAGACATCAGAGAATCCATACTGGACATA  544
            |.||||||||||||.|||||.|||.|.||||.|||||..||||||||.|||||||||||||||||||.||||.|
Sbjct 2147  GGGTGATGATTGTGTCAAAGCCTTTATTTCAGGTTCATGCCTCATTACACATCAGAGAATCCATACTAGACAGA  2220

Query  545  AATCTTACAAATGTCTTAAGTGTGGCAAGGTCTTCAGTCTGTGGGCACTCCATGCAGAACATCAGAAAATTCAT  618
            .||||||||||.|||.||.||||||||||.||||.||||||.||.||||||.|||||.|||||||.||||||||
Sbjct 2221  GATCTTACAAAAGTCATATGTGTGGCAAGATCTTTAGTCTGAGGTCACTCCTTGCAGGACATCAGGAAATTCAT  2294

Query  619  TTT-----------------------------------------------------------------------  621
            |||                                                                       
Sbjct 2295  TTTTGAGGTAATAATTTCAAATGCAATGAGTATAGCAAACCATCAAGCACAATTGATGTTAGATTCAAATCAGC  2368

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 2369  ATTGAGTTCAGTTTGAGTTGACTTAACATTGAGTTCAAGTATTTGTTGAGATTAAAGTGTTTATGTTAAGAGGA  2442

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 2443  TTAGGCCAGGTGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGACAGGTAGATCACTTGAGAT  2516

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 2517  CAGGAGTTTGAGAGCAGCCTGGCCAACAGAGGTGAGCACCTTTCCCAGTCTGTTTTTTGTTTCTTCAACAAAAA  2590

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 2591  CTGATAGAGATTTTTATGGGTATTGTGTTGAATCAAAATCACATTGGGTTATGTAATCATTTAACAGTATTAAT  2664

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 2665  TTTTCCAAAACATCAATATGGGTTATATCTTTATATATGTTTTTAATCATTTTGATCAATGTTTGTAGATTTCA  2738

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 2739  ATGTATGAATTTCTCACTTCTTTCCATTTATTCCTATTTCTTACTTTAAGTTCTCTAGCAAATGGAAGTGTTTT  2812

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 2813  TAAATTTTCATTTAAAATTGTTTATTGTTAATGTATGAAAATTCAACGAATTTTTGGTGCTGATATTGTATTGT  2886

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 2887  GCAAATCTACTGATGTGTTTATTAGTCACAGTAGTATTTTGGTTGACTCTTTGTGATTTTCTACACAGAAGATC  2960

Query  622  -------------------------------------------------------  621
                                                                   
Sbjct 2961  ATGTCATCTACAAAAAATATAATTTTACTTTTTCTGAAAAAAAAAAAAAAAAAAA  3015

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