Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10493
Subject:
NR_102300.2
Aligned Length:
4762
Identities:
541
Gaps:
4144

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGACCAGGAAGTGGATCCCGTGGAATGACGGTCACGCCGCGGCGGGCGGATTGACTTCTAAAGACTGTTGGTAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTGAGAAAGAAACCCAGAAGAGGAAGAGGAAAGCAAAGGAGTCAGGGATGGCTCTTCCTCAGGTTCCGTCTCTC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GTGACCCAGTGTCATGAACTTGGGAAGAGGCTGCACTGGGCAGGTCCTGGGAAGGGCTCACACCCCGACATGGA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGGACACGGGGTGAGGGTCCTGTGGTGTCAGTGCTCTTGGGCAGCAGGGATTGTTCAGGGGCCACATCTGGATG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CACTGTCAGCTCACTGTGGACCAGGATTGGAGCAGCTGCCAATGGGAGTCACGTATTAATATGCACGAAGTACG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TGGGTCTATTGACATTCAGGGACGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AGGACTTTATACAGGGACGTGATGCTGGAGAATTATAGGAACCTCGTCTCCCTGGAGTTTTGGTCTGTCATCCC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GGCTAAAGTACAGTGGTGTCATCTCCGCTCACTGCAACCTCCACTTCCCAGGTTCAAGCAATTCTCCTGCCTCA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GCCTTCCAAGTACCTGGGACTACAGATATCTCTTCCAAATGCATGTTGAAGACGTTGTCGTCAACAGGGCAAGG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CAATACAGAAGTGATCCACACAGGGACATTGCACAGACAAGCAAGTCATCACATTGGAGAATTTTGTTTCCATG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AAATTGAGAAAGACATTCATGGCTTCGAGTTTCAGTGGAAAGAAGATGAAACAAATGGCCATGCAGCACCCATG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ACAGAAATCAAAGAGTTGGCTGGTAGTACAGGCCAACATGATCAAAGGCATGCTGGAAACAAGCGTATTAAAGA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TCAGCTTGGATCAAGCTTTCATTTGCATCTGCCTGAACCGCACATATTTCAGTCTGAAGGGAAAATTGGTAATC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AAGTTGAGAAGTCTATCAACAATGCTTCCTCAGTTTCAACATCCCAAAGAATTTGTTGTAGGCCCAAAACCCAT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  ATTTCTAATAAGTATGGAAATAATTCCCTCCATTCTTCATTACTCACACAAAAATGGGAAGTACACATGAGAGA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AAAATCTTTTGAATGTATACAGAGCTTCAAATCCTTTAATTGCAGCTCACTCTTAAAAAAACATCAGATAATTC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  ACTTAGAAGAGAAACAATGTAAATGTGATGTATGTGGCAAGGTCTTTAATCAGAAGCGATACCTTGCCTGCCAT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CGTAGATGTCACACTGGTGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTTGGTCATAATTCATCCCT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CTTCATTCACAAAGCGCTTCATACTGGAGAGAAACCTTATGAATGTGAAGAATGTGACAAAGTTTTCAGTCGCA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  AATCACACCTTGAAAGACATAAGAGGATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGATGAGGCT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TTCGCATATAATTCATATCTGGCAAAACATACTATACTTCACACTGGAGAGAAACCTTACACATGTAATGAATG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TGGCAAAGTTTTTAATCGACTATCAACCCTTGCACGCCATCATAGACTTCATACTGGAGAGAAACCTTACAAAT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GTGAAGAGTGTGACAAAGTTTTCAGTCGCAAATCACACCTTGAAAGACATAGGAGGATTCATAGTGGAGAGAAA  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CCTTACAAATGTGAAGAATGTTGCAAAGTTTTCAGTCGCAAATCAAACCTGGAAAGACACAGGAGGATTCATAC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCCAGAGGGATTCACACCTGGCACAACATCAGA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GAGTTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCGGTCAGACATCATCGCTTATA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  ATCCATCGTAGGCTTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCAGTCAGATGTC  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  ATCCCTTGTATACCATCATAGGCTTCATAGTGGAGAGAAGCCTTAATAGTGTAATGAGTGTGGCAAGACCTTCC  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  ATCACAATTCAACCCTGTAAGTCATAAGGCAATTCATACTGGAGAGAAACCTTACAAGCATAATGAATGTGGCA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  AGGTTTTTAATCAAAAAGCAACCTTTGCACATCACCATAGACTTCATACTGGAGAGAAACCTTACAAATGGGAG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  GAATGTGACAAAAGTTTTCAGTTGTAAATCAAACCTTAAAACACATAAGAAAATTCACATTGAAGAGAAACCAT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  ACAGAGGTAAGGTTTGTGACAAGGTTTTTGCATATAATGCATATCTGGCAAAACATACTAGAATTCACACTGGA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  GAGAAACTCATTATAAGTGTAATGAGTGTGGCAAGACCGTTGGTCAAAATTCACACCTTGTAATTAAAAGGTCA  2442

Query    1  -----------------------------------------------ATGAATGTGGCAAGGTTTTTAGTAGAA  27
                                                           |||||||||.||.||||||||.|..|.
Sbjct 2443  AAATTCACACCTTGTAATTCATAGTGGAGAGAAACCTTACAAGCACAATGAATGTGACATGGTTTTTAATCAAC  2516

Query   28  AAGCACACCTTGCATGTCATCATAGACTTCATACTG--------TCT----------------------AAGGT  71
            ||.|||||||||||.|||||||||||||||||||||        |||                      |||.|
Sbjct 2517  AATCACACCTTGCAAGTCATCATAGACTTCATACTGCATAGAAATCTTACAAACGTGAACAATGTGACAAAGTT  2590

Query   72  TTCTAATCA-----------------------------------------------------------------  80
            ||| |.|||                                                                 
Sbjct 2591  TTC-ATTCACAAATCCAGCTTCAAATACATAGGAGAATTCACACTGGAGAAAAGCCATAGAAATGTAAGGTTTG  2663

Query   81  --ACAA----------------TCAAACCTTGCACAACATCAGAGAGTTTATACTGGAGAGAAACCTTACAAGT  136
              ||||                |||.||.|.||||..|||...|||.||.|.||||||||||||||||||||||
Sbjct 2664  TGACAAGGCTTTCGGGAATGATTCACACGTGGCACCCCATACTAGAATTCACACTGGAGAGAAACCTTACAAGT  2737

Query  137  GTAATGAGTGGGGCAAAGCCTTAAGTGGGAAGTCGTCACTTTTTTATCATCAAGCAATCCATGGTGTAGGGAAA  210
            |.||||||||.||||||.||||.||||||.||||..|||||.||.|.||||||||||||||||||.||||||||
Sbjct 2738  GCAATGAGTGTGGCAAACCCTTTAGTGGGCAGTCACCACTTATTCACCATCAAGCAATCCATGGTATAGGGAAA  2811

Query  211  CTTTGCAAATGTAATGATTGTCACAAAGTCTTCAGTAATGCTACAACCATTGCAAATCACTGGAGAATCCGTAA  284
            |||..|.||||||||||||||||||||||.||||||||||||||||||||||||.||||.||||||||||..|.
Sbjct 2812  CTTGACTAATGTAATGATTGTCACAAAGTTTTCAGTAATGCTACAACCATTGCACATCATTGGAGAATCCACAG  2885

Query  285  TGAAGACAGATCTTACAAGTGTAATAAATGTGGTAAAATTTTCAGACATCAATCATATCTTGCAGTTTATCAGC  358
            |||||  ||||||||||||||||||||||||||.|||.||||||||||||..||||..||||||.||.|...|.
Sbjct 2886  TGAAG--AGATCTTACAAGTGTAATAAATGTGGCAAATTTTTCAGACATCGTTCATGCCTTGCATTTCACTGGT  2957

Query  359  GAACTCATACTGGAGAGAAACCTTACAAATATCATGACTGTGGCAAGGTCTTCAGTCAAGCTTCATCCTATGCA  432
            ||||||||.||||||||||||||||.||||.||||||.||.|||||||||||||||||||||||||||||||||
Sbjct 2958  GAACTCATGCTGGAGAGAAACCTTATAAATGTCATGATTGAGGCAAGGTCTTCAGTCAAGCTTCATCCTATGCA  3031

Query  433  AAACATAGGAGAATTCATACAGGAGAGAAACCTCACAAGTGTGATGATTGTGGCAAAGTCTTGACTTCACGTTC  506
            |||||||||||.||||||||||||||||||||||||||||||||||||||||||||||..||.|||||||.|||
Sbjct 3032  AAACATAGGAGGATTCATACAGGAGAGAAACCTCACAAGTGTGATGATTGTGGCAAAGCGTTTACTTCACATTC  3105

Query  507  ACACCTCATTAGACATCAGAGAATCCATACTGGACATAAATCTTACAAATGTCTTAAGTGTGGCAAGGTCTTCA  580
            ||||||||||||||||||||||||||||.|||||||.||||||||||||||||.|.|||||||.|.||||||||
Sbjct 3106  ACACCTCATTAGACATCAGAGAATCCATGCTGGACAGAAATCTTACAAATGTCATCAGTGTGGAAGGGTCTTCA  3179

Query  581  GTCTGTGGGCACTCCATGCAGAACATCAGAAAATTCATTTT---------------------------------  621
            |||...||.||||||.||||||.|||||||.|||||.||||                                 
Sbjct 3180  GTCCAAGGTCACTCCTTGCAGACCATCAGACAATTCCTTTTGGAGACAGTTGTTTCAAATGCAGTGAGTATAGC  3253

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3254  AAACCATCAAGCATTAATTGACATTAGAGTCAAATCAGCCTTGACCTGAGTTTGTTGATTTAACATTGATTTCA  3327

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3328  AGCATTAATTGCCATTAAACTGTTTATGTTAAGAGGATTGCACTGGGGGCCATGGCTCATGCCTGTAATTCCAG  3401

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3402  CACTTTGAGAGGCAAAGACAGGTAGGTCACTGGAGCTCACGAGTTTGAGAACAGCCTAGCCAACAGATGGGAGC  3475

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3476  TACTTTTCCCAGCCTTTATTTTCTTTTTCTTGTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCGCCCAGGTTGG  3549

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3550  AGTGCAGTGGCACGATCTCAGCTCACTGCAACCTCCTCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGTCTCC  3623

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3624  CAAGTAGCTGACACTACAGTTGTGTGCCACCACACCTGGGTAATTTTTTGTGTTTTTAGTAGAGACTGGGTTTC  3697

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3698  ACCGTGTTAGCCAGAATGGTCTCTATCTTCTGACTTTATGATCCACCCGACTCCACCTCCCAAAGTGCTGAGAT  3771

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3772  TACAGGAGTGAGCCACTGTGCCTGGCCTGTTTTTTGTTTCTTTAACAAAAAGTTATAGAGACTTCTATGAGTAT  3845

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3846  TGTACCGAATCTAAATCACAATTGAGTATATAATCATTGAGCGATATTCATTTTTCCAATCAGTATGGGATTTA  3919

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3920  TATCTATTTATACATGTTTTTAATCATTTTGATCAATGTTTATAGATTTCAAGGTACAAACCTCACTTTTTATG  3993

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3994  TTTATTCCTAAATATTTCTTACTTTAAGTTCTTTAGCAAATGGAATTGGTTTTTAATTTTCTTTTAAAATTATT  4067

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 4068  TATTGTTAATGTATGGAAATTCAACTAATTTTTGGTGCTGTTATTCTATTCTGCAAATAAACTGAATGTGTTTG  4141

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 4142  TTAGTTCCAGTTGCATTTTGGCTGACTCTTTGTGATTTTCTTTACAGAAGGTCATGTCATCTACAAACAAATAA  4215

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 4216  AATTTGACTTCTTTCTTTCTGATTTGGATGAGTTTGATTTCTTTTGCTATTTCATTGTTCTGGCTAGGACAGCC  4289

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 4290  AGTATTGATTGAATAGAAGGGGTGAGAGCATTCTTGCATCATGTGAGATCCTACAGGAAAAGCATTCCGTTTTC  4363

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 4364  CCTGATTGGTTATTTCTGCTGTGGTCATTTCATGGATGGTCTTTGTATTGCTGAGGTAAATTTTCTTCTGTATC  4437

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 4438  TATTTTGTGTGGGATTTCTATGATGACTTGATGTTGACTTTTGTGAAATGCTTTTTCTCCATGTATTGAGATGA  4511

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 4512  TGTGGTTTTCATCTTTCATTGTGTTCAAGTGGTATATCACATTGATTTGCTTGACTATGTTGAACCATCCTTGC  4585

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 4586  ATCCCAGAAATAAGTGGCACTTGCATATCTACAATCCTTTTAATATCCTCTTGAATACAGTTCGCTAGTACAAG  4659

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 4660  GGGTCTTCAAGAAGTTCATGAAAAAAATACATATTATGTGAAAATTGCACATGATGTCACATTTTCTGCACCAA  4733

Query  622  --------------------------  621
                                      
Sbjct 4734  AATAAACTGGCACAAATCTGTTATAA  4759

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