Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10493
Subject:
NR_163139.1
Aligned Length:
4929
Identities:
540
Gaps:
4314

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGACCAGGAAGCGGATCCCGTGGAATGACGGTGACGCCGCGGCGGGCGGATTGACTTCTAAAGAATCTTGGTAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTGAGGAAGAAACCCAGAAGAGGAAGAGGAAAGCAAAGGAGTCAGGGATGGCTCTTCCTCAGGGACTCATCCAA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGCCAAGGAAGTCCTCACTGACTCTTTGAGAACTCTATATATGCAAACCCTTTGGGATGGCCACTAAATTTGTC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ACAGAGTATGGTAACGTGGTTGACTGAACCACAGCCATGAAAGTGAGCTTCCAGCTCTTCTGCTGTTGCACCGC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AGTCCACATTGCCAGCATTGATGGAACGGGCATCAGCCTCCATCTTCTCCTCAATGGACGTGATCACTGGGCCA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GCATTGCCTGGAGGGTCTATTGACATTCAGGGACGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ACCCTGCTCAGAGGACTCTTTACAGGGATGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATTTTCGG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TCTGTCACCCAGGCTAAAGTGCAGTGGTGTCACCTCGGCTCACTGCAACCTCCACTTCCCAGGTTCAAGCAATT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CTCCTGCCTCAGCCTTCCAAGTAGCTGGGACTACAGATATCTCTTCCAAATGCATGATGAAGACATTCTTCTCA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  ACAGGGCAAGGCAATACAGAAGCGTTCCACACAGGGACATTGCAAAGACAAGCAAGTCATCACATTGGAGATTT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TTGCTTCCAGAAAATTGAGAAAGACATTCATGGCTTCCAGTTTCAGTGGAAAGAAGATGAAACAAATGACCATG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CAGCACCCATGACAGAAATCAAAGAGTTGACTGGTAGTACAGGCCAACATGATCAAAGGCATGCTGGAAACAAG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CATATTAAAGATCAGCTTGGATTAAGCTTTCATTCGCATCTGCCTGAACTGCACATATTTCAGCCTGAAGGGAA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AATTGGTAATCAAGTTGAGAAGTCTATCAACAATGCTTCCTCAGTTTCAACATCCCAAAGAATTTGTTGTAGGC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CCAAAACCCATATTTCTAATAAGTATGGAAATAATTCCCTCCATTCTTCATTACTCACACAAAAACGGAATGTA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CACATGAGAGAAAAATCTTTCCAATGTATTGAGAGTGGCAAATCCTTTAATTGTAGCTCACTTTTAAAAAAACA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TCAGATAACCCACTTAGAAGAGAAACAATGTAAATGTGATGTATATGGCAAGGTATTTAATCAGAAGCGATACC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TTGCATGCCATCGTAGATCTCACATTGATGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGATCTTTGGTCAC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AATACATCCCTCTTCCTTCACAAGGCGCTTCATACTGCAGACAAACCTTATGAATGTGAAGAATGTGACAAAGT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TTTCAGTCGCAAATCACACCTTGAAACACATAAGATAATTTATACTGGAGGGAAACCATACAAATGTAAGGTTT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GTGACAAAGCTTTCACATGTAATTCATACCTAGCAAAACATACTATAATTCACACTGGAGAGAAACCTTACAAG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TGTAATGAATGTGGCAAGGTTTTTAATCGACTGTCAACCCTTGCACGCCATCGTAGGCTTCATACTGGAGAGAA  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  ACCTTATGAATGTGAAGAATGTGAAAAAGTTTTCAGTCGCAAATCACATCTTGAAAGACATAAGAGGATTCATA  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTTGCATATAATTCATACCTGGCAAAACATAGT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  ATAATTCACACTGGAGAGAAGCCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAACAATCAACTCTTGC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  ACGCCATCATAGACTTCATACTGCAGAGAAACCATACAAATGTGAAGAATGTGACAAAGTTTTCAGGTGCAAAT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CACACCTTGAAAGACATAGGAGGATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTC  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  CGGAGTGATTCATGCCTTACAGAACATCAGAGAGTTCATACTGGAGAGAAACCATACATGTGTAATGAATGTGG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  CAAGGTTTTTAGTACAAAAGCAAACCTTGCATGTCATCATAAACTTCATACTGCAGAGAAACCGTACAAATGTG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  AAGAATGTGAGAAAGTTTTCAGTCGCAAATCACACATGGAAAGACATAGGAGGATTCATACTGGAGAGAAACCG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TACAAATGTAAGGTTTGTGACAAGGCTTTCCGGAGGGATTCACACCTGGCACAACATCAGAGAGTTCATACTGG  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  AGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCCGTCAGACATCATCGCTTATAATCCATCGTAGGC  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  TTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCAGTCAGATGTCATCCCTCGTATAC  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  CATCATAGGCTTCATAGTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAACAAGCACA  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  CCTTGCACAGCATCAGAGAGTTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCAGTC  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  AGATGTCAAACCTTGTATACCATCATAGACTTCATAGTGGAGAGAAACCTTGAAAGTGTAATGAGTGTGGCAAG  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  ACCTTCAGTCAGATGTCAAACCTTGTATACCATCATAGACTTCATAGTGGAGAGAAACCTTAAAAGTGTAATGA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  GTGTGGCAACACCTTCCATCACAATTCAACCCTTGTAAGTCACAAAGCCATTCATACTGGAGAGAAACTTTACA  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  AGTGTAATGAATGTGGCAAGGTTTTTAATCAAAAAACAACCCTTGCACGTCATCATAGAATTCATACTGCAGAG  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  AAACTTTACAAATAGGAAGAATGTGACAAAGTTTTCGGTTGCAAATCAAACCTTGAAACACATAAGAAAATGCA  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  TGCTGAAGAGAAACCACACAGATGTAAGGTTTATGACAAGATTTTTGAATATAATTCATACCTGGCAAAACATA  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  TTAGAATTCAAACTGGAGAGAAACCTTACAAATGTGATGAGTGTGGCAACACCTTTGGTCAAAATTCATACCTT  3108

Query    1  ----------------------------------------------ATGAATGTGGCAAGGTTTTTAGTAGAAA  28
                                                          ||||||||||||..|||||||.| .||.
Sbjct 3109  GTAATTCAAAAGGCAATTCGTATTGGAGAGAAACCCTACAAGTGTAATGAATGTGGCATAGTTTTTAAT-CAAC  3181

Query   29  AG-CACACCTTGCATGTCATCATAGACTTCATACTG--------------------------------------  63
            || |||||||||||.||||||||||.||||||||||                                      
Sbjct 3182  AGTCACACCTTGCAAGTCATCATAGTCTTCATACTGCAGAGAAATCTTACAAATGTGAAGACTGTGACAAAGTT  3255

Query   64  -------------------------------------------------------------TCTAAGGTTTCTA  76
                                                                         |.||||||||.||
Sbjct 3256  GTCAGTCACAAATCACAGCTTGAAAGACAGGAGAATTCATACTGGAGAAAAAACATACAAATGTAAGGTTTGTA  3329

Query   77  ATCAA-------------CAATCAAACCTTGCACAACATCAGAGAGTTTATACTGGAGAGAAACCTTACAAGTG  137
            | |||             .|.|||.||||.|||||.|||...|||.||.|.|||||||||||||||||||||||
Sbjct 3330  A-CAAGGCTTTTGGGAGTGATTCACACCTGGCACACCATACTAGAATTCACACTGGAGAGAAACCTTACAAGTG  3402

Query  138  TAATGAGTGGGGCAAAGCCTTAAGTGGGAAGTCGTCACTTTTTTATCATCAAGCAATCCATGGTGTAGGGAAAC  211
            .||||||||.|||||||||||.||||||.||||..|||||.||.|.|||||||||||||||.||.|||||||||
Sbjct 3403  CAATGAGTGTGGCAAAGCCTTTAGTGGGCAGTCACCACTTATTCACCATCAAGCAATCCATAGTATAGGGAAAC  3476

Query  212  TTTGCAAATGTAATGATTGTCACAAAGTCTTCAGTAATGCTACAACCATTGCAAATCACTGGAGAATCCGTAAT  285
            ||..|.|||.||||||||||||||||||.|||||||||||||||||||||||||||||.||||||||||.||||
Sbjct 3477  TTGACTAATATAATGATTGTCACAAAGTTTTCAGTAATGCTACAACCATTGCAAATCATTGGAGAATCCATAAT  3550

Query  286  GAAGACAGATCTTACAAGTGTAATAAATGTGGTAAAATTTTCAGACATCAATCATATCTTGCAGTTTATCAGCG  359
               ||.|||||||||||||||||||||||||..|.|.||||||||.|||..||||||.||||..||.||||.||
Sbjct 3551  ---GAGAGATCTTACAAGTGTAATAAATGTGACAGATTTTTCAGATATCGTTCATATATTGCTATTCATCATCG  3621

Query  360  AACTCATACTGGAGAGAAACCTTACAAATATCATGACTGTGGCAAGGTCTTCAGTCAAGCTTCATCCTATGCAA  433
            |||||||.||||||||||||||||.||||.||||||.||||||||||||||||||||||.||||||||||||||
Sbjct 3622  AACTCATGCTGGAGAGAAACCTTATAAATGTCATGATTGTGGCAAGGTCTTCAGTCAAGTTTCATCCTATGCAA  3695

Query  434  AACATAGGAGAATTCATACAGGAGAGAAACCTCACAAGTGTGATGATTGTGGCAAAGTCTTGACTTCACGTTCA  507
            ||||||||||.|||||||||||||||||| |||||||||||||||||||||||||||..||.|||||||.||||
Sbjct 3696  AACATAGGAGGATTCATACAGGAGAGAAA-CTCACAAGTGTGATGATTGTGGCAAAGCGTTTACTTCACATTCA  3768

Query  508  CACCTCATTAGACATCAGAGAATCCATACTGGACATAAATCTTACAAATGTCTTAAGTGTGGCAAGGTCTTCAG  581
            |||||||.|||||||||||||||||||.|||||||.||||||||||||||||.|.|||||||.|||||||||||
Sbjct 3769  CACCTCAATAGACATCAGAGAATCCATGCTGGACAGAAATCTTACAAATGTCATCAGTGTGGTAAGGTCTTCAG  3842

Query  582  TCTGTGGGCACTCCATGCAGAACATCAGAAAATTCATTTT----------------------------------  621
            ||.|.|..||||||.||||||.|||||||.|||||.||||                                  
Sbjct 3843  TCCGAGATCACTCCTTGCAGACCATCAGACAATTCCTTTTGGAGACAGTTGTTTCAAATGCCATTAGTATAGCA  3916

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3917  AGCCATCAAGCATTAATTGACATTACAGTTAAATGAGCACTGACCTGAGTTTGAGTTGACTTAACATTGAGTTT  3990

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 3991  AAGCATTAATTGACATTAAACTGTTTATGTTAAGAGGACTGGGCTGGGCACTGTGGCTCACGCCTGCAATGCCA  4064

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 4065  GCACTTTGAGAGGCCAAGACTGGTAGGTCACTGGAGGTTAAGAGTTTGAGAACAGCCTGGCCAACAGACGGGAG  4138

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 4139  CCACTTTTCCCAGCCTGTGTTTTCATTTCTATTCTTTCTTTCTTTTTTCTTTTTTTTGTTTTTGTTTTTGAGAT  4212

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 4213  GGAGTCTCTTGCTCTGTCATCCAGGTTGGAGTGCAGTGGCATGATCTTGACTCACTACAACCTCCGCCTCCCAG  4286

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 4287  GTTCAAGCGATCCTCCTGCCTCAGTCTCCTGACTAGCTGGGACTACAGGTGCATGCCACCACACCTGGATAATT  4360

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 4361  TTTTGTATTTTTAGTAGAGACTGGGTTTCGCTGTGTTAGCCTGGATGGTCTCGATTTTCTGATCTTATGATTCA  4434

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 4435  CCCACCTCTACCTCCCGAAGTGCTGAGATTATGGGCGTGAGCCACCGTGACTGGCCTGTTTTTTGTTTCTTTAA  4508

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 4509  CAAAAAGTTATGGGGATTTCTATGAGTATTGTGTTGAATCTAAATCACATTCGGTTATATAATCATTGAGCAAT  4582

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 4583  ACTAATTTTTCCAATCAGTATGGATTGTATGTGTATTTATATGTTTTTAATCATTTTGATCAATGTTTGTAGAT  4656

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 4657  TTCAAGGTACAAACTTCTCACCTTTATATGTTTATTCCTAAATATTTCTTACTTTAAGCTCTTTAGCAAATGGA  4730

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 4731  AGTGGTTTTTAATTTTATTTTAAAATTATTTAATGTTAATGTATGGAAATTCAACTAATTTTTGGTGCTATTAT  4804

Query  622  --------------------------------------------------------------------------  621
                                                                                      
Sbjct 4805  TCTATTCTGCAAATACACTGAATATGTTTATTAGTTCCAGTTGTATTTTGGTTGACTGTGATTTTCTTCACAGA  4878

Query  622  ---------------------------------------------  621
                                                         
Sbjct 4879  TCATGTCATCTACAAACAAATAAAATTTGACTTCTTTCTTTCTGA  4923

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